1. The importance of population contextual data for large-scale biomonitoring using an apex predator : the Tawny Owl (Strix aluco)Urška Ratajc, Rui Lourenço, Silvia Espín, Pablo Sánchez Virosta, Simon Birrer, Dani Studler, Chris Wernham, Al Vrezec, 2023, pregledni znanstveni članek Povzetek: Top predators are often used as sentinel species in contaminant monitoring due to their exposure and vulnerability to persistent, bioaccumulative and, in some cases, biomagnificable contaminants. Some of their ecological traits can vary in space and time, and are known to influence the contamination levels and therefore information on ecological traits should be used as contextual data for correct interpretation of large-scale contaminant spatial patterns. These traits can explain spatiotemporal variation in contaminant exposure (traits such as diet and dispersal distances) or contaminant impacts (traits such as population trend and clutch size). The aim of our research was to review the spatial variation in selected contextual parameters in the Tawny Owl (Strix aluco), a species identified by the COST Action European Raptor Biomonitoring Facility as one of the most suitable candidates for pan-European biomonitoring. A considerable variation in availability of published and unpublished contextual data across Europe was found, with diet being the most extensively studied trait. We demonstrate that the Tawny Owl is a suitable biomonitor at local scale but also that taking spatial variation of other contextual data (e.g. diet) into account is necessary. We found spatial gaps in knowledge about the species ecology and biology in Southern Europe, along with gaps in certain population parameters (e.g. population trends) in several countries. Based on our findings, we proposed a minimal recommended scheme for monitoring of population contextual data as one of the first steps towards a pan-European monitoring scheme using the Tawny Owl.
Ključne besede: raptors, sentinel species, contamination exposure, contamination impact, diet, minimal recommended monitoring scheme
Objavljeno v DiRROS: 05.08.2024; Ogledov: 192; Prenosov: 157
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2. COVID-19 pandemic consequences on coastal water quality using WST Sentinel-3 Data : case of Tangier, MoroccoEl Khalil Cherif, Martin Vodopivec, Nezha Mejjad, Joaquim C.G Esteves da Silva, Simona Simonovič, Hakim Boulaassal, 2020, izvirni znanstveni članek Povzetek: The west coast of Tangier, in northern Morocco, has been affected by industrial wastewater discharge that reaches the ocean through the Boukhalef river. Therefore, the Jbila and Sidikacem beaches near to the Boukhalef river mouth have been classified as polluted for many years. With the aim of determining the COVID-19 pandemic consequences on the Tangier coastal environment, a linear model using Sentinel 3 water surface temperature (WST) has been tested in several locations. Data from April 2019 and April 2020, before and during the COVID-19 pandemic related emergency status in Morocco, were compared. The results from April 2019 showed high WST values and consequently, the poorest water quality in the sites closest to the Boukhalef river mouth. On the other hand, the results from April 2020 showed normal WST values and high water quality in the same study area. These results illustrate the usefulness of Sentinel 3 WST for the estimation of bathing water quality on the west coast of Tangier. The study shows the positive impact of the COVID-19 pandemic consequences on the coastal environment quality in the study area and indicates the importance of decreasing the industrial discharge on the west coast of Tangier. The same methodology could be used in decision-making processes and to reduce cost, time and human resources for coastal monitoring systems. We demonstrate the potential of using the Sentinel 3 data for coastal waters monitoring, as well as the need for stricter controls of pollutant discharges into the world’s rivers.
