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Iskalni niz: "ključne besede" (biodiversity) .

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1.
Extreme environments simplify reassembly of communities of arbuscular mycorrhizal fungi
Nataša Šibanc, Dave R. Clark, Thorunn Helgason, Alex J. Dumbrell, Irena Maček, 2024, izvirni znanstveni članek

Povzetek: The ecological impacts of long-term (press) disturbance on mechanisms regulating the relative abundance (i.e., commonness or rarity) and temporal dynamics of species within a community remain largely unknown. This is particularly true for the functionally important arbuscular mycorrhizal (AM) fungi; obligate plant-root endosymbionts that colonize more than two-thirds of terrestrial plant species. Here, we use high-resolution amplicon sequencing to examine how AM fungal communities in a specific extreme ecosystem—mofettes or natural CO2 springs caused by geological CO2 exhalations—are affected by long-term stress. We found that in mofettes, specific and temporally stable communities form as a subset of the local metacommunity. These communities are less diverse and dominated by adapted, “stress tolerant” taxa. Those taxa are rare in control locations and more benign environments worldwide, but show a stable temporal pattern in the extreme sites, consistently dominating the communities in grassland mofettes. This pattern of lower diversity and high dominance of specific taxa has been confirmed as relatively stable over several sampling years and is independently observed across multiple geographic locations (mofettes in different countries). This study implies that the response of soil microbial community composition to long-term stress is relatively predictable, which can also reflect the community response to other anthropogenic stressors (e.g., heavy metal pollution or land use change). Moreover, as AM fungi are functionally differentiated, with different taxa providing different benefits to host plants, changes in community structure in response to long-term environmental change have the potential to impact terrestrial plant communities and their productivity
Ključne besede: arbuscular mycorrhiza, elevated CO2, long-term experiments, soil biodiversity, soil hypoxia, next-generation sequencing, NGS
Objavljeno v DiRROS: 28.02.2024; Ogledov: 90; Prenosov: 46
.pdf Celotno besedilo (1,45 MB)
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How genomics can help biodiversity conservation
Kathrin Theissinger, Tine Grebenc, 2023, izvirni znanstveni članek

Povzetek: The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.
Ključne besede: genomics, biodiversity conservation
Objavljeno v DiRROS: 22.02.2023; Ogledov: 381; Prenosov: 216
.pdf Celotno besedilo (1,52 MB)
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4.
Assessing the heterogeneity and conservation status of the Natura 2000 priority forest habitat type Tilio–Acerion (9180*) based on field mapping
Janez Kermavnar, Erika Kozamernik, Lado Kutnar, 2023, izvirni znanstveni članek

Povzetek: Priority habitat types (HTs) within the Natura 2000 network are of the highest importance for conservation in Europe. However, they often occur in smaller areas and their conservation status is not well understood. One such HT is that of the Tilio–Acerion forests of slopes, screes and ravines (9180*). The Natura 2000 study site, Boč–Haloze–Donačka gora, in the Sub-Pannonian region of eastern Slovenia is characterized by a matrix of European beech forests and includes rather small, fragmented areas covered by Tilio–Acerion forests. The goal of this research was to examine the heterogeneity and conservation status of the selected HT through field mapping, which was performed in the summer of 2020. As the conservation of HT calls for a more detailed approach, we distinguished between the following four pre-defined habitat subtypes: (i) Acer pseudoplatanus-Ulmus glabra stands growing mostly in concave terrain, (ii) Fraxinus excelsior stands growing on slopes, (iii) Tilia sp. stands with thermophilous broadleaves occurring on ridges and slopes, (iv) Acer pseudoplatanus stands occurring on more acidic soils with an admixture of Castanea sativa. Field mapping information was complemented with the assessment of habitat subtype characteristics using remote sensing data. The results showed that habitat subtypes differed significantly in terms of area, tree species composition, forest stand characteristics, relief features and the various threats they experienced (e.g., fragmentation, tree mortality, ungulate browsing pressure). The differences between subtypes were also evident for LiDAR-derived environmental factors related to topography (i.e., terrain steepness and Topographic Position Index). This study provides a baseline for setting more realistic objectives for the conservation management of priority forest HTs. Due to the specificities of each individual habitat subtype, conservation activities should be targeted to the Natura 2000 habitat subtype level.
Ključne besede: forest habitat subtype, monitoring, biodiversity conservation, LiDAR, Slovenia, NATURA 2000
Objavljeno v DiRROS: 03.02.2023; Ogledov: 920; Prenosov: 236
.pdf Celotno besedilo (9,53 MB)
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5.
The status and role of genetic diversity of trees for the conservation and management of riparian ecosystems : a European experts' perspective
Filip Alimpić, Jelena Milovanović, Remigiusz Pielech, Georgi Hinkov, Roland Jansson, Simon Dufour, Marcin Beza, Nebi Bilir, Luis Santos del Blanco, Gregor Božič, 2022, izvirni znanstveni članek

