1. A novel digital PCR assay for detection and comprehensive characterization of Molluscum contagiosum virus genotypes MOCV1, MOCV2, and MOCV3 and recombinant lineagesTomaž Mark Zorec, Lucijan Skubic, Mario Poljak, 2024, izvirni znanstveni članek Povzetek: Molluscum contagiosum virus (MOCV) is an important human pathogen causing a high disease burden worldwide. It is the last exclusively human-infecting poxvirus still circulating in its natural reservoir-a valuable model of poxviral evolution. Unfortunately, MOCV remains neglected, and little is known about its evolutionary history and circulating genomic variants, especially in non-privileged countries. The design weaknesses of available MOCV detection/genotyping assays surfaced with recent accumulation of abundant sequence information: all existing MOCV assays fail at accurate genotyping and capturing sub-genotype level diversity. Because complete MOCV genome characterization is an expensive and labor-intensive task, it makes sense to prioritize samples for whole-genome sequencing by diversity triage screening. To meet this demand, we developed a novel assay for accurate MOCV detection and genotyping, and comprehensive sub-genotype qualification to the level of phylogenetic groups (PGs). The assay included a novel set of oligonucleotide primers and probes, and it was implemented using digital polymerase chain reaction (dPCR). It offers sensitive, specific, and accurate detection, genotyping (MOCV1-MOCV3), and PG qualification (PG1-6) of MOCV DNA from clinical samples. The novel dPCR assay is suitable for MOCV diversity triage screening and prioritization of samples for complete MOCV genome characterization. Ključne besede: Molluscum contagiosum, Molluscum contagiosum virus, digital PCR, diversity screening, molecular diagnostics, sample prioritization triage Objavljeno v DiRROS: 12.06.2026; Ogledov: 83; Prenosov: 59
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2. Allplex HPV HR detection assay fulfils all clinical performance and reproducibility validation requirements for primary cervical cancer screeningAnja Oštrbenk Valenčak, Kate S. Cuschieri, Linzi Connor, Andrej Zore, Špela Smrkolj, Mario Poljak, 2024, izvirni znanstveni članek Povzetek: Human papillomavirus (HPV)-based screening offers better protection against cervical cancer compared to cytology, but HPV screening assays must adhere to validation requirements of the international guidelines to ensure optimal performance. Allplex HPV HR Detection (Allplex) assay, launched in the late 2022, is a fully automated real-time PCR-based assay utilizing innovative technology that enables quantification and concurrent distinction of 14 high-risk HPV genotypes (HPV16,18,31,33,35,39,45,51,52,56,58,59,66 and 68). We assessed the validity of the Allplex for cervical cancer screening purposes, via comparison to a clinically validated comparator assay (Hybrid Capture 2; HC2), and through assessment of intra-laboratory reproducibility and inter-laboratory agreement. A clinical validation panel comprised of 973 residual ThinPrep samples was obtained from women aged 30-64 years participating in the organized Slovenian screening program, of these 863 were from women undergoing their regular screening visit after a previous negative screen test while 110 were from women with underlying cervical intraepithelial neoplasia grade 2 or worse (CIN2+) lesions. The Allplex's relative clinical sensitivity for detection of CIN2+ and CIN3+ were 1.01 (95%CI;0.98-1.04) and 0.98 (95%CI;0.95-1.02), compared to that of HC2. At recommended thresholds of ≥98% and ≥90%, the Allplex's clinical sensitivity and specificity (p=0.0004 and p=0.02, respectively) were non-inferior to HC2. High intra-laboratory reproducibility and inter-laboratory agreement, both overall (98.1% and 97.9%, respectively) and at genotype level (>98.7%) was observed. In addition, analytical genotype-specific performance of Allplex was compared to that of its predecessor Anyplex HPV HR; high overall agreement was observed (96.3%; kappa value 0.88), with some variations in performance. In conclusion, Allplex met all validation criteria described in the international guidelines on sensitivity, specificity and laboratory reproducibility and can be considered clinically validated for primary cervical cancer screening. Ključne besede: Allplex HPV HR, HPV, cervical cancer, genotyping, human papillomaviruses, screening, validation Objavljeno v DiRROS: 11.06.2026; Ogledov: 108; Prenosov: 73