Ključne besede: COVID-19, Sentinel 3, WST, Tangier west coast, coastal waters, bathing waters, industrial activities
Objavljeno v DiRROS: 22.07.2024; Ogledov: 203; Prenosov: 157
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3. Comparison of in-situ chlorophyll-a time series and sentinel-3 ocean and land color instrument data in Slovenian national waters (Gulf of Trieste, Adriatic Sea)El Khalil Cherif, Patricija Mozetič, Janja Francé, Vesna Flander-Putrle, Jana Faganeli Pucer, Martin Vodopivec, 2021, izvirni znanstveni članek Povzetek: While satellite remote sensing of ocean color is a viable tool for estimating large-scale patterns of chlorophyll-a (Chl-a) and global ocean primary production, its application in coastal waters is limited by the complex optical properties. An exploratory study was conducted in the Gulf of Trieste (Adriatic Sea) to assess the usefulness of Sentinel-3 satellite data in the Slovenian national waters. OLCI (Ocean and Land Colour Instrument) Chl-a level 2 products (OC4Me and NN) were compared to monthly Chl-a in-situ measurements at fixed sites from 2017 to 2019. In addition, eight other methods for estimating Chl-a concentration based on reflectance in different spectral bands were tested (OC3M, OC4E, MedOC4, ADOC4, AD4, 3B-OLCI, 2B-OLCI and G2B). For some of these methods, calibration was performed on in-situ data to achieve a better agreement. Finally, L1-regularized regression and random forest were trained on the available dataset to test the capabilities of the machine learning approach. The results show rather poor performance of the two originally available products. The same is true for the other eight methods and the fits to the measured values also show only marginal improvement. The best results are obtained with the blue-green methods (OC3, OC4 and AD4), especially the AD4SI (a designated fit of AD4) with R = 0.56 and RMSE = 0.4 mg/m³, while the near infrared (NIR) methods show underwhelming performance. The machine learning approach can only explain 30% of the variability and the RMSE is of the same order as for the blue-green methods. We conclude that due to the low Chl-a concentration and the moderate turbidity of the seawater, the reflectance provided by the Sentinel-3 OLCI spectrometer carries little information about Chl-a in the Slovenian national waters within the Gulf of Trieste and is therefore of limited use for our purposes. This requires that we continue to improve satellite products for use in those marine waters that have not yet proven suitable. In this way, satellite data could be effectively integrated into a comprehensive network that would allow a reliable assessment of ecological status, taking into account environmental regulations.
Ključne besede: hydrobiology, coastal waters, Gulf of Trieste, chlorophyll-a, Sentinel-3, OLCI, machine learning
Objavljeno v DiRROS: 19.07.2024; Ogledov: 200; Prenosov: 624
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4. Completely resected stage III melanoma controversy : 15 years of national tertiary centre experienceBarbara Perić, Sara Milićević, Andraž Perhavec, Marko Hočevar, Janez Žgajnar, 2021, izvirni znanstveni članek Povzetek: Background Two prospective randomized studies analysing cutaneous melanoma (CM) patients with sentinel lymph node (SLN) metastases and rapid development of systemic adjuvant therapy have changed our approach to stage III CM treatment. The aim of this study was to compare results of retrospective survival analysis of stage III CM patients% treatment from Slovenian national CM register to leading international clinical guidelines. Patients and methods Since 2000, all Slovenian CM patients with primary tumour % TIb are treated at the Institute of Oncology Ljubljana and data are prospectively collected into a national CM registry. A retrospective analysis of 2426 sentinel lymph node (SLN) biopsies and 789 lymphadenectomies performed until 2015 was conducted using Kaplan-Meier survival curves and log-rank tests. Results Positive SLN was found in 519/2426 (21.4%) of patients and completion dissection (CLND) was performed in 455 patients. The 5-year overall survival (OS) of CLND group was 58% vs. 47% of metachronous metastases group (MLNM) (p = 0.003). The 5-year OS of patients with lymph node (LN) metastases and unknown primary site (UPM) was 45% vs. 21% of patients with synchronous LN metastasis. Patients with SLN tumour burden < 0.3 mm had 5-year OS similar to SLN negative patients (86% vs. 85%; p = 0.926). The 5-year OS of patients with burden > 1.0 mm was similar to the MLNM group (49% vs. 47%; p = 0.280). Conclusions Stage III melanoma patients is a heterogeneous group with significant OS differences. CLND after positive SLNB might still remain a method of treatment for selected patients with stage III.
