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1.
Insect pest management in the age of synthetic biology
Rubèn Mateos Fernández, Marko Petek, Mojca Juteršek, Iryna Gerasymenko, Špela Baebler, Kalyani Kallam, Elena Moreno Gimenéz, Janine Gondolf, Alfred Nordmann, Kristina Gruden, Diego Orzaez, Nicola Patron, 2022, pregledni znanstveni članek

Povzetek: Arthropod crop pests are responsible for 20% of global annual crop losses, a figure predicted to increase in a changing climate where the ranges of numerous species are projected to expand. At the same time, many insect species are beneficial, acting as pollinators and predators of pest species. For thousands of years, humans have used increasingly sophisticated chemical formulations to control insect pests but, as the scale of agriculture expanded to meet the needs of the global population, concerns about the negative impacts of agricultural practices on biodiversity have grown. While biological solutions, such as biological control agents and pheromones, have previously had relatively minor roles in pest management, biotechnology has opened the door to numerous new approaches for controlling insect pests. In this review, we look at how advances in synthetic biology and biotechnology are providing new options for pest control. We discuss emerging technologies for engineering resistant crops and insect populations and examine advances in biomanufacturing that are enabling the production of new products for pest control.
Ključne besede: biotechnology, insect pest management, synthetic biology
Objavljeno v DiRROS: 05.08.2024; Ogledov: 100; Prenosov: 186
.pdf Celotno besedilo (1,44 MB)
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2.
New tools and recommendations for a better management of harmful algal blooms under the European Marine Strategy Framework Directive
Yolanda Sagarmínaga, Esther Garcés, Janja Francé, Rowena Stern, Marta Revilla, Erika Magaletti, Eileen Bresnan, George Tsirtsis, 2023, pregledni znanstveni članek

Povzetek: Marine harmful algal blooms (HABs), caused by various aquatic microalgae, pose significant risks to ecosystems, some socio-economic activities and human health. Traditionally managed as a public health issue through reactive control measures such as beach closures, seafood trade bans or closure of mollusc production areas, the multifaceted linkages of HABs with environmental and socio-economic factors require more comprehensive ecosystem-based management approach tools to support policies. This study promotes a coordinated understanding and implementation of HAB assessment and management under the Marine Strategy Framework Directive (MSFD), targeting the achievement of Good Environmental Status (GES) in European marine waters. We introduce two novel tools: GES4HABs (GES for HABs) decision tree, and MAMBO (environMental mAtrix for the Management of BlOoms), a decision support matrix. These tools aim to streamline HABs reporting and prioritize resource allocation and management interventions. The GES4HABs decision tree defines a sequence of decision steps to identify HAB management strategies according to their state (evaluated against predefined baselines) and causes (anthropic or natural). MAMBO is proposed to address different HABs and their interaction with human and environmental pressures. The matrix utilizes two axes: natural trophic status and level of human influence, capturing major aspects such as nutrient supply. While acknowledging the limitations of this simplified framework, MAMBO categorizes marine regions into quadrants of varying management viability. Regions with high human influence and eutrophic conditions are identified as most suitable for effective management intervention, whereas regions with minimal or mixed human influence are deemed less amenable to active management. In addition, we explore and describe various indicators, monitoring methods and initiatives that may be relevant to support assessments of HAB status and associated pressures and impacts in the MSFD reporting. Finally, we provide some recommendations to promote the consideration of HABs in ecosystem-based management strategies, intensify efforts for harmonizing and defining best practices of analysis, monitoring and assessment methodologies, and foster international and cross-sectoral coordination to optimize resources, efforts and roles.
Ključne besede: decision support tools, ecosystem-based management, indicators, marine monitoring, eutrophication, marine biotoxins, environmental assessment, pressures and impacts
Objavljeno v DiRROS: 05.08.2024; Ogledov: 82; Prenosov: 109
.pdf Celotno besedilo (1,78 MB)
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3.
Scaphoideus titanus forecasting and management : quo vadis?
Elena Gonella, Giovanni Benelli, Nathalie Arricau-Bouvery, Domenico Bosco, Meta Virant-Doberlet, 2024, pregledni znanstveni članek

