1. Significance of nuclear factor - kappa beta activation on prostate needle biopsy samples in the evaluation of Gleason score 6 prostatic carcinoma indolenceMarko Zupančič, Boris Pospihalj, Snežana Cerović, Barbara Gazić, Primož Drev, Marko Hočevar, Andraž Perhavec, 2020, izvirni znanstveni članek Povzetek: The goal of our study was to find out whether the immunohistochemical expression of nuclear factor-kappa beta (NF-%B) p65 in biopsy samples with Gleason score 3 + 3 = 6 (GS 6) can be a negative predictive factor for Prostate cancer (PCa) indolence. Patients and methods Study was conducted on a retrospective cohort of 123 PCa patients with initial total PSA % 10 ng/ml, number of needle biopsy specimens % 8, GS 6 on biopsy and T1/T2 estimated clinical stage who underwent laparoscopic radical prostatectomy and whose archived formalin-fixed and paraffin-embedded (FFPE) prostate needle biopsy specimens were used for additional immunohistochemistry staining for detection of NF-%B p65. Both cytoplasmic and nuclear NF-%B p65 expression in biopsy cores with PCa were correlated with postoperative pathological stage, positive surgical margins, GS and biochemical progression of disease. Results After follow-up of 66 months, biochemical progression (PSA % 0.2 ng/ml) occurred in 6 (5.1%) patients, 3 (50%) with GS 6 and 3 (50%) with GS 7 after radical prostatectomy. Both cytoplasmic and nuclear NF-%B p65 expressions were not significantly associated with pathological stage, positive surgical margin and postoperative GS. Patients with positive cytoplasmic NF-kB reaction had significantly more frequent biochemical progression than those with negative cytoplasmic NF-kB reaction with PSA 0.2 ng/ml as cutoff point (p = 0.015) and a trend towards more biochemical progression with PSA % 0.05 ng/ml as cutoff point (p = 0.068). Conclusions Cytoplasmic expression of NF-%B is associated with more biochemical progression and might be an independent prognostic factor for recurrence-free survival (RFS), but further studies including larger patient cohorts are needed to confirm these initial results. Ključne besede: prostate cancer, needle biopsy, nuclear factor-kappa beta, Gleason Objavljeno v DiRROS: 12.07.2024; Ogledov: 126; Prenosov: 64
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2. Mixed signals of environmental change and a trend towards ecological homogenization in ground vegetation across different forest typesJanez Kermavnar, Lado Kutnar, 2024, izvirni znanstveni članek Povzetek: Forest ground vegetation may serve as an early warning system for monitoring anthropogenic global-change impacts on temperate forests. Climate warming may induce a decline of cool-adapted species to the benefit of more thermophilous plants. Nitrogen deposition has been documented to potentially result in soil eutrophication or acidification, which can increase the proportion of species with higher nutrient requirements and species impoverishment caused by competitive exclusion. Abiotic forest disturbances are changing the light conditions in the forest understorey environment. In this resurvey study, we tested the magnitude and direction of change in alpha (species richness) and beta (within-site dissimilarity) diversity and composition of forest ground vegetation in forests of different types in Slovenia over fifteen years. Using plant-derived characteristics (Ellenberg-type indicator values) and by testing a priori predictions concerning expected effects of environmental drivers, we show that the magnitude and direction of forest ground vegetation diversity and floristic changes varies greatly between forest sites. Divergent responses at different sites resulted in low net change of alpha and beta diversity and a weak overall environmental signal. The largest decrease in species number was observed in lowland oak-hornbeam forests, which were also among the sites with the greatest compositional shifts. Changes in beta diversity did not show any consistent trend, and anticipated floristic convergence was not confirmed when all sites were considered. Thermophilization was mainly detected in montane beech sites and alpine spruce forests whereas eutrophication signal was most significant on nutrient-poor