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Iskalni niz: "ključne besede" (species) .

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11.
Bryophyte diversity, composition and functional traits in relation to bedrock and tree species composition in close-to-nature managed forests
Lado Kutnar, Janez Kermavnar, Marko S. Sabovljević, 2023, izvirni znanstveni članek

Povzetek: Bryophytes respond to a variety of environmental factors, including tree species composition and geological conditions, which are influenced by both natural and anthropogenic factors. Bryophytes growing on a variety of substrates were identified in ICP Forests monitoring plots in a wide range of close-to-nature managed forests, from lowland to high mountain areas in Slovenia. Based on data on tree layer composition (broadleaves vs. conifers) and on bedrock and soil type (calcareous vs. siliceous bedrock), all study plots were classified into five groups representing forest types. Different ordination analyses and statistical tests were used to represent differences between forest types in bryophyte composition, richness and functional traits. Almost 200 bryophyte species were identified in managed forests, with the most common being Hypnum cupressiforme, Brachytheciastrum velutinum and Polytrichum formosum. Bryophyte species composition varied considerably along the tree species composition and edaphic gradients represented by the selected forest types. Bryophyte species richness was significantly higher on calcareous bedrock than on siliceous bedrock. The higher occurrence of rocks on the ground surface may significantly increase the availability of various microhabitats for bryophytes. Bedrock had a significant influence on the functional diversity and composition of bryophytes, while tree species composition had less influence. Bedrock and tree species composition are important drivers of bryophyte species composition and diversity at taxonomic and functional trait levels. The high diversity of bryophyte species in Slovenian forests can also be attributed to close-to-nature and sustainable forest management practices that preserve favourable microclimatic conditions in forest stands and maintain diverse substrates.
Ključne besede: mosses, species richness, functional diversity, site conditions, overstory, sustainable managed forests, European temperate zone
Objavljeno v DiRROS: 31.07.2024; Ogledov: 96; Prenosov: 122
.pdf Celotno besedilo (6,99 MB)
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12.
Recent ostracods (Crustacea: Ostracoda) of Alpine springs and adjacent springbrooks of the Southern Limestone Alps, Slovenia
Nataša Mori, 2015, izvirni znanstveni članek

Povzetek: The ecology and distribution of ostracods in Alpine springs and springbrooks from Slovenia is presented. Benthos sampling was performed and major environmental characteristics (discharge, substrate composition, temperature, dissolved oxygen, conductivity, pH, alkalinity, sulphate, nitrate, calcium, magnesium) were measured in 12 springs and adjacent springbrooks. Sampling campaign was carried out on six sampling occasions (spring, summer, autumn in 2009 and 2010). Fourteen ostracod species were found among other fauna. The commonest and most abundant species were Psychrodromus fontinalis (Wolf, 1920) and Cavernocypris subterranea (Wolf, 1920), while the other species occurred at one or two sites at the most. Substrate composition and water temperature were statistically significant variables in explaining ostracod assemblages composition in this study.
Ključne besede: microcrustacea, species-environment relationship, biodiversity, distribution
Objavljeno v DiRROS: 29.07.2024; Ogledov: 105; Prenosov: 74
.pdf Celotno besedilo (477,85 KB)
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13.
Clinitrachus argentatus (Risso, 1810) (Perciformes: Clinidae) - a less known fish species in Slovenian coastal waters (Adriatic Sea)
Martina Orlando-Bonaca, Domen Trkov, 2016, izvirni znanstveni članek

Povzetek: The data regarding the occurrence of the Cline (Clinitrachus argentatus) in the Adriatic Sea are scarce, limited and sporadic. In the Slovenian sea only three specimens were observed in the past decades. The paper presents new findings of the species from 2013 to 2016, when some specimens were occasionally manually collected in shallow waters. Data about habitat preferences, depth range, total lengths and meristic counts are reported. The aim of the study is also to discuss the reasons for the underestimation of the occurrence of C. argentatus in the area.
Ključne besede: fishes, shallow waters, overlooked species, habitat preferences, Adriatic Sea
Objavljeno v DiRROS: 26.07.2024; Ogledov: 119; Prenosov: 66
.pdf Celotno besedilo (1,21 MB)
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14.
Novel, male-produced aggregation pheromone of the cerambycid beetle Rosalia alpina, a priority species of European conservation concern
Alenka Žunič Kosi, Yunfan Zou, Michal Hoskovec, Al Vrezec, Nataša Stritih Peljhan, Jocelyn G. Millar, 2017, izvirni znanstveni članek

