1. Cadmium in potato crops : differences among varietiesEva Smolnikar, Peter Dolničar, Kristina Ugrinović, 2026, objavljeni znanstveni prispevek na konferenci Ključne besede: cadmium, potato, potato vaeieties, potato crops, cd intake, environmental conditions Objavljeno v DiRROS: 29.06.2026; Ogledov: 182; Prenosov: 76
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2. Optimised extraction and HPLC–DAD determination of steroidal glycoalkaloids in potato tubers : analytical validation and environmental sustainability evaluationHajer Ben Ammar, Peter Dolničar, Barbara Pipan, Lovro Sinkovič, 2026, izvirni znanstveni članek Povzetek: Steroidal glycoalkaloids ( α-solanine and α-chaconine) are major potato toxins whose accurate quantification is often challenged by matrix effects and chromatographic selectivity. This study reports the optimisation and validation of a robust reversed-phase HPLC-DAD method for the determination of glycoalkaloids in potato tissues, combined with a systematic assessment of the environmental sustainability of the analytical workflow. Extraction conditions were optimized by integrating systematic solvent screening with a factorial experimental design to evaluate the effect of key operational variables on glycoalkaloid recovery and refine extraction performance The resulting extraction medium improved extract cleanliness and chromatographic stability. A subsequent C18 solid-phase extraction SPE step further reduced matrix effect and enhanced analytical selectivity. Chromatographic separation was achieved on a conventional C18 column using an acetonitrile-water gradient, providing baseline resolution (Rs > 1.5) of α 2 -solanine and α-chaconine with stable diode-array detection (DAD) at 205 nm. The method was validated according to ICH Q2(R2) and AOAC guidelines, demonstrating excellent linearity (R > 0.995), low limits of detection (0.462–0.767 µg/mL) and quantification (1.540–2.558 µg/mL), high precision (≤ 5% RSD), and recoveries of 90–105%. Robustness testing confirmed minimal sensitivity to routine variations in chromatographic parameters. Application to potato breeding lines demonstrated reliable quantification and revealed genotype-dependent variation in glycoalkaloid content. The environmental assessment of the analytical procedure was evaluated using Analytical Eco-scale, GAPI and AGREE metrics, demonstrating reduced solvent consumption, avoidance of strongly acidic extraction conditions, and a simplified sample preparation workflow. The proposed HPLC-DAD workflow provides a validated, high-performance, and environmentally conscious approach for routine GA quantification, suitable for food-safety monitoring, regulatory compliance and breeding programme applications. Ključne besede: α-chaconine, α-solanine, analytical method, HPLC-DAD, potato tubers, environmental sustainability Objavljeno v DiRROS: 10.06.2026; Ogledov: 183; Prenosov: 210
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3. NIB-SI/unitato: v1.1 : Version v1.1Maja Zagorščak, Nadja Franziska Nolte, Mojca Juteršek, 2024, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: UniTato: a web server for evidence and community based Unification of poTato gene models Ključne besede: bioinformatics analysis, plant genome annotation, gene model annotations, Phureja group, GFF files, poTato genome model, UniTato Objavljeno v DiRROS: 08.05.2026; Ogledov: 307; Prenosov: 375
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4. Jasmonic acid and salicylic acid interact to determine spatial regulation of gene expression responses in potato leaf to herbivory by Colorado potato beetle and mechanical wounding : version v1Valentina Levak, Tjaša Mahkovec Povalej, Karmen Pogačar, Katja Stare, Maja Zagorščak, Tim Hawkins, Joanne Robson, David Dobnik, Tjaša Lukan, Kristina Gruden, 2025, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: Raw supporting material for article Jasmonic acid and salicylic acid interact to determine spatial regulation of gene expression responses in potato leaf to herbivory by Colorado potato beetle and mechanical wounding. Ključne besede: potato, jasmonic acid, salicylic acid, Colorado potato beetle, plant response to wounding Objavljeno v DiRROS: 08.05.2026; Ogledov: 244; Prenosov: 320
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5. Metadata from: Functionality of potato virus Y coat protein in cell-to-cell movement dynamics is defined by its N-terminal regionAnže Vozelj, Tjaša Mahkovec Povalej, Katja Stare, Magda Tušek-Žnidarič, Katarina Bačnik, Valentina Levak, Ion Gutiérrez-Aguirre, Marjetka Podobnik, Kristina Gruden, Anna Coll Rius, Tjaša Lukan, 2025, zaključena znanstvena zbirka raziskovalnih podatkov Ključne besede: potato virus Y, coat protein, viral movement, point mutations, Solanum tuberosum Objavljeno v DiRROS: 31.03.2026; Ogledov: 385; Prenosov: 409
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6. Detecting nematodes in potato plants : An explainable machine learning approach for detection of potato cyst nematode infections using hyperspectral imagingJanez Lapajne, Nik Susič, Andrej Vončina, Barbara Gerič Stare, Nicole Viaene, Jonathan Van Beek, David Nuyttens, Saša Širca, Uroš Žibrat, 2025, izvirni znanstveni članek Ključne besede: hyperspectral imaging, machine learning, potato plant, potato, potato cyst nematodes Objavljeno v DiRROS: 26.03.2026; Ogledov: 415; Prenosov: 319