Ključne besede: cutaneous melanoma, surgery treatment, sentinel node biopsy
Objavljeno v DiRROS: 17.07.2024; Ogledov: 218; Prenosov: 101
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5. Evaluating seagrass meadow dynamics by integrating field-based and remote sensing techniquesDanijel Ivajnšič, Martina Orlando-Bonaca, Daša Donša, Jaša Veno Grujić, Domen Trkov, Borut Mavrič, Lovrenc Lipej, 2022, izvirni znanstveni članek Povzetek: Marine phanerogams are considered biological sentinels or indicators since any modification in seagrass meadow distribution and coverage signals negative changes in the marine environment. In recent decades, seagrass meadows have undergone global losses at accelerating rates, and almost one-third of their coverage has disappeared globally. This study focused on the dynamics of seagrass meadows in the northern Adriatic Sea, which is one of the most anthropogenically affected areas in the Mediterranean Sea. Seagrass distribution data and remote sensing products were utilized to identify the stable and dynamic parts of the seagrass ecosystem. Different seagrass species could not be distinguished with the Sentinel-2 (BOA) satellite image. However, results revealed a generally stable seagrass meadow (283.5 Ha) but, on the other hand, a stochastic behavior in seagrass meadow retraction (90.8 Ha) linked to local environmental processes associated with anthropogenic activities or climate change. If systemized, this proposed approach to monitoring seagrass meadow dynamics could be developed as a spatial decision support system for the entire Mediterranean basin. Such a tool could serve as a key element for decision makers in marine protected areas and would potentially support more effective conservation and management actions in these highly productive and important environments.
Ključne besede: Adriatic Sea, seagrass meadow, change analysis, Cimodocea nodosa, image classifiers, Sentinel-2, marine biology, hydrobiology
Objavljeno v DiRROS: 16.07.2024; Ogledov: 200; Prenosov: 161
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6. Modern treatment of vulvar cancerSebastjan Merlo, 2020, pregledni znanstveni članek Povzetek: Vulvar cancer accounts for 3%5% of malignant diseases of the female genital tract. The Slovenian incidence rate is 5.5/100,000, which means 57 new cases per year. The most common histological type (90%) is squamous cell carcinoma. Based on etiology, it can be classified into the first type which correlates with human papillomavirus (HPV) infection and the second type which is not associated with HPV. The most common and long-lasting symptom of vulvar cancer is pruritus. The preferred diagnostic procedure to confirm the diagnosis is a punch or incision biopsy. Surgery in combination with radiotherapy is the standard treatment for vulvar cancer. Sentinel lymph node biopsy with lymphoscintigraphy is now a standard part of surgical treatment. Chemotherapy is a palliative treatment option. Conclusions. Vulvar cancer is a rare disease. Because of the pathogenesis, surgery and radiotherapy are the main treatment modalities. The sentinel node biopsy (SNB) represents a contemporary approach to the vulvar cancer treatment and significantly reduces morbidity. Improvements in treatment of vulvar cancer contributed to the decrease of mortality among Slovenian women.
Ključne besede: vulvar cancer, surgical treatment, sentinel lymph node biopsy, lymphoscintigraphy
Objavljeno v DiRROS: 16.07.2024; Ogledov: 202; Prenosov: 49
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7. Towards the development of a landslide activity map in SloveniaMateja Jemec Auflič, Krištof Oštir, Tanja Grabrijan, Matjaž Ivačič, Tina Peternel, Ela Šegina, 2024, izvirni znanstveni članek Povzetek: To create the landslide activity map, we implemented and tested the procedure to fully utilise the 6-day repeatability of the Sentinel-1 constellation in three pilot areas in Slovenia for the observation period from 2017 to 2021. The interferometric processing of the Sentinel-1 images was carried out with ENVI SARScape, while the interpretation of the persistent scatterers InSAR data was done in three steps. In the first step, a preliminary interpretation of the landslide areas was performed by integrating the PS InSAR data into a GIS environment with information that could be relevant to explain the movement patterns of the PS InSAR points. In the second step, a field validation was performed to check the PS InSAR in the field and record the potential damage to the objects indicating the slope mass movements. In the third step, the deformations were identified, and areas of significant movement were determined, consisting of clusters of at least 3 persistent scatterers (PS) with a maximum spacing of 10 m. The landslide activity map was created based on the landslide areas categorised into four classes based on the geotechnical analyses, yearly velocity data obtained by PS InSAR, and validation of annual velocity data obtained by in-situ and GNSS monitoring and field observation. A total of 21 polygons with different landslide activities were identified in three study areas. The overall methodology will help stakeholders in the early mapping and monitoring of landslides to increase the urban resilience.