Povzetek: Several recent studies have demonstrated the great potential for exploiting semiochemicals in ecology and conservation studies. The cerambycid beetle Rosalia alpina represents one of the flagship species of saproxylic insect biodiversity in Europe. In recent years its populations appear to have declined substantially, and its range has shrunk considerably as a result of forest management and urbanization. Here, we collected volatile chemicals released by males and females of R. alpina. Analyses of the resulting extracts revealed the presence of a single male-specific compound, identified as a novel alkylated pyrone structure. In field bioassays in Slovenia, traps baited with the synthesized pyrone captured both sexes of R. alpina, indicating that the pyrone functions as an aggregation pheromone. Our results represent the first example of a new structural class of pheromones within the Cerambycidae, and demonstrate that pheromone-baited traps can provide a useful tool for sampling R. alpina. This tool could be particularly useful in the ongoing development of conservation strategies for the iconic but endangered Alpine longicorn.
Ključne besede: pheromones, beetles, plants, endangered species, conservation science
Objavljeno v DiRROS: 25.07.2024; Ogledov: 114; Prenosov: 259
.pdf Celotno besedilo (6,56 MB)
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15.
Contrasting effects of altitude on species groups with different traits in a non-fragmented montane temperate forest
Maarten De Groot, Al Vrezec, 2019, izvirni znanstveni članek

Povzetek: Temperature has strong effects on species composition and traits. These effects can differ within and between species groups. Thermoregulation and mobility are traits which can be strongly affected by altitudinal distribution. Our aim was to investigate the influence of altitude on the species richness, abundance and composition of species groups with different trophic, thermoregulatory and mobility traits. Carabids (Coleoptera; Carabidae), hoverflies (Diptera: Syrphidae) and birds (Aves: Passeriformes) were counted in three altitudinal belts with a total elevation difference of 700 m (from 300 m to 1000 m a.s.l.) in the same habitat type (non-fragmented temperate montane mixed beech and fir forest). We found that endotherms and more mobile species (i.e. birds) had a smaller turnover than ectotherms (i.e. hoverflies) and less mobile species (i.e. carabids), from which we can predict that the former species will undergo a less extreme shift than the latter in global warming scenarios. Species turnover across the altitudinal gradient increased from birds to hoverflies to carabid beetles. The effect of altitude on phenology was different between the studied ectotherm species groups (carabids and hoverflies). Hoverflies experience a phenological delay of species richness and abundance at higher altitudes in spring, but not at the end of summer, which implies that hoverfly phenology is affected by a change in temperature, while carabid beetle abundance exhibited a delay in phenology in summer at higher altitudes. We suggest that species that are expected to be most affected by climate change, such as ectotherms and species with poor dispersal ability should be prioritised as the best indicators for monitoring and conservation management purposes.
Ključne besede: climate change, Carabidae, Syrphidae, Aves, altitudinal gradient, species assemblage
Objavljeno v DiRROS: 24.07.2024; Ogledov: 97; Prenosov: 63
.pdf Celotno besedilo (1,69 MB)
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16.
A taxonomic monograph of the liphistiid spider genus Heptathela, endemic to Japanese islands
Xin Xu, Hirotsugu Ono, Matjaž Kuntner, Fengxiang Liu, Daiqin Li, 2019, izvirni znanstveni članek

Povzetek: Among the eight extant genera of primitively segmented spiders, family Liphistiidae, two are confined to East Asian islands, Heptathela Kishida, 1923 and Ryuthela Haupt, 1983. In this paper, a taxonomic revision of the genus Heptathela (Heptathelinae) from Kyushu and Ryukyu archipelago, Japan is provided. This study follows a multi-tier species delimitation strategy within an integrative taxonomic framework that is presented in a parallel paper, in which diagnosable lineages are considered as valid species. There, the initial hypothesis of species diversity (19) based on classical morphological diagnoses is tested with multiple species delimitation methods aimed at resolving conflict in data. This revision follows those analyses that converge on the species diversity of 20, which includes a pair of cryptic species that would have been undetected with morphology alone. After this revision, eight previously described species remain valid, two junior synonyms are proposed, and 12 new Heptathela species are described based on diagnostic evidence. To ease identification and to hint at putative evolutionary units, Heptathela is divided into three groups. The Kyushu group contains H. higoensis Haupt, 1983, H. kikuyai Ono, 1998, H. kimurai (Kishida, 1920), and H. yakushimaensis Ono, 1998; the Amami group contains H. amamiensis Haupt, 1983, H. kanenoi Ono, 1996, H. kojima sp. nov., H. sumiyo sp. nov., and H. uken sp. nov.; and the Okinawa group contains H. yanbaruensis Haupt, 1983, H. aha sp. nov., H. gayozan sp. nov., H. kubayama sp. nov., H. mae sp. nov., H. otoha sp. nov., H. shuri sp. nov., H. tokashiki sp. nov., H. unten sp. nov., and H. crypta sp. nov. Heptathela helios Tanikawa & Miyashita, 2014 is not assigned to a species group. A combination of diagnostic tools augments the morphological diagnoses that, in isolation, would be prone to error in morphologically challenging groups of organisms.
Ključne besede: Heptathelinae, island endemism, Kyushu, Ryukyu archipelago, species delimitation, trapdoor spiders
Objavljeno v DiRROS: 24.07.2024; Ogledov: 100; Prenosov: 101
.pdf Celotno besedilo (22,17 MB)
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17.
Non-indigenous species in the Mediterranean Sea : turning from pest to source by developing the 8Rs model, a new paradigm in pollution mitigation
Ana Rotter, Katja Klun, Janja Francé, Patricija Mozetič, Martina Orlando-Bonaca, 2020, izvirni znanstveni članek

