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Iskalni niz: "ključne besede" (biogeography) .

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1.
Phylogenomic, biogeographic, and evolutionary research trends in arachnology
Matjaž Kuntner, 2022, drugi znanstveni članki

Povzetek: Textbook knowledge tells us that arachnids are a hyper diverse clade of chelicerates that have taken on terrestrial lifestyles. Original papers published in prestigious venues routinely reconstruct details of this purported single terrestrialization event that would have been followed by arachnid diversification on land. However, we are beginning to understand that arachnids are very likely paraphyletic; as such, Arachnida can only circumscribe an assemblage of chelicerates that live terrestrially. If so, arachnid terrestrialization may have taken several independent routes at different historic times. While the diversity and phylogeny of spiders, scorpions and harvestmen may be relatively well documented and understood, additional groups that we deem to be arachnids remain enigmatic and will likely continue to be more or less neglected after this Special Issue. We have here assembled examples of contemporary studies that include both original research as well as reviews focusing on “arachnids” and cover loosely defined biological subdisciplines of phylogenomics, biogeography, and evolution. The latter includes systematics, taxonomy, DNA barcoding, and trait evolution. In this editorial, I introduce the authors of these papers and their featured research, and through this narrative, I pose two questions. The first one is what is arachnology given that arachnids may not be monophyletic? The second question is where should our field be headed toward in the near future?
Ključne besede: biogeography, phylogeny, systematics, evolution, arachnology
Objavljeno v DiRROS: 06.08.2024; Ogledov: 27; Prenosov: 10
.pdf Celotno besedilo (197,54 KB)
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2.
First record of the Canestrini’s goby Ninnigobius canestrinii (Ninni, 1883) : a rare and endangered fish species from Slovenian waters
Domen Trkov, Ana Fortič, 2023, drugi znanstveni članki

Povzetek: The Canestrini’s goby is a small goby endemic to the Adriatic basin, inhabiting brackish and fresh waters. The species is threatened by habitat destruction and pollution. For this reason, the goby is protected in part of its range, while its conservation status in other areas is not yet established. The detailed biogeography of the species should be known so that appropriate conservation measures can be taken. Despite extensive sampling of fish fauna in coastal wetlands, this species has not yet been detected in Slovenia. In this study, the first record of Ninnigobius canestrinii (Ninni, 1883) in Slovenian waters is reported along with a comprehensive review of documented records of the species.
Ključne besede: Gobiidae, endemic goby, endangered species, habitat endangerment, habitat destruction, biogeography, northern Adriatic basin, Slovenia
Objavljeno v DiRROS: 06.08.2024; Ogledov: 26; Prenosov: 12
.pdf Celotno besedilo (570,26 KB)
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3.
Biogeography of the Caribbean Cyrtognatha spiders
Klemen Čandek, Ingi Agnarsson, Greta Binford, Matjaž Kuntner, 2019, izvirni znanstveni članek

Povzetek: Island systems provide excellent arenas to test evolutionary hypotheses pertaining to gene flow and diversification of dispersal-limited organisms. Here we focus on an orbweaver spider genus Cyrtognatha (Tetragnathidae) from the Caribbean, with the aims to reconstruct its evolutionary history, examine its biogeographic history in the archipelago, and to estimate the timing and route of Caribbean colonization. Specifically, we test if Cyrtognatha biogeographic history is consistent with an ancient vicariant scenario (the GAARlandia landbridge hypothesis) or overwater dispersal. We reconstructed a species level phylogeny based on one mitochondrial (COI) and one nuclear (28S) marker. We then used this topology to constrain a time-calibrated mtDNA phylogeny, for subsequent biogeographical analyses in BioGeoBEARS of over 100 originally sampled Cyrtognatha individuals, using models with and without a founder event parameter. Our results suggest a radiation of Caribbean Cyrtognatha, containing 11 to 14 species that are exclusively single island endemics. Although biogeographic reconstructions cannot refute a vicariant origin of the Caribbean clade, possibly an artifact of sparse outgroup availability, they indicate timing of colonization that is much too recent for GAARlandia to have played a role. Instead, an overwater colonization to the Caribbean in mid-Miocene better explains the data. From Hispaniola, Cyrtognatha subsequently dispersed to, and diversified on, the other islands of the Greater, and Lesser Antilles. Within the constraints of our island system and data, a model that omits the founder event parameter from biogeographic analysis is less suitable than the equivalent model with a founder event.
Ključne besede: biogeography, spiders
Objavljeno v DiRROS: 23.07.2024; Ogledov: 92; Prenosov: 72
.pdf Celotno besedilo (1,62 MB)
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4.
Biogeographical history of golden orbweavers : chronology of a global conquest
Eva Turk, Klemen Čandek, Simona Kralj-Fišer, Matjaž Kuntner, 2020, izvirni znanstveni članek