sites. Vegetation responses were strongly dependent on initial site conditions. Shrinkage of ecological gradients (process of ecological homogenization) suggests that sites positioned at the ends of the gradients are losing their original ecological character and are becoming more similar to mid-gradient sites that generally exhibit smaller changes. Our results point to the importance of local stand dynamics and overstorey disturbances in explaining the temporal trends in forest ground vegetation. Ground vegetation in Slovenian forests is changing in directions also dictated by multiple regional and global change drivers. Ključne besede: vegetation resurvey, thermophilization, eutrophication, forest disturbances, alpha and beta diversity, initial site conditions, ICP-Forests network Objavljeno v DiRROS: 09.04.2024; Ogledov: 441; Prenosov: 229
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3. Biological activity of rat fibroblast interferon beta1993, izvirni znanstveni članek Povzetek: The biological activity of rat fibroblast beta interferon was studied. Rat embryonal fibroblasts (Wistar strain-WiREF) were used as a source of interferon. Cells were grown in suspension and on the microcarries (Cytodex 3). In the exponential phase of cell growth the induction was performed. The biological activity of the obtained interferon was tested on the homologous cells. Interferon's influence on cell growth, morphology and intracellular level of some hydrolases was measured. Ključne besede: fibroblasts-drug effects, interferon-beta, rats Objavljeno v DiRROS: 10.01.2024; Ogledov: 371; Prenosov: 88
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4. Differences in ratio of carbon stable Isotopes among barley grain milling fractions with various concentrations of beta-glucansTom Levanič, Blaž Cigić, Mateja Germ, Ivana Polišenská, Kateřina Vaculová, Igor Pravst, Darja Kocjan Ačko, Ivan Kreft, 2023, izvirni znanstveni članek Povzetek: The grains of three barley varieties were milled and sieved to obtain respective milling fractions with a content of beta-glucans (b-G) from 1.4 to 10.7%. The enriched fraction obtained by the extraction and precipitation contained 24.7% of b-G. The differences between the ratio of stable C carbon isotopes were established. Milling fractions with coarse particles had more beta-glucans and a more negative ratio of δ 13C isotope in comparison to the respective intact barley grain. However, the enriched fraction had a less negative isotope ratio. So, it is not expected that the deviation from the stable isotope ratio of grain in milling fractions is the result of the content of b-G, but it depends on other barley grain constituents. In different parts of barley grain, there are substances with different stable isotope ratios, and by milling and sieving, they are assorted to the same milling fraction with most of the b-G. The method for determining the ratio of a stable carbon isotope in diverse barley grain fractions, applied in this investigation, is potentially opening the possibility for an additional method of screening the concentration of bioactive constituents in barley grain. Ključne besede: beta-glucans, starch, barley, stable isotopes, nutrition, milling Objavljeno v DiRROS: 02.08.2023; Ogledov: 615; Prenosov: 292
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5. Brain dynamics underlying preserved cycling ability in patients with Parkinson’s disease and freezing of gaitTeja Ličen, Martin Rakuša, Nicolaas I. Bohnen, Paolo Manganotti, Uroš Marušič, 2022, pregledni znanstveni članek Povzetek: Parkinson’s disease (PD) is generally associated with abnormally increased beta band oscillations in the cortico-basal ganglia loop during walking. PD patients with freezing of gait (FOG) exhibit a more distinct, prolonged narrow band of beta oscillations that are locked to the initiation of movement at ∼18 Hz. Upon initiation of cycling movements, this oscillation has been reported to be weaker and rather brief in duration. Due to the suppression of the overall beta band power during cycling and its continuous nature of the movement, cycling is considered to be less demanding for cortical networks compared to walking, including reduced need for sensorimotor