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1.
Evaluation of the rbcL marker for metabarcoding of marine diatoms and inference of population structure of selected genera
Timotej Turk Dermastia, Ivano Vascotto, Janja Francé, David Stanković, Patricija Mozetič, 2023, izvirni znanstveni članek

Povzetek: Diatoms are one of the most important phytoplankton groups in the world’s oceans. There are responsible for up to 40% of the photosynthetic activity in the Ocean, and they play an important role in the silicon and carbon cycles by decoupling carbon from atmospheric interactions through sinking and export. These processes are strongly influenced by the taxonomic composition of diatom assemblages. Traditionally, these have been assessed using microscopy, which in some cases is not reliable or reproducible. Next-generation sequencing enabled us to study diversity in a high-throughput manner and uncover new distribution patterns and diversity. However, phylogenetic markers used for this purpose, such as various 18S rDNA regions, are often insufficient because they cannot distinguish between some taxa. In this work, we demonstrate the performance of the chloroplast-encoded rbcL marker for metabarcoding marine diatoms compared to microscopy and 18S-V9 metabarcoding using a series of monthly samples from the Gulf of Trieste (GoT), northern Adriatic Sea. We demonstrate that rbcL is able to detect more taxa compared to 18S-V9 metabarcoding or microscopy, while the overall structure of the diatom assemblage was comparable to the other two methods with some variations, that were taxon dependent. In total, 6 new genera and 22 new diatom species for the study region were identified. We were able to spot misidentification of genera obtained with microscopy such as Pseudo-nitzschia galaxiae, which was mistaken for Cylindrotheca closterium, as well as genera that were completely overlooked, such as Minidiscus and several genera from the Cymatosiraceae family. Furthermore, on the example of two well-studied genera in the region, namely Chaetoceros and particularly Pseudo-nitzschia, we show how the rbcL method can be used to infer even deeper phylogenetic and ecologically significant differences at the species population level. Despite a very thorough community analysis obtained by rbcL the incompleteness of reference databases was still evident, and we shed light on possible improvements. Our work has further implications for studies dealing with taxa distribution and population structure, as well as carbon and silica flux models and networks.
Ključne besede: rbcL, metabarcoding, monitoring, diatoms, population genetics, Pseudo-nitzschia, Adriatic
Objavljeno v DiRROS: 12.07.2024; Ogledov: 4; Prenosov: 2
.pdf Celotno besedilo (13,98 MB)
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2.
Content of trace elements and human health risk assessment via consumption of commercially important fishes from Montenegrin coast
Neda Bošković, Danijela Joksimović, Oliver Bajt, 2023, izvirni znanstveni članek

Povzetek: Muscle tissues of Mullus barbatus and Merluccius merluccius were analyzed for the presence of selected trace elements (As, Hg, Cd, and Pb) to determine the value of the daily intake of trace elements from fish consumption and to assess the risk to human health. The mean concentrations of As in the muscle tissue of M. barbatus and M. merluccius for the entire period were 19.689 mg/kg wet weight (ww) and 8.356 mg/kg ww, Hg 0.497 mg/kg ww and 0.153 mg/kg ww, and Pb 0.031 mg/kg ww and 0.025 mg/kg ww, respectively. The concentrations of Cd in all fish sampled were below the detection limit (<0.02 mg/kg ww). The evaluation of the potential health risk assessments based on the target hazard quotient (THQ) and estimated daily intake (EDI) indicated that the intake of As in both fish species and Hg for M. barbatus could pose an appreciable risk to human health. The calculated hazard index (HI) was higher than 1 for both fish species. The continuous monitoring of trace elements’ concentrations in fish is strongly recommended, as the results demonstrate potential health risks due to the presence of As and Hg.
Ključne besede: trace elements, Mullus barbatus, Merluccius merluccius, human health risk assessment, Montenegro, Adriatic Sea, hydrobiology
Objavljeno v DiRROS: 12.07.2024; Ogledov: 6; Prenosov: 1
.pdf Celotno besedilo (1,26 MB)
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Phytoplankton assemblage over a 14-year period in the Adriatic Sea : patterns and trends
Sanda Skejić, Blanka Milić Roje, Frano Matić, Jasna Arapov, Janja Francé, Mia Bužančić, Ana Bakrač, Maja Straka, Živana Ninčević Gladan, 2024, izvirni znanstveni članek

