| Title: | Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée |
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| Authors: | ID Godec, Tim (Author)
ID Beier, Sebastian (Author)
ID Rodriguez-Granados, Natalia Yaneth (Author)
ID Sasidharan, Rashmi (Author)
ID Abdelhakim, Lamis (Author)
ID Teige, Markus (Author)
ID Usadel, Björn (Author)
ID Gruden, Kristina (Author)
ID Petek, Marko (Author) |
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| Files: |  URL - Source URL, visit https://doi.org/10.1038/s41597-025-05372-3
URL - Source URL, visit https://doi.org/10.1101/2025.01.14.631659
 PDF - Presentation file, download (4,47 MB)
MD5: C3E28DD9EC77486D35F04AB2AA107FD4
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| Language: | English |
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| Typology: | 1.01 - Original Scientific Article |
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| Organization: |  NIB - National Institute of Biology
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| Abstract: | Cultivar Désirée is an important model for potato functional genomics studies to assist breeding strategies. Here, we present a haplotype-resolved genome assembly of Désirée, achieved by assembling PacBio HiFi reads and Hi-C scaffolding, resulting in a high-contiguity chromosome-level assembly. We implemented a comprehensive annotation pipeline incorporating gene models and functional annotations from the Solanum tuberosum Phureja DM reference genome alongside RNA-seq reads to provide high-quality gene and transcript annotations. Additionally, we provide a genome-wide DNA methylation profile using Oxford Nanopore reads, enabling insights into potato epigenetics. The assembled genome, annotations, methylation and expression data are visualised in a publicly accessible genome browser, providing a valuable resource for the potato research community. |
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| Keywords: | cultivar Désirée, potato, functional genomics, genome assembly, annotation pipeline, DNA methylation, epigenetics |
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| Publication status: | Published |
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| Publication version: | Version of Record |
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| Publication date: | 20.06.2025 |
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| Year of publishing: | 2025 |
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| Number of pages: | Str. 1-8 |
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| Numbering: | iss. 1, [art. no.] ǂ1044 |
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| PID: | 20.500.12556/DiRROS-21370  |
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| UDC: | 575.111 |
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| ISSN on article: | 2052-4463 |
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| DOI: | 10.1038/s41597-025-05372-3 |
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| COBISS.SI-ID: | 223886083 |
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| Note: | Nasl. z nasl. zaslona;
Opis vira z dne 24. 1. 2025;
Soavtorji: Sebastian Beier, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lamis Abdelhakim, Markus Teige, Björn Usadel, Kristina Gruden, Marko Petek; |
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| Publication date in DiRROS: | 28.01.2025 |
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| Views: | 1201 |
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| Downloads: | 579 |
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