Povzetek: Riparian vegetation supports high biodiversity providing many services and is, therefore, an important landscape element. Riparian ecosystems are subject to numerous pressures leading to population decline and genetic erosion of riparian plants. This may have cascading effects at various ecosystem levels, including decreasing ecosystem services, so identifying the current status of genetic diversity of riparian tree species is vital to improve the effectiveness of restoration efforts. We aimed to elicit expert views on the status and importance of genetic diversity of tree species, and conservation needs across European riparian ecosystems. Sharing of such information among researchers, managers and policymakers has the potential to enhance ecological restoration and management of riparian ecosystems. We identified experts in riparian genetic resources conservation and management across Europe. These included stakeholders with different perspectives, ranging from researchers to practitioners. We designed a set of questionnaires where our identified experts were asked to answer questions related to the status and conservation of genetic diversity of riparian tree species in their respective countries. Specifically, we asked about societal awareness, legislative tools, good practices and conservation or restoration projects accounting for intraspecific genetic diversity and differentiation of tree species in riparian ecosystems. Questionnaire responses were analysed and discussed in light of the scientific literature to define needs and priorities related to the management and conservation of genetic diversity of riparian tree species. The experts recognized that a combination of in situ and ex situ measures and/or integrative conservation of riparian ecosystems is the most appropriate option for conserving the genetic diversity of riparian tree species. Simultaneous application of conservation measures at the level of priority species, identified by experts, and protection of riparian areas are required. Synthesis and applications. This study revealed the importance of recognizing the ecological processes that shape the genetic diversity of riparian tree species in hydrographic networks (dendritic spatial configuration, specific patterns of gene flow among riparian populations, fragmentation of river by dams) but also the need to overcome socio-economic barriers, such as lack of policy priority, deficiency in funding and weak legislation framework.
Ključne besede: biodiversity conservation, genetic erosion, genetic resources conservation, knowledge transfer, management, riparian genetic diversity, vegetation
Objavljeno v DiRROS: 08.12.2022; Ogledov: 414; Prenosov: 281
.pdf Celotno besedilo (1,02 MB)
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6.
Plants play a crucial role in the development of soil fungal communities in the remediated substrate after EDTA washing of metal-contaminated soils
Irena Maček, Sara Pintarič, Nataša Šibanc, Tatjana Rajniš, Damjana Kastelec, Domen Leštan, Marjetka Suhadolc, 2022, izvirni znanstveni članek

Povzetek: In this study, we investigated the importance of plant cover for secondary succession and soil fungal community development in remediated substrates after EDTA washing of metal-contaminated soils. The abundance of the total fungal community, determined by ITS fungal marker genes (Internal Transcribed Spacer region), and root colonisation by arbuscular mycorrhizal (AM) fungi were monitored in two types of soil material (calcareous and acidic) sown with perennial ryegrass (Lolium perenne L.) and without plant cover (bulk soil). Four months after the start of the experiment, the abundance of ITS genes in the soil clearly showed that the presence of plants was the main factor affecting the total fungal community, which increased in the rhizosphere soil in most treatments, while it remained at a low level in the bulk soil (without plants). Interestingly, the addition of environmental inoculum, i.e., rhizosphere soil from a semi-natural meadow, did not have a positive effect on the abundance of the total fungal community. While fungal ITS genes were detected in soils at the end of the first growing season, arbuscular mycorrhizal (AM) structures were scarce in Lolium roots in all treatments throughout the first season. However, in the second season, more than a year after the start of the experiment, AM fungal colonisation was detected in Lolium roots in virtually all treatments, with the frequency of colonised root length ranging from 30% to >75% in some treatments, the latter also in remediated soil. This study demonstrates the importance of plants and rhizosphere in the development and secondary succession of fungal communities in soil, which has important implications for the revitalisation of remediated soils and regenerative agriculture.
Ključne besede: heavy metals, arbuscular mycorrhiza, remediation, revitalisation, secondary succession, biodiversity, qPCR, toxic metals pollution
Objavljeno v DiRROS: 19.09.2022; Ogledov: 600; Prenosov: 239
.pdf Celotno besedilo (1,18 MB)
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7.
Distribution and phylogeography of the genus Mattirolomyces with a focus on the Asian M. terfezioides haplotypes
J. Wei, Tine Grebenc, Xuan Zhang, SiMin Xiang, Yongjun Fan, 2022, izvirni znanstveni članek

