1. Comparative simulative analysis and design of single-chain self-assembled protein cagesFei Xiao, Longfei Luo, Xin Liu, Ajasja Ljubetič, Nengzhi Jin, Roman Jerala, Guang Hu, 2024, izvirni znanstveni članek Povzetek: Coiled-coil protein origami (CCPO) is a modular strategy for the de novo design of polypeptide nanostructures. It represents a type of modular design based on pairwise-interacting coiled-coil (CC) units with a single-chain protein programmed to fold into a polyhedral cage. However, the mechanisms underlying the self-assembly of the protein tetrahedron are still not fully understood. In the present study, 18 CCPO cages with three different topologies were modeled in silico. Then, molecular dynamics simulations and CC parameters were calculated to characterize the dynamic properties of protein tetrahedral cages at both the local and global levels. Furthermore, a deformed CC unit was redesigned, and the stability of the new cage was significantly improved.
Ključne besede: chemical structure, conformation, genetics oligomers stability
Objavljeno v DiRROS: 03.10.2024; Ogledov: 81; Prenosov: 23
 Celotno besedilo (2,23 MB)
Gradivo ima več datotek! Več... |
2. Unveiling the solution structure of a DNA duplex with continuous silver-modified Watson-Crick base pairsUroš Javornik, Antonio Pérez-Romero, Carmen López-Chamorro, Rachelle M. Smith, José A. Dobado, Oscar Palacios, Mrinal K. Bera, May Nyman, Janez Plavec, Miguel A. Galindo, 2024, izvirni znanstveni članek Objavljeno v DiRROS: 30.09.2024; Ogledov: 95; Prenosov: 598
Celotno besedilo (2,90 MB)
Gradivo ima več datotek! Več... |
3. Learning macroscopic equations of motion from dissipative particle dynamics simulations of fluidsMatevž Jug, Tilen Potisk, Daniel Svenšek, Matej Praprotnik, 2024, izvirni znanstveni članek Ključne besede: sparsity, model selection, particle simulations, macroscopic dynamics, regression
Objavljeno v DiRROS: 26.09.2024; Ogledov: 81; Prenosov: 622
Celotno besedilo (2,13 MB)
Gradivo ima več datotek! Več... |
4. In vitro evolution driven by epistasis reveals alternative cholesterol-specific binding motifs of perfringolysin OAleksandra Šakanović, Nace Kranjc, Neža Omersa, Saša Aden, Andreja Kežar, Matic Kisovec, Apolonija Bedina Zavec, Simon Caserman, Robert J. Gilbert, Marjetka Podobnik, Ana Crnković, Gregor Anderluh, 2024, izvirni znanstveni članek Objavljeno v DiRROS: 12.09.2024; Ogledov: 186; Prenosov: 538
Celotno besedilo (3,73 MB)
Gradivo ima več datotek! Več... |
5. Ultrasound-mediated spatial and temporal control of engineered cells in vivoFilip Ivanovski, Maja Meško, Tina Lebar, Marko Rupnik, Duško Lainšček, Miha Gradišek, Roman Jerala, Mojca Benčina, 2024, izvirni znanstveni članek Objavljeno v DiRROS: 09.09.2024; Ogledov: 202; Prenosov: 3943
Celotno besedilo (1,83 MB)
Gradivo ima več datotek! Več... |
6. Precise design and construction of NiO-Ni heterostructures for active hydrogen evolution photocatalysisKamal Khaja Mohaideen, Rekha Narayan, Selvakannan Periasamy, Sašo Gyergyek, Stefan Popovic, Nejc Hodnik, Hsin-Chia Ho, Petar Djinović, Blaž Likozar, 2024, izvirni znanstveni članek Objavljeno v DiRROS: 09.09.2024; Ogledov: 214; Prenosov: 3902
Celotno besedilo (2,23 MB)
Gradivo ima več datotek! Več... |
7. Lignin structural characterization and its antioxidant potential: a comparative evaluation by EPR, UV-Vis spectroscopy, and DPPH assaysTina Ročnik, Maxim A. Voinov, Miha Grilc, Alex I. Smirnov, Edita Jasiukaityte, Lucian Lucia, Blaž Likozar, 2024, izvirni znanstveni članek Objavljeno v DiRROS: 29.08.2024; Ogledov: 180; Prenosov: 464
Celotno besedilo (1,40 MB)
Gradivo ima več datotek! Več... |
8. |
9. |
10. Role of isotropic lipid phase in the fusion of photosystem II membranesKinga Böde, Uroš Javornik, Ondřej Dlouhý, Ottó Zsiros, Avratanu Biswas, Ildikó Domonkos, Primož Šket, Václav Karlický, Bettina Ughy, Petar H. Lambrev, Vladimír Špunda, Janez Plavec, Győző Garab, 2024, izvirni znanstveni članek Objavljeno v DiRROS: 27.08.2024; Ogledov: 169; Prenosov: 165
Celotno besedilo (1,84 MB)
Gradivo ima več datotek! Več... |
