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Naslov:Virome analysis of irrigation water sources provides extensive insights into the diversity and distribution of plant viruses in agroecosystems
Avtorji:ID Maksimović, Olivera (Avtor)
ID Bačnik, Katarina (Avtor)
ID Rivarez, Mark Paul Selda (Avtor)
ID Vučurović, Ana (Avtor)
ID Mehle, Nataša (Avtor)
ID Ravnikar, Maja (Avtor)
ID Gutiérrez-Aguirre, Ion (Avtor)
ID Kutnjak, Denis (Avtor)
Datoteke:URL URL - Izvorni URL, za dostop obiščite https://doi.org/10.1016/j.watres.2023.120712
 
.pdf PDF - Izvorna datoteka, prenos (1,67 MB)
MD5: 7B6B06273D709F57587011AD02B19CB1
 
Jezik:Angleški jezik
Tipologija:1.01 - Izvirni znanstveni članek
Organizacija:Logo NIB - Nacionalni inštitut za biologijo
Povzetek:Plant viruses pose a significant threat to agriculture. Several are stable outside their hosts, can enter water bodies and remain infective for prolonged periods of time. Even though the quality of irrigation water is of increasing importance in the context of plant health, the presence of plant viruses in irrigation waters is understudied. In this study, we conducted a large-scale high-throughput sequencing (HTS)-based virome analysis of irrigation and surface water sources to obtain complete information about the abundance and diversity of plant viruses in such waters. We detected nucleic acids of plant viruses from 20 families, discovered several novel plant viruses from economically important taxa, like Tobamovirus and observed the influence of the water source on the present virome. By comparing viromes of water and surrounding plants, we observed presence of plant viruses in both compartments, especially in cases of large-scale outbreaks, such as that of tomato mosaic virus. Moreover, we demonstrated that water virome data can extensively inform us about the distribution and diversity of plant viruses for which only limited information is available from plants. Overall, the results of the study provided extensive insights into the virome of irrigation waters from the perspective of plant health. It also suggested that an HTS-based water virome surveillance system could be used to detect potential plant disease outbreaks and to survey the distribution and diversity of plant viruses in the ecosystem.
Ključne besede:plant viruses, environmental water testing, high-throughput sequencing, agroecosystems, irrigation water, virome
Status publikacije:Objavljeno
Verzija publikacije:Objavljena publikacija
Datum objave:09.10.2023
Leto izida:2024
Št. strani:str. [1]-15
Številčenje:Vol. 249, art. no. ǂ120712
PID:20.500.12556/DiRROS-18582 Novo okno
UDK:578
ISSN pri članku:0043-1354
DOI:10.1016/j.watres.2023.120712 Novo okno
COBISS.SI-ID:172665347 Novo okno
Opomba:Soavtorji: Katarina Bačnik, Mark Paul Selda Rivarez, Ana Vučurović, Nataša Mehle, Maja Ravnikar, Ion Gutierrez-Aguirre, Denis Kutnjak;
Datum objave v DiRROS:29.03.2024
Število ogledov:96
Število prenosov:42
Metapodatki:XML RDF-CHPDL DC-XML DC-RDF
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Gradivo je del revije

Naslov:Water research
Skrajšan naslov:Water res.
Založnik:Pergamon Press
ISSN:0043-1354
COBISS.SI-ID:26617344 Novo okno

Gradivo je financirano iz projekta

Financer:EC - European Commission
Program financ.:European Commission
Številka projekta:813542
Naslov:Innovative Network for Next Generation Training and Sequencing of Virome
Akronim:INEXTVIR

Financer:ARIS - Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije
Številka projekta:P4-0407-2019
Naslov:Okoljska in aplikativna virologija: virusi, prijatelji in sovražniki

Financer:ARIS - Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije
Številka projekta:P4-0165-2022
Naslov:Biotehnologija in sistemska biologija rastlin

Financer:ARIS - Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije
Številka projekta:L4-3179-2021
Naslov:Odkrivanje in z vodo povezana epidemiologija porajajočih se tobamovirusov, ki okužujejo kmetijske rastline

Licence

Licenca:CC BY-NC 4.0, Creative Commons Priznanje avtorstva-Nekomercialno 4.0 Mednarodna
Povezava:http://creativecommons.org/licenses/by-nc/4.0/deed.sl
Opis:Licenca Creative Commons, ki prepoveduje komercialno uporabo, vendar uporabniki ne rabijo upravljati materialnih avtorskih pravic na izpeljanih delih z enako licenco.

Sekundarni jezik

Jezik:Slovenski jezik
Ključne besede:rastlinski virusi, okoljsko testiranje vode, visoko zmogljivo sekvenciranje, agroekosistemi, viromi


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