| Title: | Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée |
|---|
| Authors: | ID Godec, Tim (Author)
ID Beier, Sebastian (Author)
ID Rodriguez-Granados, Natalia Yaneth (Author)
ID Sasidharan, Rashmi (Author)
ID Abdelhakim, Lamis (Author)
ID Teige, Markus (Author)
ID Usadel, Björn (Author)
ID Gruden, Kristina (Author)
ID Petek, Marko (Author) |
|---|
| Files: |  URL - Source URL, visit https://doi.org/10.1101/2025.01.14.631659
 PDF - Presentation file, download (1,41 MB)
MD5: AF604B7FC8AFD48ABEAC0C79E285C54C
|
|---|
| Language: | English |
|---|
| Typology: | 1.25 - Other Component Parts |
|---|
| Organization: |  NIB - National Institute of Biology
|
|---|
| Abstract: | Cultivar Désirée is an important model for potato functional genomics studies to assist breeding strategies. Here, we present a haplotype-resolved genome assembly of Désirée, achieved by assembling PacBio HiFi reads and Hi-C scaffolding, resulting in a high-contiguity chromosome-level assembly. We implemented a comprehensive annotation pipeline incorporating gene models and functional annotations from the Solanum tuberosum Phureja DM reference genome alongside RNA-seq reads to provide high-quality gene and transcript annotations. Additionally, we provide a genome-wide DNA methylation profile using Oxford Nanopore reads, enabling insights into potato epigenetics. The assembled genome, annotations, methylation and expression data are visualised in a publicly accessible genome browser (https://desiree.nib.si), providing a valuable resource for the potato research community. |
|---|
| Keywords: | cultivar Désirée, potato, functional genomics, genome assembly, annotation pipeline, DNA methylation, epigenetics |
|---|
| Publication status: | Submitted to the publisher |
|---|
| Publication version: | Submitted Version |
|---|
| Publication date: | 14.01.2025 |
|---|
| Year of publishing: | 2025 |
|---|
| Number of pages: | Str. 1-15 |
|---|
| PID: | 20.500.12556/DiRROS-21370  |
|---|
| UDC: | 575.111 |
|---|
| ISSN on article: | Y509-2132 |
|---|
| DOI: | 10.1101/2025.01.14.631659 |
|---|
| COBISS.SI-ID: | 223886083 |
|---|
| Note: | Nasl. z nasl. zaslona;
Opis vira z dne 24. 1. 2025;
Soavtorji: Sebastian Beier, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lamis Abdelhakim, Markus Teige, Björn Usadel, Kristina Gruden, Marko Petek;
|
|---|
| Publication date in DiRROS: | 28.01.2025 |
|---|
| Views: | 791 |
|---|
| Downloads: | 415 |
|---|
| Metadata: |    |
|---|
|
:
|
Copy citation |
|---|
| | | | Share: |  |
|---|
Hover the mouse pointer over a document title to show the abstract or click
on the title to get all document metadata. |