Ključne besede: landslides, EO data, sentinel, time series, methodology, Slovenia
Objavljeno v DiRROS: 30.04.2024; Ogledov: 380; Prenosov: 240
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8. Land surface phenology from satellite data : technical reportUrška Kanjir, Ana Potočnik Buhvald, Mitja Skudnik, Liza Stančič, Krištof Oštir, 2022, elaborat, predštudija, študija Ključne besede: phenology, forest, remote sensing, MODIS, Sentinel-2, vegetation indices
Objavljeno v DiRROS: 29.12.2022; Ogledov: 709; Prenosov: 243
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9. Razlike v fenološkem razvoju prevladujočih drevesnih vrst na Pahernikovi gozdni posesti ocenjene z analizo satelitskih posnetkovAnže Martin Pintar, David Hladnik, 2019, izvirni znanstveni članek Povzetek: Fenološke razlike prevladujočih drevesnih vrst na območju Pahernikove posesti smo ocenjevali na podlagi satelitskih posnetkov misije Sentinel-2. Analizirali smo normirane diferencialne vegetacijske indekse (NDVI) v obdobju od 29. marca do 15. oktobra 2017. Na podlagi razlik v vegetacijskem indeksu NDVI je mogoče ocenjevati fenološki razvoj prevladujočih drevesnih vrst bukve (Fagus sylvatica L.), smreke (Picea abies L. (Karsten)) in macesna (Larix decidua Mill.) v gozdnih sestojih. Na območju posesti ugotavljamo omejitve ocenjevanja fenološkega razvoja smreke v mešanih sestojih smreke in jelke (Abies alba Mill.), ki imajo podobne vrednosti NDVI. Pri bukvi pa smo ugotovili manjšanje vrednosti NDVI na posnetkih 21. aprila in 5. oktobra z višanjem nadmorske višine, kar povezujemo s poznejšim olistanjem in hitrejšim rumenenjem listov bukve na višjih nadmorskih višinah.
Ključne besede: raznodobni gozdovi, bukev, Fagus sylvatica L., smreka, Picea abies L. (Karsten), gradient nadmorske višine, Sentinel-2, NDVI, kompozitna slika, Dravsko Pohorje
Objavljeno v DiRROS: 19.10.2019; Ogledov: 3213; Prenosov: 896
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10. Forewarned is forearmed : harmonized approaches for early detection of potentially invasive pests and pathogens in sentinel plantingsCarmen Morales-Rodríguez, Sten Anslan, Marie-Anne Auger-Rozenberg, Sylvie Augustin, Yuri Baranchikov, Amani Bellahirech, Daiva Burokiene, Dovile Čepukoit, Ejup Çota, Kateryna Davydenko, Maarten De Groot, 2019, izvirni znanstveni članek Povzetek: The number of invasive alien pest and pathogen species affecting ecosystem functioning, human health and economies has increased dramatically over the last decades. Discoveries of invasive pests and pathogens previously unknown to science or with unknown host associations yet damaging on novel hosts highlights the necessity of developing novel tools to predict their appearance in hitherto naïve environments. The use of sentinel plant systems is a promising tool to improve the detection of pests and pathogens before introduction and to provide valuable information for the development of preventative measures to minimize economic or environmental impacts. Though sentinel plantings have been established and studied during the last decade, there still remains a great need for guidance on which tools and protocols to put into practice in order to make assessments accurate and reliable. The sampling and diagnostic protocols chosen should enable as much information as possible about potential damaging agents and species identification. Consistency and comparison of results are based on the adoption of common procedures for sampling design and sample processing. In this paper, we suggest harmonized procedures that should be used in sentinel planting surveys for effective sampling and identification of potential pests and pathogens. We also review the benefits and limitations of various diagnostic methods for early detection in sentinel systems, and the feasibility of the results obtained supporting National Plant Protection Organizations in pest and commodity risk analysis.
Ključne besede: alien invasive pests, alien invasive pathogens, commodity risk analysis, early warning, sampling techniques, sentinel plants, pest risk analysis, prediction
Objavljeno v DiRROS: 01.07.2019; Ogledov: 2591; Prenosov: 1546
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