1. Using multi-tracer inference to move beyond single-catchment ecohydrology : invited reviewBenjamin W. Abbott, Viktor Baranov, Clara Mendoza-Lera, Mukundh Narayanan Balasubramanian, José Gonçalves, Stefan Krause, 2016, pregledni znanstveni članek Povzetek: Protecting or restoring aquatic ecosystems in the face of growing anthropogenic pressures requires an understanding of hydrological and biogeochemical functioning across multiple spatial and temporal scales. Recent technological and methodological advances have vastly increased the number and diversity of hydrological, biogeochemical, and ecological tracers available, providing potentially powerful tools to improve understanding of fundamental problems in ecohydrology, notably: 1. Identifying spatially explicit flowpaths, 2. Quantifying water residence time, and 3. Quantifying and localizing biogeochemical transformation. In this review, we synthesize the history of hydrological and biogeochemical theory, summarize modern tracer methods, and discuss how improved understanding of flowpath, residence time, and biogeochemical transformation can help ecohydrology move beyond description of site-specific heterogeneity. We focus on using multiple tracers with contrasting characteristics (crossing proxies) to infer ecosystem functioning across multiple scales. Specifically, we present how crossed proxies could test recent ecohydrological theory, combining the concepts of hotspots and hot moments with the Damköhler number in what we call the HotDam framework.
Ključne besede: hydrological tracer, environmental hydrology, ecohydrology, aquatic ecology
Objavljeno v DiRROS: 06.08.2024; Ogledov: 99; Prenosov: 139
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2. Enhanced detection of pathogenic enteric viruses in coastal marine environment by concentration using methacrylate monolithic chromatographic supports paired with quantitative PCRMukundh Narayanan Balasubramanian, Nejc Rački, José Gonçalves, Katarina Kovač, Magda Tušek-Žnidarič, Valentina Turk, Maja Ravnikar, Ion Gutiérrez-Aguirre, 2016, izvirni znanstveni članek Povzetek: Currently, around 50% of the world's population lives in towns and cities within 100 km of the coast. Monitoring of viruses that are frequently present in contaminated coastal environments, such as rotavirus (RoV) and norovirus (NoV), which are also the major cause of human viral gastroenteritis, is essential to ensure the safe use of these water bodies. Since exposure to as few as 10–100 particles of RoV or NoV may induce gastrointestinal disease, there is a need to develop a rapid and sensitive diagnostic method for their detection in coastal water samples. In this study, we evaluate the application of methacrylate monolithic chromatographic columns, commercially available as convective interaction media (CIM®), to concentrate pathogenic enteric viruses from saline water samples prior to virus quantification by one-step reverse transcription quantitative PCR (RT-qPCR). Using RoV and NoV as model enteric viruses, we present our results on the most effective viral concentration conditions from saline water matrices using butyl (C4) hydrophobic interaction monolithic support (CIM® C4). C4 monolithic columns exhibit a good capacity to bind both RoV and NoV and both viruses can be eluted in a single step. Our protocol using a 1 ml C4 column enables processing of 400 ml saline water samples in less than 60 min and increases the sensitivity of RoV and NoV detection by approximately 50-fold and 10-fold respectively. The protocol was also scaled up using larger capacity 8 ml C4 columns to process 4000 ml of seawater samples with concentration factors of 300-fold for RoV and 40-fold for NoV, without any significant increase in processing time. Furthermore, C4 monolithic columns were adapted for field use in an on-site application of RoV concentration from seawater samples with performance equivalent to that of the reference laboratory setup. Overall, the results from successful deployment of CIM C4 columns for concentration of rotavirus and norovirus in seawater samples reiterate the utility of monolithic supports as efficient, scalable and modular preparative tools for processing environmental water samples to enhance viral detection using molecular methods.
Ključne besede: rotavirus, norovirus, seawater, fecal contamination, qPCR, sewage
Objavljeno v DiRROS: 25.07.2024; Ogledov: 143; Prenosov: 71
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3. Surveillance of human enteric viruses in coastal waters using concentration with methacrylate monolithic supports prior to detection by RT-qPCRJosé Gonçalves, Ion Gutiérrez-Aguirre, Mukundh Narayanan Balasubramanian, Maja Zagorščak, Maja Ravnikar, Valentina Turk, 2018, izvirni znanstveni članek Povzetek: This is the first surveillance study using methacrylate monolithic supports to concentrate environmental coastal water samples, prior to molecular target detection by RT-qPCR. Rotaviruses (RoV) and Noroviruses (NoV) were monitored in a polluted area at the Bay of Koper (Gulf of Trieste, Northern Adriatic Sea) and at a nearby bathing area and mussel farm areas.
RoV and NoV are released into the Bay of Koper, with higher rates close to the discharge of the wastewater treatment plant, however, they can be detected at recreational and mussel farming areas. Our results showed that water bodies considered safe based on FC concentrations, can still have low, yet potentially infective, concentrations of human viruses.