Povzetek: Mattirolomyces is an edible commercial sequestrate genus that is globally distributed. From the five described taxa of this genus, Mattirolomyces terfezioides is the most common species in Asia. Our recent attempts to locate M. terfezioides outside its current distribution area in China documented its first records in areas of poplar trees with the lowest known temperature and precipitation averages ever recorded for this species. This peculiar ecology was not reflected on the species-morphological features nor on its phylogenetic position in the genus. The first attempt to apply the phylogenetic network approach to Mattirolomyces revealed its geographic origin in the Asian-Pacific areas prior to frequent long-distance migration events. Based on data from recent study areas, we found that the collections from Inner Mongolia and the Shanxi province were similar to European collections. Asian haplotypes were less distant from the outgroup comparing to collections from Europe, supporting the hypothesis that M. terfezioides was originated from this Chinese area and was subsequently transported to Europe. Exploring M. terfezioides ecology and its mycorrhiza potential to grow in association with poplars would be of great importance for planning cultivation projects of this valuable desert truffle species in Central and Eastern China, a currently underexploited economic sector that deserves further ecological and M. terfezioides mycorrhizal synthesis investigations.
Ključne besede: biodiversity, biogeography, mycology, Mattirolomyces terfezioides, Desert truffle, Inner Mongolia, phylogeography
Objavljeno v DiRROS: 05.08.2022; Ogledov: 536; Prenosov: 355
.pdf Celotno besedilo (11,81 MB)
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8.
The era of reference genomes in conservation genomics
Giulio Formenti, 2022, izvirni znanstveni članek

Povzetek: Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.
Ključne besede: conservation genetics, biodiversity conservation, European Reference Genome Atlas, ERGA
Objavljeno v DiRROS: 03.02.2022; Ogledov: 689; Prenosov: 502
.pdf Celotno besedilo (519,06 KB)
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9.
Global homogenization of the structure and function in the soil microbiome of urban greenspaces
Manuel Delgado-Baquerizo, David J. Eldridge, Yu-Rong Liu, Blessing Sokoya, Jun-Tao Wang, Hang-Wei Hu, Ji-Zheng He, Felipe Bastida, José L. Moreno, Adebola R. Bamigboye, Tine Grebenc, Tina Unuk Nahberger, 2021, izvirni znanstveni članek

Povzetek: The structure and function of the soil microbiome of urban greenspaces remain largely undetermined. We conducted a global field survey in urban greenspaces and neighboring natural ecosystems across 56 cities from six continents, and found that urban soils are important hotspots for soil bacterial, protist and functional gene diversity, but support highly homogenized microbial communities worldwide. Urban greenspaces had a greater proportion of fast-growing bacteria, algae, amoebae, and fungal pathogens, but a lower proportion of ectomycorrhizal fungi than natural ecosystems. These urban ecosystems also showed higher proportions of genes associated with human pathogens, greenhouse gas emissions, faster nutrient cycling, and more intense abiotic stress than natural environments. City affluence, management practices, and climate were fundamental drivers of urban soil communities. Our work paves the way toward a more comprehensive global-scale perspective on urban greenspaces, which is integral to managing the health of these ecosystems and the well-being of human populations.
Ključne besede: soil biodiversity, structural diversity, functional diversity, urban soils
Objavljeno v DiRROS: 15.07.2021; Ogledov: 947; Prenosov: 790
.pdf Celotno besedilo (4,34 MB)
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10.
The lichens of the Ždrocle forest reserve
Johannes Prügger, Boštjan Surina, Helmut Mayrhofer, 2000, izvirni znanstveni članek

Povzetek: 88 lichenized and 2 lichenicolous fungi are reported from the @drocle Forest Reserve. The association Ranunculo platanifolii-Fagetum var. geogr. Calaminthagrandiflora hosts the greatest biodiversity of lichens. One species (Biatora flavopunctata) is new for the flora of Slovenia, two species (Collemafurfuraceum and Lecanora subintricata) and one variety (Cladonia macilenta ssp. floerkeana) are new for the dinaric phytogeographical region.
Ključne besede: flora, lichens, lichenicolus fungi, distribution, biodiversity, forest reserve
Objavljeno v DiRROS: 17.11.2020; Ogledov: 1218; Prenosov: 389
.pdf Celotno besedilo (1,14 MB)

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