| Naslov: | Effect of rearing systems and dietary protein levels on the skeletal muscle histomorphology and transcriptome profiles in indigenous Krškopolje Pig : expression profiling by high throughput sequencing |
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| Avtorji: | ID Vrecl, Milka (Avtor)
ID Škrlep, Martin (Avtor)
ID Poklukar Žnidaršič, Klavdija (Avtor)
ID Fazarinc, Gregor (Avtor)
ID Štrbenc, Malan (Avtor)
ID Čandek-Potokar, Marjeta (Avtor) |
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| Datoteke: |  URL - Izvorni URL, za dostop obiščite https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE320088
Opis: Podatki nedostopni, 20. 3. 2026, dostopni po 20. 2. 2030
 PDF - Predstavitvena datoteka. (726,02 KB, Vsebina dokumenta nedostopna do 20.02.2030)
MD5: 969957605D665B3927658E5566FBD90F
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| Jezik: | Angleški jezik |
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| Tipologija: | 2.20 - Zaključena znanstvena zbirka raziskovalnih podatkov |
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| Organizacija: |  KIS - Kmetijski inštitut Slovenije
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| Povzetek: | RNA-sequencing was performed to compare the effects of production systems (conventional indoor, vs. outdoor) and diets (standard protein, HP, vs. low protein, LP) within each rearing system on the transcriptomic profiles of two skeletal muscles, longissimus thoracis et lumborum (LL) and semispinalis capitis (SSC). Differentially expressed genes (DEGs) were identified with |log2FC| > 1 and q-value < 0.005. The effect of rearing system (indoor vs. outdoor) resulted in 354 DEGs in LL and 334 DEGs in SSC. The effect of diet within individual rearing system was less pronounced. In LL, HP vs. LP resulted in 23 DEGs under indoor and none under outdoor rearing system. In SSC, HP vs. LP resulted in 28 DEGs under indoor and 30 DEGs under outdoor rearing system. Pathway enrichment analysis revealed 42 pathways significantly enriched for HP vs. LP in the outdoor rearing system (across both muscles); additionally, 11 pathways were altered specifically in SSC for HP vs. LP under indoor rearing system, and 27 pathways were altered specifically in LL for HP vs. LP under outdoor rearing system |
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| Ključne besede: | RNA sequences, pigs, adipose tissue, high throughput sequencing, RNA, transcriptome profiles, gene expression, locel breeds, hybrid breeds, data, data set |
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| Status publikacije: | Objavljeno |
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| Verzija publikacije: | Objavljena publikacija |
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| Datum objave: | 20.02.2026 |
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| Kraj izida: | Bethesda |
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| Kraj izvedbe: | Bethesda |
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| Založnik: | Gene Expression Omnibus (GEO) |
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| Leto izida: | 2026 |
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| Leto izvedbe: | 2026 |
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| Št. strani: | 1 spletni vir |
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| PID: | 20.500.12556/DiRROS-28453  |
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| UDK: | 636 |
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| COBISS.SI-ID: | 272369923 |
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| Opomba: | Nasl. z. nasl. zaslona;
Opis vira z dne 20. 3. 2026;
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| Datum objave v DiRROS: | 20.03.2026 |
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| Število ogledov: | 247 |
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| Število prenosov: | 48 |
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| Metapodatki: |    |
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