Povzetek: Scaphoideus titanus Ball (Hemiptera: Cicadellidae) is a major pest for European viticulture due to its high efficiency in the transmission of one of the most destructive pathogens for grapevine, namely flavescence dorée phytoplasmas. Although it plays a major role in spreading this disease, S. titanus is part of a complex epidemiological cycle involving several alternative vectors with variable relevance for phytoplasma spread. Here we provide an updated review on S. titanus monitoring and modelling, as well as the available tools for management of this pest and for limiting phytoplasma transmission and, thus, also spread. Insecticide-based control is examined; additional emphasis is placed on innovative and low-impact control approaches, such as vibrational mating disruption, biocontrol, and methods to reduce vector competence. We also discuss the main emerging challenges to the implementation of effective and sustainable control programs against S. titanus.
Ključne besede: epidemiology, pest monitoring, modelling, Integrated Pest Management, vibrational mating disruption, biological control, plant resistance elicitors, RNA-interference, symbiotic control, entomology, insects, plant protection
Objavljeno v DiRROS: 23.07.2024; Ogledov: 115; Prenosov: 107
.pdf Celotno besedilo (814,31 KB)
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4.
Heavy metals in the Adriatic-Ionian Seas : a case study to illustrate the challenges in data management when dealing with regional datasets
Maria-Eugenia Molina Jack, Rigers Bakiu, Ana Castelli, Branko Čermelj, Maja Fafanđel, Christina Georgopoulou, Giordano Giorgi, Athanassia Iona, Damir Ivankovic, Martina Kralj, Elena Partescano, Alice Rotini, Melita Velikonja, Marina Lipizer, 2020, izvirni znanstveni članek

Povzetek: Harmonization of monitoring protocols and analytical methods is a crucial issue for transnational marine environmental status assessment, yet not the only one. Coherent data management and quality control become very relevant when environmental status is assessed at regional or subregional scale (e.g., for the Mediterranean or the Adriatic Sea), thus requiring data from different sources. Heavy metals are among the main targets of monitoring activities. Significant efforts have been dedicated to share best practices for monitoring and assessment of ecosystem status and to strengthen the network of national, regional and European large data infrastructures in order to facilitate the access to data among countries. Data comparability and interoperability depend not only on sampling and analytical protocols but also on how data and metadata are managed, quality controlled and made accessible. Interoperability is guaranteed by using common metadata and data formats, and standard vocabularies to assure homogeneous syntax and semantics. Data management of contaminants is complex and challenging due to the high number of information required on sampling and analytical procedures, high heterogeneity in matrix characteristics, but also to the large and increasing number of pollutants. Procedures for quality control on heterogeneous datasets provided by multiple sources are not yet uniform and consolidated. Additional knowledge and reliable long time-series of data are needed to evaluate typical ranges of contaminant concentration. The analysis of a coherent and harmonized regional dataset can provide the basis for a multi-step quality control procedure, which can be further improved as knowledge increases during data validation process.
Ključne besede: contaminants, data management, harmonization, Adriatic Sea, Ionian Sea, pollution, assessment, heavy metals
Objavljeno v DiRROS: 22.07.2024; Ogledov: 133; Prenosov: 118
.pdf Celotno besedilo (2,39 MB)
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5.
Soil water dynamics and olive yield (Olea europaea L.) under different surface drip irrigation treatments in northern Mediterranean
Matic Noč, Urša Pečan, Marina Pintar, Maja Podgornik, 2024, izvirni znanstveni članek

