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Naslov:High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460
Avtorji:ID Matrosova, Vera Y. (Avtor)
ID Gaidamakova, Elena K. (Avtor)
ID Makarova, Kira S. (Avtor)
ID Grichenko, Olga (Avtor)
ID Klimenkova, Polina (Avtor)
ID Volpe, Robert P. (Avtor)
ID Tkavc, Rok (Avtor)
ID Ertem, Gözen (Avtor)
ID Conze, Isabel H. (Avtor)
ID Brambilla, Evelyne (Avtor)
ID Gunde-Cimerman, Nina (Avtor)
ID Grebenc, Tine (Avtor)
ID Gostinčar, Cene (Avtor)
Datoteke:URL URL - Izvorni URL, za dostop obiščite http://dx.doi.org/10.1186/s40793-017-0258-y
 
.pdf PDF - Predstavitvena datoteka, prenos (1,22 MB)
MD5: 78311B6D80EA8A62D020F74599106404
 
Jezik:Angleški jezik
Tipologija:1.01 - Izvirni znanstveni članek
Organizacija:Logo NIB - Nacionalni inštitut za biologijo
Povzetek:The genetic platforms of Deinococcus species remain the only systems in which massive ionizing radiation (IR)-induced genome damage can be investigated in vivo at exposures commensurate with cellular survival. We report the whole genome sequence of the extremely IR-resistant rod-shaped bacterium Deinococcus ficus KS 0460 and its phenotypic characterization. Deinococcus ficus KS 0460 has been studied since 1987, first under the name Deinobacter grandis, then Deinococcus grandis. The D. ficus KS 0460 genome consists of a 4.019 Mbp sequence (69.7% GC content and 3894 predicted genes) divided into six genome partitions, five of which are confirmed to be circular. Circularity was determined manually by mate pair linkage. Approximately 76% of the predicted proteins contained identifiable Pfam domains and 72% were assigned to COGs. Of all D. ficus KS 0460 proteins, 79% and 70% had homologues in Deinococcus radiodurans ATCC BAA-816 and Deinococcus geothermalis DSM 11300, respectively. The most striking differences between D. ficus KS 0460 and D. radiodurans BAA-816 identified by the comparison of the KEGG pathways were as follows: (i) D. ficus lacks nine enzymes of purine degradation present in D. radiodurans, and (ii) D. ficus contains eight enzymes involved in nitrogen metabolism, including nitrate and nitrite reductases, that D. radiodurans lacks. Moreover, genes previously considered to be important to IR resistance are missing in D. ficus KS 0460, namely, for the Mn-transporter nramp, and proteins DdrF, DdrJ and DdrK, all of which are also missing in Deinococcus deserti. Otherwise, D. ficus KS 0460 exemplifies the Deinococcus lineage.
Ključne besede:Deinococcus-Thermus, Deinococcaceae, Deinococcus ficus, radiation-resistant, rod-shaped, phenotype characterization, genome analysis, phylogenetic analysis
Status publikacije:Objavljeno
Verzija publikacije:Objavljena publikacija
Datum objave:28.07.2017
Leto izida:2017
Št. strani:11 str.
Številčenje:Vol. 12
PID:20.500.12556/DiRROS-19816 Novo okno
UDK:630*1
ISSN pri članku:1944-3277
DOI:10.1186/s40793-017-0258-y Novo okno
COBISS.SI-ID:4848806 Novo okno
Opomba:Nasl. iz nasl. zaslona; Skupno št. avtorjev: 38; Opis vira z dne 7. 8. 2017;
Datum objave v DiRROS:25.07.2024
Število ogledov:488
Število prenosov:324
Metapodatki:XML DC-XML DC-RDF
:
MATROSOVA, Vera Y., GAIDAMAKOVA, Elena K., MAKAROVA, Kira S., GRICHENKO, Olga, KLIMENKOVA, Polina, VOLPE, Robert P., TKAVC, Rok, ERTEM, Gözen, CONZE, Isabel H., BRAMBILLA, Evelyne, GUNDE-CIMERMAN, Nina, GREBENC, Tine in GOSTINČAR, Cene, 2017, High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460. Standards in genomic sciences [na spletu]. 2017. Vol. 12. [Dostopano 2 april 2025]. DOI 10.1186/s40793-017-0258-y. Pridobljeno s: https://dirros.openscience.si/IzpisGradiva.php?lang=slv&id=19816
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Gradivo je del revije

Naslov:Standards in genomic sciences
Skrajšan naslov:Stand. genomic sci.
Založnik:Genomic Standards Consortium, Michigan State University
ISSN:1944-3277
COBISS.SI-ID:1843451 Novo okno

Gradivo je financirano iz projekta

Financer:ARIS - Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije
Številka projekta:P4-0107-2015
Naslov:Gozdna biologija, ekologija in tehnologija
Financer:Drugi - Drug financer ali več financerjev
Program financ.:Defense Threat Reduction Agency
Številka projekta:HDTRA-18774
Naslov:Grant
Financer:ARIS - Javna agencija za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije
Številka projekta:BI-US/12-13-003, BI-US/14-15-009
Financer:Drugi - Drug financer ali več financerjev
Program financ.:Office of Science of the U.S. Department of Energy
Številka projekta:DE-AC02-05CH11231

Licence

Licenca:CC BY 4.0, Creative Commons Priznanje avtorstva 4.0 Mednarodna
Povezava:http://creativecommons.org/licenses/by/4.0/deed.sl
Opis:To je standardna licenca Creative Commons, ki daje uporabnikom največ možnosti za nadaljnjo uporabo dela, pri čemer morajo navesti avtorja.

Sekundarni jezik

Jezik:Slovenski jezik
Ključne besede:genomika, radiorezistenca, gama sevanje, deinokokus


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