Povzetek: Aim A wholistic biogeographical reconstruction should combine a phylogeny with specifics of organismal biology, plate tectonics and consequent probabilities of historic dispersal events. Here, we demonstrate this approach by reconstructing the geographical origin and sequence of intercontinental colonization of the golden orbweaving spiders, a global clade. We test two alternative hypotheses about their ancestral range. Due to the highest contemporary species diversity in Africa, the ‘Out of Africa’ hypothesis predicts the Afrotropics as their most likely ancestral area. The alternative, ‘Out of West Burma’ hypothesis aims to explain a Burmese amber fossil as stem nephilid. Because the West Burma block probably detached from Australia, then rafted towards Laurasia, either on its own or with India, this hypothesis predicts either Australasia or Indomalaya (or both) as the ancestral area. Location Worldwide. Taxon Golden orbweaving spiders, family Nephilidae. Methods We construct an expanded phylogeny of nephilid spiders and apply RASP (Reconstruct Ancestral State in Phylogenies) to infer their global biogeographical history. We fit the data to six integrated biogeographical models: DEC, DIVALIKE, BAYAREALIKE and their +j variants. We fine-tune the analysis by evaluating varying probabilities of dispersal between geographical areas throughout the clade's evolutionary history. We use the physical distance between the areas as a proxy for dispersal probabilities, thus accounting for plate tectonics. Results The best supported model reconstructs both Australasia and Indomalaya as ancestral area. In several parts of the phylogeny, these areas persist for the estimated 130-million-year evolutionary history. However, numerous intercontinental shifts in nephilid biogeographical history are also inferred. Since nephilid origins are clearly Gondwanan, our study supports the interpretations that Burmese amber contains Gondwanan biota. Main conclusions These results are consistent with the Out of West Burma hypothesis but reject the Out of Africa hypothesis. That certain clades persist in their ancestral ranges while others may shift continents aligns well with the known nephilid biology. Our methodological approach that assesses organismal specific dispersal probabilities through concrete distances measured though time slices of the Earth's history can be applied to biogeographical reconstruction of any lineage.
Ključne besede: spiders, golden orbweavers, Nephilidae, reconstruction of lineage, biogeography
Objavljeno v DiRROS: 22.07.2024; Ogledov: 96; Prenosov: 130
.pdf Celotno besedilo (1,90 MB)
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5.
Biogeography of Long-Jawed Spiders Reveals Multiple Colonization of the Caribbean
Klemen Čandek, Ingi Agnarsson, Greta Binford, Matjaž Kuntner, 2021, izvirni znanstveni članek

Povzetek: Dispersal ability can affect levels of gene flow thereby shaping species distributions and richness patterns. The intermediate dispersal model of biogeography (IDM) predicts that in island systems, species diversity of those lineages with an intermediate dispersal potential is the highest. Here, we tested this prediction on long-jawed spiders (Tetragnatha) of the Caribbean archipelago using phylogenies from a total of 318 individuals delineated into 54 putative species. Our results support a Tetragnatha monophyly (within our sampling) but reject the monophyly of the Caribbean lineages, where we found low endemism yet high diversity. The reconstructed biogeographic history detects a potential early overwater colonization of the Caribbean, refuting an ancient vicariant origin of the Caribbean Tetragnatha as well as the GAARlandia land-bridge scenario. Instead, the results imply multiple colonization events to and from the Caribbean from the mid-Eocene to late-Miocene. Among arachnids, Tetragnatha uniquely comprises both excellently and poorly dispersing species. A direct test of the IDM would require consideration of three categories of dispersers; however, long-jawed spiders do not fit one of these three a priori definitions, but rather represent a more complex combination of attributes. A taxon such as Tetragnatha, one that readily undergoes evolutionary changes in dispersal propensity, can be referred to as a ‘dynamic disperser’.
Ključne besede: Tetragnatha, dynamic disperser, intermediate dispersal model of biogeography, GAARlandia
Objavljeno v DiRROS: 19.07.2024; Ogledov: 81; Prenosov: 23
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6.
Towards better-informed dispersal probabilities in historical biogeography : arachnids as a model lineage
Matjaž Kuntner, Eva Turk, 2022, izvirni znanstveni članek