Povzetek: The use of modern irrigation systems and monitoring of soil water status can help improve crop performance and water use efficiency. The influence of different irrigation treatments on soil water content dynamics and olive oil yield was studied over two growing seasons using a surface drip irrigation system in an olive grove in northern Mediterranean climate. Irrigation treatments included optimal irrigation, sustained deficit irrigation (33 % of optimal irrigation), and rainfed treatment. Based on the water applied, we calculated the percentage of replenished estimated evapotranspiration (ETc*) for each treatment using the Penman-Monteith method. Soil water content dynamics were monitored with capacitive probes at five depths (10 to 50 cm). The increase in soil water content at a depth of 30 to 50 cm, which was only achieved with optimal irrigation, resulted in a significantly higher olive oil yield. In contrast, deficit irrigation, despite the addition of water, did not lead to an increase in soil water in the layers below 30 cm, so that the yield was equal to that of rainfed treatment. In irrigated olive groves, it is beneficial to monitor the water content of the soil at several depths to ensure that a sufficient amount of water has been applied.Uporaba sodobnih namakalnih sistemov ter spremljanje stanja vode v tleh lahko pripomore k izboljšanju učinkovitosti rastlinske pridelave in rabe vode. Vpliv različnih načinov namakanja na dinamiko vsebnosti vode v tleh in pri-delek oljčnega olja smo preučevali v dveh rastnih dobah z upo-rabo površinskega kapljičnega namakalnega sistema v oljčnem nasadu v severnem sredozemskem podnebju. Obravnavanja so vključevala optimalno namakanje, trajno namakanje s priman-jkljajem (33 % optimalnega namakanja) in brez namakanja. Na podlagi porabljene vode smo z uporabo metode Penman-Mon-teith izračunali odstotek nadomeščene ocenjene evapotranspi-racije (ETc*) za vsako obravnavo. Dinamiko vsebnosti vode v tleh smo spremljali s kapacitivnimi merilniki na petih globinah (od 10 do 50 cm). Povečanje vsebnosti vode v tleh na globini od 30 do 50 cm, ki je bilo doseženo le z optimalnim namakanjem, je povzročilo večji pridelek oljčnega olja. Nasprotno pa se pri namakanju s primanjkljajem kljub dodajanju vode ni povečala količina vode v tleh v plasteh pod 30 cm, zato je bil pridelek enak pridelku brez namakanja. V namakanih oljčnih nasadih je koristno spremljati vsebnost vode v tleh na več globinah, da se zagotovi, da je bila priskrbljena zadostna količina vode
Ključne besede: diviner, evapotranspiration, irrigation management, olive, soil depths, volumetric soil water content
Objavljeno v DiRROS: 17.07.2024; Ogledov: 115; Prenosov: 139
.pdf Celotno besedilo (1,56 MB)
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6.
Improving taxonomic practices and enhancing its extensibility—an example from araneology
Jason E. Bond, Rebecca L. Godwin, Jordan D. Colby, Lacie G. Newton, Xavier J. Zahnle, Ingi Agnarsson, Christopher A. Hamilton, Matjaž Kuntner, 2022, izvirni znanstveni članek

Povzetek: Planetary extinction of biodiversity underscores the need for taxonomy. Here, we scrutinizespider taxonomy over the last decade (2008–2018), compiling 2083 published accounts of newlydescribed species. We evaluated what type of data were used to delineate species, whether data weremade freely available, whether an explicit species hypothesis was stated, what types of media wereused, the sample sizes, and the degree to which species constructs were integrative. The findings wereport reveal that taxonomy remains largely descriptive, not integrative, and provides no explicitconceptual framework. Less than 4% of accounts explicitly stated a species concept and over one-thirdof all new species described were based on 1–2 specimens or only one sex. Only ~5% of studies madedata freely available, and only ~14% of all newly described species employed more than one line ofevidence, with molecular data used in ~6% of the studies. These same trends have been discovered inother animal groups, and therefore we find it logical that taxonomists face an uphill challenge whenjustifying the scientific rigor of their field and securing the needed resources. To move taxonomyforward, we make recommendations that, if implemented, will enhance its rigor, repeatability, andscientific standards.
Ključne besede: taxonomy, taxonomic crisis, species concepts, data management, monographic research
Objavljeno v DiRROS: 16.07.2024; Ogledov: 122; Prenosov: 60
.pdf Celotno besedilo (442,22 KB)
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7.
Helicobacter pylori treatment results in Slovenia in the period 2013-2015 as a part of European Registry on Helicobacter pylori management
Bojan Tepeš, Marko Kastelic, Miroslav Vujasinović, Polona Lampic, Maja Šeruga, Nataša Brglez Jurecic, Olga Perez Nyssen, Maria G. Donday, Colm O'Morain, Francis Megraud, Adrian G. Mcnicholl, Javier P. Gisbert, 2018, izvirni znanstveni članek

