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1.
Interannual size changes of adult Aurelia sp.5 medusae stage in the Marine protected Area of Mljet Island South Adriatic
Tjaša Kogovšek, Juan Carlos Molinero, Davor Lučić, Ivona Onofri, Barbara Gangai, Marijana Miloslavić, Delphine Bonnet, Alenka Malej, 2012, izvirni znanstveni članek

Povzetek: Aurelia aurita s.l. is the most widespread scyphozoan jellyfish that recurrently appear “en mass” and forms large aggregations mainly in coastal waters, embayments and estuaries. Beside anthropogenic factors controlling jellyfish populations climate change may play an important role. The aim of this study was to assess whether climate-related factors in absence of other anthropogenically induced stressor influence medusae size. We investigated seasonal and interannual changes in the size of Aurelia in a “jelly lake” in the National Park of Mljet Island (Croatia) where minimal human impact on the environment makes the Veliko Jezero a natural mesocosm for understanding the impact of climate change on the Aurelia population. The observed changes suggest Aurelia medusa population response to changing environment, in particular to enhanced temperature, by reduced body sizes. Comparison of Aurelia population dynamics from different regions in the Mediterranean Sea revealed the unique feature of the Veliko Jezero population. Despite the similarity of the environmental windows of medusae occurrences in the Veliko Jezero and regions in the Mediterranean Sea, medusae in the Veliko Jezero are present all year round. It seems that the lake bathymetry enables medusae to vertically migrate to deeper and cooler water layer, avoiding the limiting temperatures developed in the upper layer during the summer. These conditions may prolong the Aurelia medusae life span and together with continuous strobilation support the stability of the Aurelia medusae population all year round.
Ključne besede: Mediterraneum, moon jellyfish, Adriatic Sea, South Adriatic Sea, marine lakes, Aurelia spp, climate-related factor, Mediterranean Sea, marine research, population dynamics
Objavljeno v DiRROS: 05.08.2024; Ogledov: 102; Prenosov: 57
.pdf Celotno besedilo (322,64 KB)
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2.
Seasonal variation in marine-snow-associated and ambient-water prokaryotic communities in the northern Adriatic Sea
Jana Vojvoda, Dominique Lamy, Eva Sintes, Juan A.L. Garcia, Valentina Turk, Gerhard J. Herndl, 2014, izvirni znanstveni članek

Povzetek: The structure and activity of prokaryotic communities were determined in marine snow and in the ambient water of the northern Adriatic Sea in different seasons (autumn, spring and summer). The seasonal variation in the composition of marine-snow-associated and ambient-water bacterial communities was assessed by T-RFLP (Terminal Restriction Fragment Length Polymorphism) on the 16S rRNA gene (16S rDNA) and 16S rRNA transcript (16S rRNA) level. On the 16S rDNA level, the bacterial community composition of the marine snow and ambient water was similar in summer and autumn, but not in spring. In contrast, on the 16S rRNA level, indicative of the active bacterial community, the marine-snow-associated bacterial community was different from that of the ambient-water, and different from the bacterial community on the 16S rDNA level, except in autumn. To phylogenetically characterize the bacterial and archaeal community composition associated with marine snow and the ambient water, clone libraries of 16S rDNA and 16S rRNA were constructed from 2 contrasting seasons. Phylogenetic profiling revealed a higher similarity among bacterial communities in summer compared to late autumn. Certain bacterial and archaeal groups were exclusively associated with summer or autumn marine snow, suggesting that marine-snow-associated prokaryotic communities are subjected to successional changes similar to ambient-water communities. Moreover, the presence of bacterial groups enriched in marine snow including Vibrionales and sulphate-reducing bacteria is consistent with niche partitioning and metabolic adaptations of the particle-associated microbiota.
Ključne besede: marine snow, free-living-bacteria, Northern Adriatic sea
Objavljeno v DiRROS: 02.08.2024; Ogledov: 112; Prenosov: 71
.pdf Celotno besedilo (387,65 KB)
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3.
A protocol for accurate radiochromic film dosimetry using Radiochromic.com
Ignasi Méndez Carot, Juan José Rovira-Escutia, Božidar Casar, 2021, izvirni znanstveni članek