processing, and thus unimpaired continuous cycling motion. Furthermore, cycling has been considered one of the most efficient non-pharmacological therapies with an influence on the subthalamic nucleus (STN) beta rhythms implicative of the deep brain stimulation effects. In the current review, we provide an overview of the currently available studies and discuss the underlying mechanism of preserved cycling ability in relation to the FOG in PD patients. The mechanisms are presented in detail using a graphical scheme comparing cortical oscillations during walking and cycling in PD. Ključne besede: gait, freezing of gait, Parkinson's disease, cycling, cortical oscillations, beta band Objavljeno v DiRROS: 21.06.2022; Ogledov: 726; Prenosov: 585
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6. The effects of topical antibiotics on eradication and acquisition of third-generation cephalosporin and carbapenem-resistant Gram-negative bacteria in ICU patients : ǂa ǂpost hoc analysis from a multicentre cluster-randomized trialNienke L. Plantinga, Bastiaan H. Wittekamp, Christian Brun-Buisson, Marc J. M. Bonten, 2020, izvirni znanstveni članek Povzetek: Objectives: The aim was to quantify the effects of selective digestive tract decontamination (SDD) consisting of a mouth paste and gastro-enteral suspension, selective oropharyngeal decontamination with a mouth paste (SOD) and 1-2% chlorhexidine (CHX) mouthwash on eradication and acquisition of carriage of third-generation cephalosporin-resistant Enterobacterales (3GCR-E) and carbapenem-resistant Gram-negative bacteria (CR-GNB) in Intensive Care Unit (ICU) patients. Methods: This was a nested cohort study within a cluster-randomized cross-over trial in six European countries and 13 ICUs with 8665 patients. Eradication and acquisition during ICU stay of 3GCR-E and CRGNB were investigated separately in the rectum and respiratory tract for the three interventions and compared with standard care (SC) using Cox-regression competing events analyses. Results: Adjusted cause specific hazard ratios (CSHR) for eradication of rectal carriage for SDD were 1.76 (95% CI 1.31-2.36) for 3GCR-E and 3.17 (95% CI 1.60-6.29) for CR-GNB compared with SC. For the respiratory tract, adjusted CSHR for eradication of 3GCR-E were 1.47 (0.98-2.20) for SDD and 1.38 (0.92-2.06) for SOD compared with SC, and for eradication of CR-GNB these were 0.77 (0.41-1.45) for SDD and 0.81 (0.44-1.51) for SOD, compared with SC. Adjusted CSHRs for acquisition of rectal carriage during SDD (compared with SC) were 0.51 (0.40-0.64) for 3GCR-E and of 0.56 (0.40-0.78) for CR-GNB. Adjusted CSHRs for acquiring respiratory tract carriage with 3GCR-E compared with SC were 0.38 (0.28-0.50) for SDD and 0.55 (0.42-0.71) for SOD, and for CR-GNB 0.46 (0.33-0.64) during SDD and 0.60 (0.44-0.81) during SOD, respectively. SOD was not associated with eradication or acquisition of 3GCR-E and CR-GNB in the rectum. Conclusions: Among mechanically ventilated ICU patients, SDD was associated with more eradication and less acquisition of 3GCR-E and CR-GNB in the rectum than SC. SDD and SOD were associated with less acquisition of both 3GCR-E and CR-GNB than SC in the respiratory tract. Ključne besede: intensive care units -- analysis -- epidemiology, bacterial drug resistance, anti-infective agents -- therapeutic use decontamination, beta-lactamases, Gram-negative bacteria, gastrointestinal tract -- microbiology -- drug therapy, cohort studies, colonization, ESBL, digestive tract Objavljeno v DiRROS: 27.05.2022; Ogledov: 713; Prenosov: 276
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7. Štiri posplošitve porazdelitve betaAnton Cedilnik, 1993, izvirni znanstveni članek Povzetek: Porazdelitve, opisane v tem sestavku, imajo isti kompleksno analitični funkcijski izraz kot običajna porazdelitev beta, nosilci pa so omejeni, na eno stran omejeni ali neomejeni intervali. Te porazdelitve analiziramo, izračunamo momente, določimo racionalne transformacije in izpeljemo še nekaj limitnih izrekov. Ključne besede: matematika, verjetnostni račun, porazdelitev beta, limitni izreki Objavljeno v DiRROS: 12.07.2017; Ogledov: 4516; Prenosov: 1865
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