Povzetek: For mitigation of the effects of pollution, the media, policy makers and, in turn, the scientific community and industry each provide contributions through development of a sense of urgency, and with guidelines and solutions. For non-indigenous species (NIS) that can frequently have negative impacts on the native biota, this is often conveyed in an emotive way to the general public, who are typically keen to help and to get personally involved. This might be through organization of cleaning campaigns, influence on the media, or collaboration with scientists, to inform them of the local presence and abundance of NIS. Alternatively, they might proactively develop technological solutions themselves. To assess the current state of affairs, we reviewed the presence and effects of NIS in the Mediterranean Sea. As so often, any well-planned and successful activity is directly linked to financing, or a lack thereof, and this leads to sometimes untargeted and sporadic measures that are developed within a project or over a limited timeframe, without any sustainability measures. Therefore, we also assessed the activities and strategies that have been financed in this area of NIS mitigation. Based on this review of the presence and impact of NIS, and previous and ongoing activities, we propose a new paradigm to mitigate such pollution: the 8Rs model (i.e., Recognize, Reduce, Replace, Reuse, Recycle, Recover/Restore, Remove, and Regulate). This model extends from the more traditional 3Rs model (i.e., Reduce, Reuse, and Recycle) that is often used and promoted for innovative waste management strategies. Importantly, the 8Rs model can be applied sequentially, for either prevention of NIS introduction, or preparation of mitigation measures. The 8Rs model was constructed based on Mediterranean NIS, although we believe it can be applied to other sources of pollution and other geographic areas. Importantly, the 8Rs model represents a general framework to organize and categorize future pollution mitigation strategies. This approach is essential for development of any action plan to influence the administrative and financial decision makers who essentially enable these activities, and therefore who have important roles in the guarantee of sustainability of these actions, and the creation of innovative societies.
Ključne besede: non-indigenous species, pollution mitigation, pollution mitigation, 8Rs model, quadruple helix, Mediterranean Sea, citizen science, communication, sustainability
Objavljeno v DiRROS: 22.07.2024; Ogledov: 116; Prenosov: 116
.pdf Celotno besedilo (2,04 MB)
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18.
A marine biodiversity observation network for genetic monitoring of hard-bottom communities (ARMS-MBON)
Matthias Obst, Katrina Exter, A. Louise Allcock, Christos Arvanitidis, Alizz Axberg, Maria Bustamante, Ana Fortič, Borut Mavrič, Andreja Ramšak, 2020, izvirni znanstveni članek