Povzetek: Historical biogeography is an integrative scientific field critical for testing evolutionary hypotheses pertinent to organismal distributions, but despite recent theoretical and analytical advances, biogeographic reconstructions continue to struggle with accuracy and rigor. Most modern studies include the three elements needed for historical biogeographic inference, namely a time-calibrated phylogeny, contemporary taxonomic distributions, and estimations of organismal dispersal probabilities. The latter, we argue, are particularly vague, and historical biogeography would greatly benefit from dispersal probability estimations that are better informed and biologically meaningful. To achieve that goal, next-generation biogeography should ideally consider: a) dispersal-related traits; b) ecology; c) geological histories; and d) geographical factors. We briefly recap the three case studies on spiders that have pioneered this approach. Due to their old age and mega-diversity—considering both phylogenetic and life style diversity—arachnids are an ideal animal lineage for modern biogeographic research. There is no reason, however, that the concept should not be applied to all life. Further modifications of the proposed concept and, particularly, methodological implementation are needed to render this biogeographic framework widely useful.
Ključne besede: next-generation biogeography, ancestral areas, dispersal biology, geological history, vicariance, extinction, arachnids
Objavljeno v DiRROS: 18.07.2024; Ogledov: 98; Prenosov: 61
.pdf Celotno besedilo (1,10 MB)
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7.
A new perspective on the molecular dating of the stone crayfsh with an extended phylogeographic information on the species
David Stanković, Katarina Zorić, Simona Đuretanović, Gorana Stamenković, Marija Ilić, Vanja Marković, Saša Marić, 2024, izvirni znanstveni članek

Povzetek: Reconstructing the origin and historical biogeography of the Austropotamobius torrentium is hampered by insufcient phylogeographic coverage of the Balkans and deep contradictions in previous molecular dating. The present work extends the phylogeographic coverage to Serbia, a country crucial for understanding the species southward dispersal. Our analysis revealed that the Southern Balkans lineage occurs in most of the country, the Central and southeastern Europe lineage is restricted to the southwest and northeast of the country, while a single population in the north of the country harbors the Lika and Dalmatia lineage, which was previously thought to be restricted to the northern-central Dinarides. Dataset expansion led to revised phylogenetic relationships, which indicated that the Apuseni lineage is not nested within Northern-central Dinarides lineages but arose after the most basal split within Austropotamobius torrentium. This ‘Apuseni frst’ phylogeny provides a new perspective for molecular dating, according to which the split between Austropotamobius pallipes and A. torrentium took place in the Late Oligocene, while the formation of the phyletic lineages and the dispersal from the Dinarides to Serbia occurred in the late Miocene and is probably associated with the complex and protracted process of disintegration of the Neogene freshwater lakes in southeastern Europe.
Ključne besede: Austropotamobius torrentium, Austropotamobius bihariensis, divergence time estimation conficts, historical biogeography, neogene lakes, Serbia
Objavljeno v DiRROS: 09.07.2024; Ogledov: 124; Prenosov: 99
.pdf Celotno besedilo (3,73 MB)
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8.
Matrix type affects carabid beetle community and trait composition, and intraspecific variation in remnant forests
D. Johan Kotze, Matic Gabor, S. Kohout, Heikki Setälä, 2024, izvirni znanstveni članek

Povzetek: Aim: The Anthropocene is characterised by urban and agricultural landscapes. Within these landscapes, natural to semi-natural habitats are fragmented, isolated and disturbed to varying degrees. Species associated with these natural habitats have to content with the surrounding landscape, both in terms of level of isolation, and matrix type and quality. We investigated the community structure, trait distribution and individual traits of carabid beetles in boreal forest fragments within three matrices: urban, agricultural and freshwater lake. Location: City of Lahti and its surroundings, southern Finland. Taxon: Coleoptera, Carabidae. Methods: Using pitfall traps from June to October 2019, we collected carabid beetles from eight spruce-dominated forest fragments in the urban matrix, 10 fragments in an agricultural matrix, seven fragments on lake islands and three large control forests at the outskirts of the city. Results: Compared to natural forests, carabid beetles in forest fragments in these matrices showed distinct assemblages, and with beetle diversity the highest in fragments in the agricultural landscape. Fragments in the urban and lake island landscapes were characterised by small-sized species, and those capable of flight. We also found strong intraspecific trait responses in terms of body size, with some generalist species being significantly smaller in urban, agricultural or lake island fragments compared to the controls. Main Conclusions: The matrix has a clear effect on carabid beetle communities, both in terms of taxonomic and trait distribution, and filters for communities of smaller sized species and those capable of flight. Such overall community and intraspecific effects can have considerable effects on populations and community assemblages: As anthropogenic effects intensify in urban and agricultural landscapes, our findings may be the expression of further morphological and physiological responses, and eventually in the adaptation of those species that can cope with the Anthropocene.
Ključne besede: biogeography, ground beetle, urban lake, agricultural lake, freshwater lake, zoology
Objavljeno v DiRROS: 16.05.2024; Ogledov: 263; Prenosov: 371
.pdf Celotno besedilo (8,13 MB)
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9.
More losses than gains? : Distribution models predict species-specific shifts in climatic suitability for European beech forest herbs under climate change
Janez Kermavnar, Lado Kutnar, Aleksander Marinšek, 2023, izvirni znanstveni članek