Povzetek: Considering the role of phytoplankton in the functioning and health of marine systems, it is important to characterize its responses to a changing environment. The central Adriatic Sea, as a generally oligotrophic area, is a suitable environment to distinguish between regular fluctuations in phytoplankton and those caused by anthropogenic or climatic influences. This study provides a long-term perspective of phytoplankton assemblage in the central eastern Adriatic Sea, with 14 years of continuous time series data collected at two coastal and two offshore stations. The predominant phytoplankton groups were diatoms and phytoflagellates, but their proportion varied depending on the vicinity of the coast, as evidenced also by the distribution of chlorophyll a. In the coastal environment, the phytoplankton biomass was substantially higher, with a higher proportion of microphytoplankton, while small phytoplankton accounted for the majority of biomass in the offshore area. In addition, a decreasing trend in diatom abundance was observed in the coastal waters, while such trend was not so evident in the offshore area. Using a neural gas algorithm, five clusters were defined based on the contribution of the major groups. The observed increase in diversity, especially in dinoflagellates, which outnumber diatom taxa, could be a possible adaptation of dinoflagellates to the increased natural solar radiation in summer and the increased sea surface temperature.
Ključne besede: phytoplankton community, long-term data, diversity, chlorophyll a, neural gas analysis, solar radiation, Adriatic Sea
Objavljeno v DiRROS: 11.07.2024; Ogledov: 13; Prenosov: 5
.pdf Celotno besedilo (2,46 MB)
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5.
Five-year monitoring of the ecological status of the Cymodocea nodosa meadow near the Port of Koper
Martina Orlando-Bonaca, Diego Bonaca, Romina Bonaca, Erik Lipej, Domen Trkov, 2024, izvirni znanstveni članek

Povzetek: Seagrass meadows are among the most productive ecosystems in marine environments worldwide and are often considered to symbolise near-pristine conditions on sedimentary bottoms, but their condition is associated to various types of anthropogenic stressors. In the Mediterranean Sea, Cymodocea nodosa is considered an effective indicator of environmental change, due to its universal distribution, its sensitivity to various natural and anthropogenic pressures, and the measurability of the species’ responses to these impacts. The aim of this study is to present the improvement of the ecological status of the C. nodosa meadow near the port of Koper over a period of five years and to compare these results with the reference site in the northern Adriatic Sea.
Ključne besede: Cymodocea nodosa, MediSkew index, Port of Koper, status assessment, northern Adriatic Sea
Objavljeno v DiRROS: 09.07.2024; Ogledov: 48; Prenosov: 16
.pdf Celotno besedilo (1,49 MB)
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6.
Okadaic acid as a major problem for the seafood safety (Mytilus galloprovincialis) and the dynamics of toxic phytoplankton in the Slovenian coastal sea (Gulf of Trieste, Adriatic Sea)
Urška Henigman, Patricija Mozetič, Janja Francé, Tanja Knific, Stanka Grebenc, Jožica Dolenc, Andrej Kirbiš, Majda Biasizzo, 2024, izvirni znanstveni članek