Povzetek: Marine hard-bottom communities are undergoing severe change under the influence of multiple drivers, notably climate change, extraction of natural resources, pollution and eutrophication, habitat degradation, and invasive species. Monitoring marine biodiversity in such habitats is, however, challenging as it typically involves expensive, non-standardized, and often destructive sampling methods that limit its scalability. Differences in monitoring approaches furthermore hinders inter-comparison among monitoring programs. Here, we announce a Marine Biodiversity Observation Network (MBON) consisting of Autonomous Reef Monitoring Structures (ARMS) with the aim to assess the status and changes in benthic fauna with genomic-based methods, notably DNA metabarcoding, in combination with image-based identifications. This article presents the results of a 30-month pilot phase in which we established an operational and geographically expansive ARMS-MBON. The network currently consists of 20 observatories distributed across European coastal waters and the polar regions, in which 134 ARMS have been deployed to date. Sampling takes place annually, either as short-term deployments during the summer or as long-term deployments starting in spring. The pilot phase was used to establish a common set of standards for field sampling, genetic analysis, data management, and legal compliance, which are presented here. We also tested the potential of ARMS for combining genetic and image-based identification methods in comparative studies of benthic diversity, as well as for detecting non-indigenous species. Results show that ARMS are suitable for monitoring hard-bottom environments as they provide genetic data that can be continuously enriched, re-analyzed, and integrated with conventional data to document benthic community composition and detect non-indigenous species. Finally, we provide guidelines to expand the network and present a sustainability plan as part of the European Marine Biological Resource Centre (www.embrc.eu).
Ključne besede: benthic invertebrates, Marine Strategy Framework Directive (MSFD), Essential Biodiversity Variables (EBVs), Essential Ocean Variables (EOVs), European Marine Biological Resource Centre (EMBRC), non-indigenous species (NIS), genomic observatories, marine biodiversity assessment
Objavljeno v DiRROS: 22.07.2024; Ogledov: 148; Prenosov: 122
.pdf Celotno besedilo (1,80 MB)
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19.
Arsenic in sediments, soil and plants in a remediated area of the Iron Quadrangle, Brazil, and its accumulation and biotransformation in Eleocharis geniculata
Maria-Angela Menezes, Ingrid Falnoga, Zdenka Šlejkovec, Radojko Jaćimović, Nilton Couto, Eleonora Deschamps, Jadran Faganeli, 2020, izvirni znanstveni članek

Povzetek: Since arsenic (As) exposure is largely due to geochemical contamination, this study focused on the remediated area of Santana do Morro, a district of Santa Bárbara, Minas Gerais, Brazil, which was previously contaminated with As due to gold mining. Total As concentrations in sediment, soil and plants were determined, next to As species, anionic arsenic compounds As(III), As(V), monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA), in plants samples. Total As concentrations in soil and sediments were slightly elevated (16-18 µg g-1) and most of the plants contained low levels of As (< 1 µg g-1). The exception was a native plant Eleocharis geniculata (L.) which contained elevated levels of As (4 µg g-1). The exposure of this plant to As under controlled conditions (hydroponics) indicated its possible tolerance to elevated As levels and suggesting its potential use in phytomonitoring of As-contaminated sites. This plant is able to metabolize arsenate to arsenite and contained MMA and DMA, both in its natural habitat and under controlled conditions.
Ključne besede: arsenic species, soil, sediments, plants, Cyperacea, Iron Quadrangle
Objavljeno v DiRROS: 22.07.2024; Ogledov: 123; Prenosov: 64
.pdf Celotno besedilo (389,96 KB)
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20.
Precision transcriptomics of viral foci reveals the spatial regulation of immune-signaling genes and identifies RBOHD as an important player in the incompatible interaction between potato virus Y and potato
Tjaša Lukan, Maruša Pompe Novak, Špela Baebler, Magda Tušek-Žnidarič, Aleš Kladnik, Maja Križnik, Andrej Blejec, Maja Zagorščak, Katja Stare, Barbara Dušak, Anna Coll Rius, Stephan Pollmann, Karolina Morgiewicz, Jacek Hennig, Kristina Gruden, 2020, izvirni znanstveni članek

Povzetek: Whereas the activation of resistance (R) proteins has been intensively studied, the downstream signaling mechanisms leading to the restriction of the pathogen remain mostly unknown. We studied the immunity network response conditioned by the potato Ny-1 gene against potato virus Y. We analyzed the processes in the cell death zone and surrounding tissue on the biochemical and gene expression levels in order to reveal the spatiotemporal regulation of the immune response. We show that the transcriptional response in the cell death zone and surrounding tissue is dependent on salicylic acid (SA). For some genes the spatiotemporal regulation is completely lost in the SA-deficient line, whereas other genes show a different response, indicating multiple connections between hormonal signaling modules. The induction of NADPH oxidase RBOHD expression occurs specifically on the lesion border during the resistance response. In plants with silenced RBOHD, the functionality of the resistance response is perturbed and the spread of the virus is not arrested at the site of infection. RBOHD is required for the spatial accumulation of SA, and conversely RBOHD is under the transcriptional regulation of SA. Using spatially resolved RNA-seq, we also identified spatial regulation of an UDP-glucosyltransferase, another component in feedback activation of SA biosynthesis, thus deciphering a novel aspect of resistance signaling.
Ključne besede: immune signaling network, NADPH oxidase RBOHD, reactive oxygen species, salicylic acid, Sola-num tuberosum (potato), spatiotemporal response analysis, virus resistance, Potyvirus
Objavljeno v DiRROS: 22.07.2024; Ogledov: 129; Prenosov: 106
.pdf Celotno besedilo (2,87 MB)
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