Povzetek: Introduction: Herbaceous plant species constitute an essential element of the flora of European beech (Fagus sylvatica) forests. There is increasing evidence that rapidly changing climate is likely to modify the spatial distribution of plant species. However, we lack understanding of the impact that climate change might have on beech forest herbs across the European continent. We investigated the possible effects of predicted increasing rates of global warming and altered precipitation regimes on 71 forest herbs closely associated with beech forests, but with varying biogeographic and climatic niche attributes. Methods: By using a total of 394,502 occurrence records and an ensemble of species distribution models (SDMs), we quantified the potential current distribution and future (2061-2080) range shifts in climatic suitability (expressed as occurrence probability, OP) according to two climate change scenarios (moderate SSP2-4.5 and severe SSP5-8.5). Results: Overall, precipitation of the warmest quarter and temperature seasonality were the most influential predictors in shaping current distribution patterns. For SSP5-8.5 scenario, all studied species experienced significant reductions (52.9% on average) in the total size of highly suitable areas (OP >0.75). However, the magnitude and directions of changes in the climatic suitability were highly species-specific; few species might even increase OP in the future, particularly in case of SSP2-4.5 scenario. The SDMs revealed the most substantial decline of climatic suitability at the trailing edges in southern Europe. We found that climatic suitability is predicted to show unidirectional northward shift and to move toward higher elevations. The gain/loss ratio was generally higher for narrow-ranged species compared to widespread taxa. Discussion: Our findings are contextualized with regards to potential confounding factors (dispersal limitation, microclimatic buffering) that may mitigate or accelerate climate change impacts. Given the low long-distance migration ability, many beech forest herbs are unlikely to track the velocity with which macroclimatic isotherms are moving toward higher latitudes, making this species group particularly vulnerable to climate change.
Ključne besede: species distribution modelling, global warming, range shift, climatic niche, biogeography, Europe
Objavljeno v DiRROS: 29.11.2023; Ogledov: 445; Prenosov: 233
.pdf Celotno besedilo (8,49 MB)
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10.
Geographical variation in abdominal colour pattern in Criorhina pachymera (Egger, 1858) (Diptera: Syrphidae)
Jan Bisschop, Maarten De Groot, Gaël Pétremand, 2023, izvirni znanstveni članek

Povzetek: The bee-mimicking hoverfly species Criorhina pachymera shows pronounced geographical variation in abdominal colour pattern. Based on 218 records from 22 European countries, we describe six abdomen forms divided over two main groups. Group A in western, northern and central parts of Europe contains abdomen forms A1–A3 with slender pollinose bands on the third and fourth tergite. Group B in south-eastern Europe contains forms B1–B3 with broad pollinose bands. These groups are separated by the Alps and the Carpathians, such as the separation of the original distributions of the two main postglacial recolonization lineages of honey bees in Europe. As these honey bee groups differ by the width of the pollinose bands on the third to fifth tergite, Batesian mimicry can explain the group distribution of C. pachymera with slender or broad pollinose bands. The different forms of C. pachymera in both groups are categorised by the extent of orange colouration on the second and third tergite. The darkest form A1, has a widespread distribution in Europe. Intermediate bright forms A2 and A3 occur predominantly in a belt along the southern margin of the group A distribution and in Sweden. Dark form B1 and intermediate bright form B2 occur on the Balkan peninsula and in neighbouring regions. The brightest form B3, is found in Italy, Switzerland (Ticino) and Greece. There is an average increase in the extent of orange colouration on the second and third tergite with decreasing geographical latitude, making temperature a likely additional cause for the described abdominal colour variation.
Ključne besede: hoverflies, colour variation, biogeography, Batesian mimicry, citizen science data
Objavljeno v DiRROS: 28.03.2023; Ogledov: 780; Prenosov: 295
.pdf Celotno besedilo (2,74 MB)
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