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4. Parallel screening strategies reveal distinct phenotypic and genotypic profiles of familial hypercholesterolemia in children and adultsJaka Šikonja, Urška Intihar, Borut Jug, Neža Salobir, Katarina Trebušak Podkrajšek, Matija Cevc, Nina Đorđević, Jan Kafol, Tevž Gorjanc, Matej Mlinarič, Barbara Čugalj Kern, Jernej Kovač, Tadej Battelino, Zlatko Fras, Urh Grošelj, 2026, izvirni znanstveni članek Povzetek: Background: Multiple familial hypercholesterolemia (FH) screening strategies are recommended, but how they work together within a population remains poorly understood. Here, we aimed to compare the characteristics of children diagnosed through a universal screening program with those of adults identified through opportunistic screening. Methods: In this retrospective cross-sectional study, we analyzed the clinical and genetic characteristics of children and adults with genetically confirmed heterozygous FH (HeFH). Results: Out of 442 children and 299 adults with a definite or probable FH based on clinical criteria, 39 (13.0%) adults and 197 (44.6%) children had also a genetic HeFH. FH causative variants were present in low-density lipoprotein receptor (LDLR) in 159 (67.4%) patients and in apolipoprotein B (APOB) in 77 (32.6%) patients. The combined screening approach identified 44 disease-causing variants, of which 2 and 25 were unique to the adult and pediatric cohort, respectively. The proportion of children with missense variants was significantly higher (172 [87.3%] vs. 27 [69.2%]; p = 0.005), whereas the proportion of termination variants was significantly lower (20 [10.2%] vs. 11 [28.2%]; p = 0.002) compared to the adult group. Adults had higher adjusted low-density lipoprotein cholesterol compared to children. Conclusions: Our study suggests that opportunistic adult screening identifies more severe FH phenotypes, while universal pediatric screening detects milder cases. Ključne besede: familial hypercholesterolemia, adults, children, genetics, universal screening, opportunistic screening Objavljeno v DiRROS: 01.06.2026; Ogledov: 134; Prenosov: 89
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5. Prevalence of high-risk human papillomaviruses (HPV) in Slovenian women attending organized National Cervical Cancer Screening 14 years after implementation of the National HPV Vaccination ProgramMateja Lasič Pecev, Anja Oštrbenk Valenčak, Špela Smrkolj, Klara Bohinc, Ana Pflaum, Mario Poljak, 2025, izvirni znanstveni članek Povzetek: Background/Objectives: To assess overall and type-specific HPV vaccine effectiveness in central and eastern Europe (CEE), the age-stratified prevalence of cervical HPV infection was determined among Slovenian women aged 20 to 64 attending a cervical cancer screening program 14 years after implementation of a national HPV vaccination program, which was then compared with 2009-2010 pre-vaccination data using the same methodological approach. Methods: Cervical samples of 4419 women were tested in 2023-2025 using the clinically validated Alinity m HR HPV Assay, and individual HPV types were determined by the Allplex HPV HR Detection assay. Results were compared with 2009-2010 pre-vaccination data generated using the same assay on an age-range matched cohort of women. Results: The overall prevalence of the 14 Alinity-targeted HPV types was 10.0% in 2023-2025 versus 13.3% in 2009-2010 (p < 0.001). HPV16 prevalence declined from 3.5% to 1.5% (p < 0.001), and HPV18 prevalence from 1.1% to 0.5% (p = 0.005). In women aged 20 to 24 with 40% uptake of quadrivalent HPV vaccine, overall HPV prevalence dropped from 25.3% to 12.8% (p < 0.001). No single case of HPV16/HPV18 infection was detected among vaccinated women. Conclusions: The first large-scale, systematic, and methodologically consistent study of HPV vaccine effectiveness in CEE showed a substantial reduction in high-risk HPV prevalence after implementation of the national program, with the greatest decline among women aged 20 to 24, who harbored the highest HPV burden in the pre-vaccination era. These locally acquired data will considerably inform public health strategies on cervical cancer elimination in CEE. Ključne besede: HPV, Slovenia, central ane eastern Europe, cervical cancer, prevalence, screening, vaccination Objavljeno v DiRROS: 20.04.2026; Ogledov: 205; Prenosov: 133
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6. Diagnostic approach to children with unexplained global developmental delay in pediatric neurology outpatient clinicAirin Veronese, Damjan Osredkar, Luca Lovrečić, Anja Troha Gergeli, 2025, izvirni znanstveni članek Povzetek: Background Global developmental delay (GDD) is a common pediatric disorder that affects up to 3% of children. Due to the heterogeneous etiology of GDD, diagnostic procedures and algorithms are complex and diverse. The aim of our study was to investigate the diagnostic yield of genetic, metabolic, and imaging studies in establishing the etiology of unexplained GDD (UGDD). Methods In this retrospectively observational study, we examined the medical records of all children diagnosed