| Naslov: | Haplotype-resolved genome assembly of the tetraploid potato cultivar Désirée |
|---|
| Avtorji: | ID Godec, Tim (Avtor)
ID Beier, Sebastian (Avtor)
ID Rodriguez-Granados, Natalia Yaneth (Avtor)
ID Sasidharan, Rashmi (Avtor)
ID Abdelhakim, Lamis (Avtor)
ID Teige, Markus (Avtor)
ID Usadel, Björn (Avtor)
ID Gruden, Kristina (Avtor)
ID Petek, Marko (Avtor) |
|---|
| Datoteke: |  URL - Izvorni URL, za dostop obiščite https://doi.org/10.1101/2025.01.14.631659
 PDF - Predstavitvena datoteka, prenos (1,41 MB)
MD5: AF604B7FC8AFD48ABEAC0C79E285C54C
|
|---|
| Jezik: | Angleški jezik |
|---|
| Tipologija: | 1.25 - Drugi sestavni deli |
|---|
| Organizacija: |  NIB - Nacionalni inštitut za biologijo
|
|---|
| Povzetek: | Cultivar Désirée is an important model for potato functional genomics studies to assist breeding strategies. Here, we present a haplotype-resolved genome assembly of Désirée, achieved by assembling PacBio HiFi reads and Hi-C scaffolding, resulting in a high-contiguity chromosome-level assembly. We implemented a comprehensive annotation pipeline incorporating gene models and functional annotations from the Solanum tuberosum Phureja DM reference genome alongside RNA-seq reads to provide high-quality gene and transcript annotations. Additionally, we provide a genome-wide DNA methylation profile using Oxford Nanopore reads, enabling insights into potato epigenetics. The assembled genome, annotations, methylation and expression data are visualised in a publicly accessible genome browser (https://desiree.nib.si), providing a valuable resource for the potato research community. |
|---|
| Ključne besede: | cultivar Désirée, potato, functional genomics, genome assembly, annotation pipeline, DNA methylation, epigenetics |
|---|
| Status publikacije: | Posredovano založniku |
|---|
| Verzija publikacije: | Nerecenzirani rokopis |
|---|
| Datum objave: | 14.01.2025 |
|---|
| Leto izida: | 2025 |
|---|
| Št. strani: | Str. 1-15 |
|---|
| PID: | 20.500.12556/DiRROS-21370  |
|---|
| UDK: | 575.111 |
|---|
| ISSN pri članku: | Y509-2132 |
|---|
| DOI: | 10.1101/2025.01.14.631659 |
|---|
| COBISS.SI-ID: | 223886083 |
|---|
| Opomba: | Nasl. z nasl. zaslona;
Opis vira z dne 24. 1. 2025;
Soavtorji: Sebastian Beier, Natalia Yaneth Rodriguez-Granados, Rashmi Sasidharan, Lamis Abdelhakim, Markus Teige, Björn Usadel, Kristina Gruden, Marko Petek;
|
|---|
| Datum objave v DiRROS: | 28.01.2025 |
|---|
| Število ogledov: | 790 |
|---|
| Število prenosov: | 414 |
|---|
| Metapodatki: |    |
|---|
|
:
|
Kopiraj citat |
|---|
| | | | Objavi na: |  |
|---|
Postavite miškin kazalec na naslov za izpis povzetka. Klik na naslov izpiše
podrobnosti ali sproži prenos. |