Povzetek: Radiochromic films have many applications in radiology and radiation therapy. Generally, the dosim-etry system for radiochromic film dosimetry is composed of radiochromic films, flatbed scanner, and film analysis soft-ware. The purpose of this work is to present the effectiveness of a protocol for accurate radiochromic film dosimetry using Radiochromic.com as software for film analysis.Materials and methods. Procedures for image acquisition, lot calibration, and dose calculation are explained and analyzed. Radiochromic.com enables state-of-the-art models and corrections for radiochromic film dosimetry, such as the Multigaussian model for multichannel film dosimetry, and lateral, inter-scan, and re-calibration corrections of the response.Results. The protocol presented here provides accurate dose results by mitigating the sources of uncertainty that affect radiochromic film dosimetry. Conclusions. Appropriate procedures for film and scanner handling in combination with Radiochromic.com as software for film analysis make easy and accurate radiochromic film dosimetry feasible.
Ključne besede: radiochromic film, dosimetry, protocol
Objavljeno v DiRROS: 22.07.2024; Ogledov: 156; Prenosov: 87
.pdf Celotno besedilo (1,85 MB)
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4.
Hay meadow vibroscape and interactions within insect vibrational community
Rok Šturm, Behare Rexhepi, Juan José López Díez, Andrej Blejec, Jernej Polajnar, Jérôme Sueur, Meta Virant-Doberlet, 2021, izvirni znanstveni članek

Povzetek: Our experiences shape our knowledge and understanding of the world around us. The natural vibrational environment (vibroscape) is hidden to human senses but is nevertheless perceived and exploited by the majority of animals. Here, we show that the vibroscape recorded on plants in a temperate hay meadow is a dynamic low-frequency world, rich in species-specific vibrational signals. The overall vibroscape composition changed throughout the season and also depended on the plant species, as well as on the spatial position of individual plants within the meadow. Within the studied community, vibrationally signaling species sharing this communication channel avoided interference primarily by partitioning vibrational space on a fine temporal scale. The vibroscape is a reliable source of information in the environment and expands our understanding of ecological and evolutionary processes.
Objavljeno v DiRROS: 19.07.2024; Ogledov: 137; Prenosov: 134
.pdf Celotno besedilo (4,65 MB)
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5.
Physiological and transcriptional responses to saline irrigation of young ‘Tempranillo’ vines grafted onto different rootstocks
Ignacio Buesa, Juan G. Pérez-Pérez, Fernando Visconti, Rebeka Strah, Diego S. Intrigliolo, Luis Bonet, Kristina Gruden, Maruša Pompe Novak, Jose M. de Paz, 2022, izvirni znanstveni članek

Povzetek: The use of more salt stress-tolerant vine rootstocks can be a sustainable strategy for adapting traditional grapevine cultivars to future conditions. However, how the new M1 and M4 rootstocks perform against salinity compared to conventional ones, such as the 1103-Paulsen, had not been previously assessed under real field conditions. Therefore, a field trial was carried out in a young ‘Tempranillo’ (Vitis vinifera L.) vineyard grafted onto all three rootstocks under a semi-arid and hot-summer Mediterranean climate. The vines were irrigated with two kinds of water: a non-saline Control with EC of 0.8 dS m–1 and a Saline treatment with 3.5 dS m–1. Then, various physiological parameters were assessed in the scion, and, additionally, gene expression was studied by high throughput sequencing in leaf and berry tissues. Plant water relations evidenced the osmotic effect of water quality, but not that of the rootstock. Accordingly, leaf-level gas exchange rates were also reduced in all three rootstocks, with M1 inducing significantly lower net photosynthesis rates than 1103-Paulsen. Nevertheless, the expression of groups of genes involved in photosynthesis and amino acid metabolism pathways were not significantly and differentially expressed. The irrigation with saline water significantly increased leaf chloride contents in the scion onto the M-rootstocks, but not onto the 1103P. The limitation for leaf Cl– and Na+ accumulation on the scion was conferred by rootstock. Few processes were differentially regulated in the scion in response to the saline treatment, mainly, in the groups of genes involved in the flavonoids and phenylpropanoids metabolic pathways. However, these transcriptomic effects were not fully reflected in grape phenolic ripeness, with M4 being the only one that did not cause reductions in these compounds in response to salinity, and 1103-Paulsen having the highest overall concentrations. These results suggest that all three rootstocks confer short-term salinity tolerance to the scion. The lower transcriptomic changes and the lower accumulation of potentially phytotoxic ions in the scion grafted onto 1103-Paulsen compared to M-rootstocks point to the former being able to maintain this physiological response in the longer term. Further agronomic trials should be conducted to confirm these effects on vine physiology and transcriptomics in mature vineyards.
Ključne besede: osmotic adjustment, gas exchange, gene expression, water relations, Vitis vinifera L. (grapevine), salinity tolerance
Objavljeno v DiRROS: 17.07.2024; Ogledov: 131; Prenosov: 105
.pdf Celotno besedilo (2,32 MB)
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6.
Is it time for ecotremology?
Rok Šturm, Juan José López Díez, Jernej Polajnar, Jérôme Sueur, Meta Virant-Doberlet, 2022, izvirni znanstveni članek

