| Naslov: | PBPKO : an ontology for standardizing and harmonizing physiologically based pharmacokinetic (PBPK) models |
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| Avtorji: | ID Kumar, Saurav (Avtor)
ID Panov, Panče, Institut "Jožef Stefan" (Avtor)
ID Kumar, Vikas (Avtor), et al. |
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| Datoteke: |  URL - Izvorni URL, za dostop obiščite https://www.sciencedirect.com/science/article/pii/S2468111326000460?via%3Dihub
 PDF - Predstavitvena datoteka, prenos (4,94 MB)
MD5: 67D28B39FD6771705291EA9013FC3391
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| Jezik: | Angleški jezik |
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| Tipologija: | 1.01 - Izvirni znanstveni članek |
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| Organizacija: |  IJS - Institut Jožef Stefan
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| Povzetek: | Physiologically Based Pharmacokinetic (PBPK) Modelling have emerged as a critical method in pharmaceutical and environmental sciences. Despite its widespread adoption, inconsistent vocabulary used across models, software platforms, and literature remains a significant challenge. Such inconsistency limits the potential for data harmonization and model interoperability. This gap also hinders the adoption of machine-readable semantic technologies that could enhance PBPK model reporting, validation, and interoperability. To address this gap, we developed PBPKO (Physiologically Based Pharmacokinetic Ontology), a dedicated ontology for the kinetic modelling community. PBPKO captures mechanisms and terminology commonly used in PBPK modelling, including concepts related to physiological parameters, biochemical parameters, biological processes, enzymes, transporters, and related concepts. As of release of v2026-07-15, the ontology comprises 858 classes and 7 object properties native to PBPKO. To support semantic interoperability within the broader biomedical ontology ecosystem, PBPKO is aligned with upper-level ontologies such as the Basic Formal Ontology (BFO) and the Relation Ontology (RO), and reuses terms from established resources including Gene Ontology (GO) and the Ontology for Biomedical Investigations (OBI). |
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| Ključne besede: | mathematical modelling, visualization types, physiologically based pharmacokinetic model, semantics, ontology |
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| Status publikacije: | Objavljeno |
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| Verzija publikacije: | Objavljena publikacija |
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| Poslano v recenzijo: | 11.05.2026 |
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| Datum sprejetja članka: | 11.08.2026 |
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| Datum objave: | 12.08.2026 |
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| Založnik: | Elsevier |
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| Leto izida: | 2026 |
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| Št. strani: | str. 1-9 |
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| Številčenje: | Vol. 39, 100445 |
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| Izvor: | Nizozemska |
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| PID: | 20.500.12556/DiRROS-32248  |
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| UDK: | 519.6 |
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| ISSN pri članku: | 2468-1113 |
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| DOI: | 10.1016/j.comtox.2026.100445 |
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| COBISS.SI-ID: | 288214787 |
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| Avtorske pravice: | © 2026 The Authors. |
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| Opomba: | Nasl. z nasl. zaslona;
Opis vira z dne 19. 8. 2026;
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| Datum objave v DiRROS: | 02.09.2026 |
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| Število ogledov: | 30 |
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| Število prenosov: | 20 |
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| Metapodatki: |    |
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