with UGDD at the Department of Pediatric Neurology, University Medical Centre Ljubljana, Slovenia, between January and December 2019. We evaluated the effectiveness of various genetic, metabolic, and magnetic resonance imaging (MRI) tests in identifying the underlying cause of GDD. Additionally, we assessed subgroups of patients to determine whether any of the studied tests were particularly beneficial based on their clinical symptoms. Results A total of 123 patients met the inclusion criteria, with a median age of 4.3 years (range, 0–16 years), of which 71 (57.7%) were males. Genetic diagnosis was established in 47.1% (58/123) of patients. Metabolic laboratory testing did not identify a metabolic disease in any of the tested participants (114/123) and MRI was critical for diagnosis in only 1/81 (1.2%) patient. Conclusion Our findings strongly suggest that genetic testing surpasses MRI and metabolic testing in establishing the etiology of UGDD in a pediatric neurology outpatient setting. This information will help guide the diagnostic evaluation of these children Ključne besede: unexplained global developmental delay, diagnostic yield, genetics, MRI, metabolic screening Objavljeno v DiRROS: 16.04.2026; Ogledov: 234; Prenosov: 194
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7. Cascade screening of a Pakistani consanguineous familial hypercholesterolemia cohort : identification of seven new homozygous patientsQuratul Ain, Jaka Šikonja, Fouzia Sadiq, Saeed Shafi, Jan Kafol, Tevž Gorjanc, Urša Šuštar, Jernej Kovač, Iqbal Mohammad Khan, Muhammad Ajmal, Urh Grošelj, 2025, izvirni znanstveni članek Povzetek: Background and aims: Familial hypercholesterolemia (FH) is a genetic disorder characterized by elevated low-density lipoprotein cholesterol (LDL-C) levels from birth, significantly increasing the risk of premature cardiac events and mortality. In Pakistan, despite the potential burden of FH, comprehensive studies evaluating its genetic characteristics, cascade screening significance, and lipoprotein (a) [Lp(a)] levels remain scarce. Understanding these factors is crucial for effective diagnosis, risk assessment, and management of FH in the Pakistani population. Methods: After the identification of index case with clinical homozygous FH, characterized by high LDL-C and high Lp(a) levels together with a positive personal and family history of cardiovascular disease, a cascade screening of 66 relatives from a consanguineous family was performed. Blood samples were obtained from all subjects for biochemical and genetic analysis. Simon Broome criteria was applied on children for clinical FH diagnosis. Dutch Lipid Clinic Network scores were calculated for individuals aged ≥16years. Genetic screening was performed using next-generation sequencing to analyse all coding regions and exon-intron borders of the following genes: ALMS1, APOA1, APOB, APOA5, APOC2, APOC3, APOE, ABCA1, ABCG5, ABCG8, CREB3L3, GPIHBP1, LDLR, LDLRAP1, LIPA, LMF1, LPL, and PCSK9. The identified variants were confirmed using Sanger sequencing. Results: Cascade screening identified seven homozygous and 25 heterozygous FH patients with pathogenic variant in the LDLR gene (NM_000527.5: c.2416dupG: p. Val806GlyfsTer11). Additionally, heterozygous variants of uncertain significance were identified in 4 other subjects. Conclusion: This study underscores the high effectiveness of cascade screening in consanguineous families and societies that could lead to early detection and prevention. Ključne besede: cardiovascular disease, cascade screening, consanguineous, familial hypercholesterolemia, homozygous Objavljeno v DiRROS: 09.04.2026; Ogledov: 200; Prenosov: 184
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8. Ten years of experience with screening for diabetes in pregnancy according to IADPSG criteria in SloveniaLili Steblovnik, Renata Košir-Pogačnik, Mateja Sladič, 2026, pregledni znanstveni članek Povzetek: This review presents analysis of gestational diabetes mellitus (GDM) in Slovenia based on national data and published research over a decade. Slovenia adopted the International Association of Diabetes and Pregnancy Study Groups (IADPSG) recommendations in 2011 and integrated them into routine antenatal care by 2023. Universal screening has increased the prevalence of GDM from 4 % before 2010 to 21 % in 2023. The analysed perinatal outcomes improved: the overall rates of large for gestational age (LGA) neonates and Erb’s palsy decreased (AOR 0.93, 95 % CI 0.91–0.96 and AOR 0.72, 95 % CI 0.60–0.86 respectively) as did rates of preeclampsia (AOR 0.72, 95 % CI 0.68–0.76) and gestational hypertension (AOR 0.80, 95 % CI 0.77–0.83). The population of pregnant women changed, mean age at delivery, pre-pregnancy body mass index (BMI), proportion of obesity and parity increased. A dose-response relationship was found between pre-pregnancy BMI and GDM as there was synergistic effect of parity and maternal obesity on excessive fetal growth. Despite the nutrition interventions and tight control of blood glucose levels LGA infants could not be completely prevented. Beyond metabolic effects, GDM imposes a significant psychological burden; distinct psychological profiles were identified, emphasizing the need for tailored psychosocial support. Ključne besede: gestational diabetes mellitus, prenatal screening, obesity, pregnancy outcomes Objavljeno v DiRROS: 19.03.2026; Ogledov: 321; Prenosov: 177