Povzetek: Our awareness of air-borne sounds in natural and urban habitats has led to the recent recognition of soundscape ecology and ecoacoustics as interdisciplinary fields of research that can help us better understand ecological processes and ecosystem dynamics. Because the vibroscape (i.e., the substrate-borne vibrations occurring in a given environment) is hidden to the human senses, we have largely overlooked its ecological significance. Substrate vibrations provide information crucial to the reproduction and survival of most animals, especially arthropods, which are essential to ecosystem functioning. Thus, vibroscape is an important component of the environment perceived by the majority of animals. Nowadays, when the environment is rapidly changing due to human activities, climate change, and invasive species, this hidden vibratory world is also likely to change without our notice, with potentially crucial effects on arthropod communities. Here, we introduce ecotremology, a discipline that mainly aims at studying substrate-borne vibrations for unraveling ecological processes and biological conservation. As biotremology follows the main research concepts of bioacoustics, ecotremology is consistent with the paradigms of ecoacoustics. We argue that information extracted from substrate vibrations present in the environment can be used to comprehensively assess and reliably predict ecosystem changes. We identify key research questions and discuss the technical challenges associated with ecotremology studies.
Ključne besede: ecotremology, monitoring, hidden biodiversity, vibroscape, vibrational communication
Objavljeno v DiRROS: 16.07.2024; Ogledov: 136; Prenosov: 121
.pdf Celotno besedilo (3,92 MB)
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7.
Worldwide tests of generic attractants, a promising tool for early detection of non-native cerambycid species
Alain Roques, Lili Ren, Davide Rassati, Juan Shi, Evgueni Akulov, Alenka Žunič Kosi, 2023, izvirni znanstveni članek

Povzetek: A large proportion of the insects which have invaded new regions and countries are emerging species, being found for the first time outside their native range. Being able to detect such species upon arrival at ports of entry before they establish in non-native countries is an urgent challenge. The deployment of traps baited with broad-spectrum semiochemical lures at ports-of-entry and other high-risk sites could be one such early detection tool. Rapid progress in the identification of semiochemicals for cerambycid beetles during the last 15 years has revealed that aggregation-sex pheromones and sex pheromones are often conserved at global levels for genera, tribes or subfamilies of the Cerambycidae. This possibly allows the development of generic attractants which attract multiple species simultaneously, especially when such pheromones are combined into blends. Here, we present the results of a worldwide field trial programme conducted during 2018–2021, using traps baited with a standardised 8-pheromone blend, usually complemented with plant volatiles. A total of 1308 traps were deployed at 302 sites covering simultaneously or sequentially 13 European countries, 10 Chinese provinces and some regions of the USA, Canada, Australia, Russia (Siberia) and the Caribbean (Martinique). We intended to test the following hypotheses: 1) if a species is regularly trapped in significant numbers by the blend on a continent, it increases the probability that it can be detected when it arrives in other countries/continents and 2) if the blend exerts an effective, generic attraction to multiple species, it is likely that previously unknown and unexpected species can be captured due to the high degree of conservation of pheromone structures within related taxa. A total of 78,321 longhorned beetles were trapped, representing 376 species from eight subfamilies, with 84 species captured in numbers greater than 50 individuals. Captures comprised 60 tribes, with 10 tribes including more than nine species trapped on different continents. Some invasive species were captured in both the native and invaded continents. This demonstrates the potential of multipheromone lures as effective tools for the detection of ‘unexpected’ cerambycid invaders, accidentally translocated outside their native ranges. Adding new pheromones with analogous well-conserved motifs is discussed, as well as the limitations of using such blends, especially for some cerambycid taxa which may be more attracted by the trap colour or other characteristics rather than to the chemical blend.
Ključne besede: pheromone trapping, invasion, early detection, Holarctic, multi-pheromone blend
Objavljeno v DiRROS: 12.07.2024; Ogledov: 123; Prenosov: 135
.pdf Celotno besedilo (4,79 MB)
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8.
Sclerosing melanocytic lesions (sclerosing melanomas with nevoid features and sclerosing nevi with pseudomelanomatous features) : an analysis of 90 lesions
Biljana Grčar-Kuzmanov, Emanuela Boštjančič, Juan Antonio Contreras, Jože Pižem, 2018, izvirni znanstveni članek