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7. Jasmonic acid and salicylic acid interact to determine spatial regulation of gene expression responses in potato leaf to herbivory by Colorado potato beetle and mechanical woundingValentina Levak, Tjaša Mahkovec Povalej, Karmen Pogačar, Katja Stare, Maja Zagorščak, Tim Hawkins, Joanne Robson, David Dobnik, Tjaša Lukan, Kristina Gruden, 2025, izvirni znanstveni članek Povzetek: We investigated the spatial dynamics of potato (Solanum tuberosum) responses to herbivory and mechanical wounding. We first followed the spatiotemporal response of jasmonic acid (JA) signaling, known to be involved in the response. We generated two potato sensor lines: a JAZ degradation sensor and a downstream multicystatin (MC) transcriptional reporter. Both sensors revealed concentric, locally restricted responses on wounded leaves. Notably, JAdependent gene expression was absent in cells immediately adjacent to the wound, whereas JAZ degradation spread continuously outward from the wound site. This pattern occurred after both herbivore attack and mechanical injury by the needle. To probe the mechanism, a salicylic acid (SA) reporter showed SA accumulation near the wound. Introducing the MC reporter into SA-depleted NahG plants produced a uniform spread of MC expression, confirming that SA attenuates the JA response in proximal cells. Together, these results show that a locally distinct, spatiotemporal SA–JA crosstalk shapes wound responses in potato, extending principles known from pathogen–plant interactions to herbivory and mechanical damage. Ključne besede: Colorado potato beetle, herbivore, hormonal crosstalk, jasmonic acid, potato, salicylic acid, wounding Objavljeno v DiRROS: 28.01.2026; Ogledov: 583; Prenosov: 568
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8. Functionality of potato virus Y coat protein in cell-to-cell movement dynamics is defined by its N-terminal regionAnže Vozelj, Tjaša Mahkovec Povalej, Katja Stare, Magda Tušek-Žnidarič, Katarina Bačnik, Valentina Levak, Ion Gutiérrez-Aguirre, Marjetka Podobnik, Kristina Gruden, Anna Coll Rius, Tjaša Lukan, 2025, izvirni znanstveni članek Povzetek: Potato virus Y (PVY) is one of the top 10 economically most important plant viruses and responsible for major yield losses. We previously suggested the involvement of the N-terminal region of PVY coat protein (CP) in PVY spread. By constructing different N-terminal deletion mutants of the PVY N605 strain, we here show that deletions of 40 or more amino acid residues from the N-terminal region of the CP resulted in the PVY multiplication limited to primary infected cells in Nicotiana clevelandii plants. Deletion of 26 residues profoundly impaired PVY cell-to-cell movement and prevented systemic PVY spread, while deletions of 19-23 residues allowed delayed systemic PVY spread. Introduced point mutations in the identified region prevent (S21G) or delay (G20P) PVY movement. In summary, this work shows the significance of the CP N-terminus for movement of the PVY. Ključne besede: potato virus Y, potato, coat proteins, viral movement, point mutations Objavljeno v DiRROS: 18.12.2025; Ogledov: 1177; Prenosov: 579
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9. Glycoalkaloids in potato : a comprehensive overview of accumulation, detection and mitigation strategiesPeter Dolničar, Lovro Sinkovič, 2025, izvirni znanstveni članek Ključne besede: potato, α-Chaconine, α-Solanine, analytical methods, detection sensitivity, fod safety Objavljeno v DiRROS: 12.11.2025; Ogledov: 986; Prenosov: 420
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10. Chloroplast redox state changes indicate cell-to-cell signalling during the hypersensitive response : version v3Tjaša Lukan, Kristina Gruden, Anže Županič, Tjaša Mahkovec Povalej, 2021, zaključena znanstvena zbirka raziskovalnih podatkov Povzetek: We performed detailed spatiotemporal analysis of chloroplast redox response to potato virus Y (PVY) infection in resistant Ny‐1-gene-bearing potato and its transgenic counterpart with impaired SA accumulation and compromised resistance. We found that the chloroplasts are highly oxidized in the cells adjacent to the cell death zone at different stages after virus inoculation in both genotypes. This hypothesis is further supported by highly induced formation of stroma filled tubules that extend from chloroplasts (stromules) in the cells adjacent to signalling cells. This dataset s a deposit of all the raw microscopy images of the study, plus the relevant metadata in ISA-tab compliant folder structure. After receiving reviews, we have made an additional experiment using a ROS inhibitor. The raw and processed data for this is in a separate file: _S_chlROS_inhibitor.zip Ključne besede: cell signalling, chloroplasts, microscopy, ISA-tab, potato virus Y, redox responses, cell death, spatiotemporal analysis Objavljeno v DiRROS: 24.10.2025; Ogledov: 853; Prenosov: 573
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