Povzetek: Background. Helicobacter pylori (H. pylori) is the most common chronic bacterial infection in the world affecting over 50% of the world%s population. H. pylori is a grade I carcinogen, responsible for the development of 89 % of noncardia gastric cancers. In the present study we analyzed the data for H. pylori eradication treatments in Slovenia. Patients and methods. Slovenia is a part of the European Registry on Helicobacter pylori Management from the beginning. In seven medical institutions data for H. pylori eradication treatments was collected for 1774 patients from April 16th 2013 to May 15th 2016. For further modified intention to treat (mITT) analysis 1519 patients were eligible and for per protocol (PP) analysis 1346 patients. Results. Patients% dropout was 11.4%. Eradication rate for 7 day triple therapy with proton pump inhibitor (PPI) + Clarithromycin (C) + Amoxicillin (A) was 88.7% PP and 72.0% mITT; for PPI + C + Metronidazole (M) 85.2% PP and 84.4% mITT. Second line 14 day therapy PPI + A + Levofloxacin had 92.3% eradication rate PP and 87.1% mITT. Ten to fourteen day Bismuth quadruple therapy was the therapy in difficult to treat patients. At the end all patients that adhered to prescribed regimens were cured of their H. pylori infection. Conclusions. High dropout rate deserves further analysis. Slovenia is still a country with < 15% H. pylori resistance to clarithromycin, triple therapy with PPI plus two antibiotics reaches PP eradication rate > 85%, but mITT eradication rates are suboptimal.
Ključne besede: Helicobacter pylori, eradication treatment, European Registry on Helicobacter pylori management, Slovenian results
Objavljeno v DiRROS: 02.07.2024; Ogledov: 194; Prenosov: 63
.pdf Celotno besedilo (302,56 KB)

8.
9.
Evolution of RMA in Slovenia
Primož Petek, Tjaša Baloh, Vanda Baloh, 2024, samostojni znanstveni sestavek ali poglavje v monografski publikaciji

Povzetek: This chapter outlines the research management and administration (RMA) as a profession and work field in Slovenia. Thus, we present an overview of the Slovenian research system, describing how this system has evolved over time. In addition, we explain the emerging need for RMA skills, including its self-organisation component and the challenges that lie ahead. A section is dedicated to Slovenian RMA demographics using RAAAP-2 and RAAAP-3 surveys. The conclusions of the chapter focus on a forecast for the future of RMA in Slovenia and several possible paths to follow for its community.
Ključne besede: Slovenia, research management and administration, professionalisation, KOsRIS II, RAAAP, research ecosystem
Objavljeno v DiRROS: 30.04.2024; Ogledov: 388; Prenosov: 156
.pdf Celotno besedilo (734,17 KB)
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10.
Contaminant trends in urban groundwater: case study from Ljubljana (central Slovenia)
Janja Svetina, Joerg Prestor, Brigita Jamnik, Primož Auersperger, Mihael Brenčič, 2024, izvirni znanstveni članek

Povzetek: Urban areas can significantly alter the quality status of aquifers if appropriate strategies to prevent and detect groundwater contamination are not implemented in time. The prevention of groundwater contamination should be a priority due to its potential long-term impact on the environment and the high cost of remediation. For effective and sustainable groundwater management, it is crucial to proactively monitor a wide range of compounds to prevent their spread, progression and increasing concentrations. This study is one of the few to analyse the trends of various urban groundwater contaminants (nitrate, sulphate, hexavalent chromium, pesticides, PCE and TCE) from a groundwater management perspective. Characteristic trends are assessed using linear regression and the Mann–Kendall method, while significant changes in trends are determined using the Darken and Pettitt tests. The time span of the analysed trends covers the transition period before and after the implementation of the Water Framework Directive (2000/60/EC) and the Groundwater Directive (2000/60/EC). This study confirms the effectiveness of enforcement measures to protect groundwater quality, as evidenced by several statistically significant decreasing trends. On the other hand, this study emphasises the importance of intervention-targeted sampling campaigns and the reporting of raw analytical values according to the ISO 11843 series of standards. This approach is essential to detect upward trends in emerging contaminants at an early stage and prevent them from reaching levels that could negatively impact the economy or even jeopardise the safety of drinking water supplies.
Ključne besede: groundwater contamination, contaminant trends, groundwater management, urban aquifer, Ljubljansko polje
Objavljeno v DiRROS: 25.03.2024; Ogledov: 336; Prenosov: 147
.pdf Celotno besedilo (7,36 MB)

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