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9. Carrier screening and pregnancyBorut Peterlin, Ana Marija Peterlin, 2025, pregledni znanstveni članek Povzetek: Recessive genetic conditions impose a significant burden, often leading to severe childhood disorders, many of which remain untreatable. It is estimated that 1–2 % of couples are at risk of having an affected child in the general population, with the risk being significantly higher in consanguineous couples. Understanding the increased risk of having a child with a recessive disorder empowers prospective parents to make informed reproductive choices. With technological advancements, genetic screening has evolved beyond identifying only a few common conditions. Expanded carrier screening (ESC) now offers a single test that covers a comprehensive list of recessive disorders, addressing those that contribute most significantly to the burden of these conditions within specific populations. ESC is recommended for all couples planning a pregnancy, with particular emphasis on consanguineous couples or those who are subfertile. To ensure responsible use of ESC, clinical service delivery should adopt a multidisciplinary approach, providing couples with the information they need to make voluntary, informed decisions. This includes access to high-quality genetic testing, genetic counseling, and psychosocial support. National professional societies and governments play a crucial role in shaping guidelines, policies, oversight, and funding to guarantee equitable access to high-quality ESC services. Ključne besede: assisted reproduction, ESC, equitable access, expanded carrier screening, reproductive autonomy, reproductive risk Objavljeno v DiRROS: 10.03.2026; Ogledov: 292; Prenosov: 239
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10. Current status of newborn screening in Southeastern and Central EuropeNika Požun, Daša Perko, Violeta Anastasovska, Tadej Battelino, Ana Drole Torkar, Matej Mlinarič, Žiga Iztok Remec, Barbka Repič-Lampret, Domen Trampuž, Mojca Žerjav-Tanšek, Urh Grošelj, 2026, izvirni znanstveni članek Povzetek: Newborn screening (NBS) is a well-established public health program that enables early detection and treatment of rare disorders in newborns, preventing severe complications or death. Despite its recognized importance, the scope and implementation of NBS programs vary across Southeastern (SE) and Central Europe. This study aimed to evaluate the current status of NBS in 16 countries of SE and Central Europe and assess progress since the previous survey in 2021. A structured questionnaire was distributed to national experts between April and December 2025, collecting data on program organization, coverage, diseases included, laboratory methods, confirmatory testing, consent practices, and future expansion plans. All countries reported universal screening for congenital hypothyroidism, except Kosovo, where a national NBS is in the process of being established. Expanded NBS using tandem mass spectrometry was available in Austria, Bulgaria, Croatia, Cyprus, Greece, Hungary, North Macedonia, Romania, and Slovenia. Spinal muscular atrophy screening became universal in Austria, Croatia, Hungary, Serbia, and Slovenia. Most countries reported plans for further expansion, with congenital adrenal hyperplasia, severe combined immunodeficiency, spinal muscular atrophy, and cystic fibrosis being the most frequently targeted conditions. Although notable infrastructural progress has been achieved, financial constraints, lack of staff, and organizational barriers remain key challenges. The study’s assessment of program effectiveness was further limited by the absence of region-wide systems for capturing end-to-end performance indicators, such as the age of the infant at treatment initiation or missed cases. Regional collaboration and adoption of best practices are therefore vital to ensure equitable access and continuous advancement of NBS programs. Ključne besede: newborn screening, NBS, Southeastern Europe, Central Europe, neonatal screening, expanded NBS program Objavljeno v DiRROS: 06.03.2026; Ogledov: 397; Prenosov: 258
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