Ključne besede: Rotavirus, Norovirus, faecal coliforms, RT-qPCR, methacrylate monolithic columns, enteric virus concentration
Objavljeno v DiRROS: 24.07.2024; Ogledov: 141; Prenosov: 66
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4. Lastnosti lesa iz rudnika SitarjevecMiha Humar, Boštjan Lesar, Davor Kržišnik, Andreja Pondelak, Andrijana Sever Škapin, Angela Balzano, José Gonçalves, 2024, izvirni znanstveni članek Povzetek: Rudarska tradicija v Litiji, segajoča v staro železno dobo, je vključevala intenzivno uporabo lesa v rudnikih, še posebej za podporo in zaščito rovov. Rudnik Sitarjevec je bil znova odprt za turizem leta 2017, in v letu 2021 so odprli glavni rov. Les ostaja ključen material v rudnikih, čeprav so ga v preteklosti nadomeščali z drugimi materiali. Uporabljeni les je izpostavljen razkroju zaradi visoke vlažnosti in gliv, kot je bela hišna goba. Ta gliva lahko povzroči razgradnjo lesa in je pogosta v vlažnih okoljih rudnikov. Obstoj gliv je pomemben, saj lahko vplivajo na obiskovalce rudnika. Visoka relativna zračna vlažnost (96,6 %) in stalna temperatura (10,1 °C) v rudniku ustvarjata razmere, ki so ugodne za rast gliv, vendar pa relativno nizka temperatura ni omejujoč dejavnik za razgradnjo lesa. Koncentracija glivnih spor v rudniku je visoka in je razložena z razširjenostjo gliv v samem rudniku. Poleg tega smo opazili, da je v lesu veliko anorganskih onesnaževal ter veliko kristalov.
Ključne besede: razkroj, bela hišna goba, težke kovine, kristali, spore
Objavljeno v DiRROS: 22.07.2024; Ogledov: 164; Prenosov: 94
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5. Benthic sediment as stores and sources of bacteria and viruses in streams : a comparison of baseflow vs. stormflow longitudinal transport and residence timesJennifer D Drummond, José Gonçalves, Tomás Aquino, Susan A. Bernal, Esperança Gacia, Ion Gutiérrez-Aguirre, Valentina Turk, Maja Ravnikar, Stefan Krause, Eugenia Martí Roca, 2023, izvirni znanstveni članek Povzetek: The presence of bacteria and viruses in freshwater represents a global health risk. The substantial spatial and temporal variability of microbes leads to difficulties in quantifying the risks associated with their presence in freshwater. Fine particles, including bacteria and viruses are transported and accumulated into shallow streambed (i.e., benthic) sediment, delaying the downstream transmission during baseflow conditions but contributing to their resuspension and transport downstream during stormflow events. Direct measurements of pathogen accumulation in benthic sediments are rare. Until now, the dynamic role of benthic sediment as both a store and source of microbes, has not been quantified. In this study, we analyze microbial abundance in benthic sediment along a 1 km reach of an intermittent Mediterranean stream receiving inputs from the effluent of a wastewater treatment plant, a known point source of microbes in streams. We sampled benthic sediment during a summer drought when the wastewater effluent constituted 100 % of the stream flow, and thus, large accumulation and persistence of pathogens along the streambed was expected. We measured the abundance of total bacteria, Escherichia coli (as a fecal indicator), and presence of enteric rotavirus (RoV) and norovirus (NoV). The abundance of E. coli, based on qPCR detection, was high (4.99∙102 gc /cm2) along the first 100 m downstream of the wastewater effluent input and in general decreased with distance from the source, with presence of RoV and NoV along the study reach. A particle tracking model was applied, that uses stream water velocity as an input, and accounts for microbial exchange into, immobilization, degradation, and resuspension out of benthic sediment during baseflow and stormflow. Rates of exchange into benthic sediment were 3 orders of magnitude higher during stormflow, but residence times were proportionately lower, resulting in increased longitudinal connectivity from up to downstream during stormflow. Model simulations demonstrated mechanistically how the rates of exchange into and out of the benthic sediment resulted in benthic sediment to act as a store during baseflow and a source during stormflow.
Ključne besede: E. coli, norovirus, rotavirus, benthic sediment, pathogen transport, microbial risk
Objavljeno v DiRROS: 12.07.2024; Ogledov: 141; Prenosov: 125
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6. Lastnosti lesa iz rudnika SitarjevecMiha Humar, Boštjan Lesar, Davor Kržišnik, Andreja Pondelak, Andrijana Sever Škapin, Angela Balzano, José Gonçalves, 2024, izvirni znanstveni članek Povzetek: Rudarska tradicija v Litiji, segajoča v staro železno dobo, je vključevala intenzivno uporabo lesa v rudnikih, še posebej za podporo in zaščito rovov. Rudnik Sitarjevec je bil znova odprt za turizem leta 2017, in v letu 2021 so odprli glavni rov. Les ostaja ključen material v rudnikih, čeprav so ga v preteklosti nadomeščali z drugimi materiali. Uporabljeni les je izpostavljen razkroju zaradi visoke vlažnosti in gliv, kot je bela hišna goba. Ta gliva lahko povzroči razgradnjo lesa in je pogosta v vlažnih okoljih rudnikov. Obstoj gliv je pomemben, saj lahko vplivajo na obiskovalce rudnika. Visoka relativna zračna vlažnost (96,6 %) in stalna temperatura (10,1 °C) v rudniku ustvarjata razmere, ki so ugodne za rast gliv, vendar pa relativno nizka temperatura ni omejujoč dejavnik za razgradnjo lesa. Koncentracija glivnih spor v rudniku je visoka in je razložena z razširjenostjo gliv v samem rudniku. Poleg tega smo opazili, da je v lesu veliko anorganskih onesnaževal ter veliko kristalov.
Ključne besede: razkroj, bela hišna goba, težke kovine, kristali, spore
Objavljeno v DiRROS: 21.06.2024; Ogledov: 388; Prenosov: 134
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