Povzetek: Background. Sclerosing melanocytic lesions, which are characterized by either focal or diffuse sclerosis in the dermal component and atypical proliferation of predominantly nevoid melanocytes, remain poorly defined. Our aim was to analyze systematically their morphologic spectrum, especially the distinction between sclerosing melanocytic nevus and sclerosing melanoma, which has not been well documented. Patients and methods. We collected 90 sclerosing melanocytic lesions, occurring in 82 patients (49 male, 33 female; age range from 21 to 89 years). A four probe fluorescent in situ hybridization (FISH) assay was performed in 41 lesions to substantiate the diagnosis of sclerosing melanomas. Results. A prominent full-thickness pagetoid spread of melanocytes was identified in 44 (48%) lesions, and a melanoma in situ adjacent to the sclerosis in 55 (61%) lesions. In the intrasclerotic component, maturation was absent in 40 (44%) and mitotic figures were identified in 18 (20%) lesions. Of the 90 lesions, 26 (29%) were diagnosed morphologically as nevi and 64 (71%) as melanomas (Breslow thickness from 0.4 to 1.8 mm), including 45 (50%) melanomas with an adjacent nevus. A four-probe FISH assay was positive in the sclerotic component in 14 of 25 lesions diagnosed morphologically as melanomas and none of 16 nevi. A sentinel lymph node biopsy was performed for 17 lesions and was negative in all cases. Conclusions. Sclerosing melanocytic lesions form a morphologic spectrum and include both nevi and melanomas. The pathogenesis of sclerosis remains obscure but seems to be induced by melanocytes or an unusual host response in at least a subset of lesions.
Ključne besede: sclerosing melanoma, sclerosing nevus, fibrosis
Objavljeno v DiRROS: 02.07.2024; Ogledov: 193; Prenosov: 178
.pdf Celotno besedilo (1,34 MB)

9.
Urban greenspaces and nearby natural areas support similar levels of soil ecosystem services
David J. Eldridge, Haiying Cui, Jingyi Ding, Miguel Berdugo, Tadeo Sáez-Sandino, Jorge Duran, Juan J. Gaitan, José L. Blanco-Pastor, Alexandra Rodríguez, César Plaza, Tine Grebenc, Tina Unuk Nahberger, 2024, izvirni znanstveni članek

Povzetek: Greenspaces are important for sustaining healthy urban environments and their human populations. Yet their capacity to support multiple ecosystem services simultaneously (multiservices) compared with nearby natural ecosystems remains virtually unknown. We conducted a global field survey in 56 urban areas to investigate the influence of urban greenspaces on 23 soil and plant attributes and compared them with nearby natural environments. We show that, in general, urban greenspaces and nearby natural areas support similar levels of soil multiservices, with only six of 23 attributes (available phosphorus, water holding capacity, water respiration, plant cover, arbuscular mycorrhizal fungi (AMF), and arachnid richness) significantly greater in greenspaces, and one (available ammonium) greater in natural areas. Further analyses showed that, although natural areas and urban greenspaces delivered a similar number of services at low (>25% threshold) and moderate (>50%) levels of functioning, natural systems supported significantly more functions at high (>75%) levels of functioning. Management practices (mowing) played an important role in explaining urban ecosystem services, but there were no effects of fertilisation or irrigation. Some services declined with increasing site size, for both greenspaces and natural areas. Our work highlights the fact that urban greenspaces are more similar to natural environments than previously reported and underscores the importance of managing urban greenspaces not only for their social and recreational values, but for supporting multiple ecosystem services on which soils and human well-being depends.
Ključne besede: soil, ecosystem services, urban forests
Objavljeno v DiRROS: 17.04.2024; Ogledov: 328; Prenosov: 153
.pdf Celotno besedilo (1,91 MB)
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10.
Numerical heat transfer model for swelling intumescent coatings during heating
Andrea Lucherini, Juan P. Hidalgo, Jose L. Torero, Cristian Maluk, 2023, izvirni znanstveni članek

Povzetek: This research study presents a heat transfer model aimed at estimating the thermal and physical response of intumescent coatings. The numerical model is inspired by the outcomes of an experimental study focused on analysing the insulating effectiveness of a commercial intumescent coating for a range of heating conditions and initial coating thickness. The model solves the one-dimensional heat conduction problem using the finite-difference Crank-Nicolson method, and it assumes that the effectiveness of intumescent coatings is mainly dependent on their ability to develop swelled porous char. The coating swelling is implemented in the model by adopting an approach based on expanding the mesh representing the physical domain in proximity to the substrate-coating interface. The model described herein offers researchers and engineers a tool to estimate the heat transfer of swelling intumescent coatings (i.e. in-depth thermal gradient). Outcomes of the analysis shown herein demonstrate that the heat conduction within intumescent coatings is governed by the physical coating swelling and the thermal conditions at the coating-substrate interface. The numerical model shows that its accuracy is highly influenced by the coating thickness ahead of the reaction zone. Consequently, the coating swelling rate plays a key role, while the thermo-physical properties of the intumescent coating have a secondary effect. According to its assumptions, the model defines a quasi-steady-state thermal problem: it is more accurate for conditions close to steady-state (e.g. high heat fluxes), but it loses accuracy for cases characterised by transient phenomena (e.g. phases prior to the onset of swelling and low heat fluxes).
Ključne besede: intumescent coatings, heat transfer, numerical model, swelling, fire safety
Objavljeno v DiRROS: 08.01.2024; Ogledov: 389; Prenosov: 65
.pdf Celotno besedilo (1,21 MB)
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