Povzetek: This article presents the first results on shellfish toxicity in the Slovenian sea (Gulf of Trieste, Adriatic Sea) since the analytical methods for the detection of biotoxins (PSP, ASP, DSP and other lipophilic toxins) in bivalve molluscs were included in the national monitoring program in 2013. In addition to toxins, the composition and abundance of toxic phytoplankton and general environmental characteristics of the seawater (surface temperature and salinity) were also monitored. During the 2014–2019 study period, only lipophilic toxins were detected (78 positive tests out of 446 runs), of which okadaic acid (OA) predominated in 97% of cases, while dinophysistoxin-2 and yessotoxins only gave a positive result in one sampling event each. The number of samples that did not comply with the EC Regulation for the OA group was 17 or 3.8% of all tests performed, all of which took place from September to November, while a few positive OA tests were also recorded in December, April, and May. This toxicity pattern was consistent with the occurrence pattern of the five most common DSP-producing dinoflagellates, which was supported by the development of warm and thermohaline stratified waters: Dinophysis caudata, D. fortii, D. sacculus, D. tripos and Phalacroma rotundatum. The strong correlation (r = 0.611, p<0.001) between D. fortii, reaching abundances of up to 950 cells L−1, and OA suggests that D. fortii is the main cause of OA production in Slovenian waters. Strong interannual variations in OA and phytoplankton dynamics, exacerbated by the effects of anthropogenic impacts in this coastal ecosystem, reduce the predictability of toxicity events and require continuous and efficient monitoring. Our results also show that the introduction of the LC-MS/MS method for lipophilic toxins has improved the management of aquaculture activities, which was not as accurate based on mouse bioassays.
Ključne besede: biotoxins, okadaic acid, toxic phytoplankton, LC-MS/MS, toxicity, Adriatic Sea, hydrobiology, marine biology
Objavljeno v DiRROS: 19.06.2024; Ogledov: 111; Prenosov: 55
.pdf Celotno besedilo (1,83 MB)
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7.
Contribution to the knowledge of Gongolaria barbata (Sargassaceae, Fucales) from the Mediterranean : insights into infraspecific diversity
Annalisa Falace, Chiara Manfrin, Giovanni Furnari, Sara D’Ambros Burchio, Alberto Pallavicini, Emmanuelle Patricia Descourvières, Sara Kaleb, Ana Lokovšek, Daniele Grech, Giuseppina Alongi, 2024, izvirni znanstveni članek

Povzetek: Gongolaria barbata (Sargassaceae, Fucales) is a widespread species for which several infraspecific taxa have been described, indicating its polymorphism. This study contributes to the understanding of the molecular, nomenclatural, morphological and ecological aspects of G. barbata in the Mediterranean and sheds light on the infraspecific diversity and its implications for the taxonomy of this species. Molecular analyses were performed using sequencing of the mitochondrial cox1 gene on both haptophytic and pleustophytic forms from different sites in the Adriatic and Tyrrhenian Seas. Vegetative and reproductive morphology was studied on thalli samples from the Adriatic. Our results showed that there are different morphotypes within G. barbata populations related to specific environmental conditions, suggesting infraspecific variation. In contrast, molecular analyses showed no differences between samples, regardless of whether individuals are growing “attached” to a substrate or “unattached”. We also discussed the taxonomic status and nomenclatural issues related to certain infraspecific taxa previously proposed for G. barbata. In particular, the confusion surrounding Cystoseira aurantia is clarified.
Ključne besede: ecotypes, taxonomy, Northern Adriatic, Cystoseira s.l.
Objavljeno v DiRROS: 16.05.2024; Ogledov: 172; Prenosov: 104
.pdf Celotno besedilo (218,75 KB)

8.
Exploring the mesoscale connectivity of phytoplankton periodic assemblages' succession in northern Adriatic pelagic habitats
Ivano Vascotto, Fabrizio Bernardi Aubry, Mauro Bastianini, Patricija Mozetič, Stefania Finotto, Janja Francé, 2024, izvirni znanstveni članek

Povzetek: An appropriate model for phytoplankton distribution patterns is critical for understanding biogeochemical cycles and trophic interactions in the oceans and seas. Because phytoplankton dynamics in coastal waters are more complex due to shallow depth and proximity to land, more accurate models applied to the correct spatial and temporal scales are needed. Our study investigates the role of the atmosphere and hydrosphere in pelagic habitat by modelling phytoplankton assemblages at two Long Term Ecological Research sites in the northern Adriatic Sea using niche-forming environmental variables (wind, temperature, salinity, river discharge, rain, and water column stratification). To study the synchronization between the phytoplankton community and these environmental variables at the two LTER sites, we applied current linear and nonlinear numerical methods for ecological modelling. The aim was to use periodic and/or non-periodic properties of the environmental variables to classify the phytoplankton assemblages at one LTER site (Gulf of Trieste - Slovenia) and then predict them at another LTER site 100 km away (Gulf of Venice - Italy). We found that periodicity played a role in the explanatory and predictive power of the environmental variables and that it was more important than non-periodic events in defining the common structure of the two pelagic habitats. The non-linear classification functions of the neural networks further increased the predictive power of these variables. We observed partial synchronization of communities at the mesoscale and differences between the original and predicted assemblages under similar environmental conditions. We conclude that mesoscale connectivity plays an important role in phytoplankton communities in the northern Adriatic. However, the loss of periodicity of niche-forming variables due to more frequent extreme meteorological and hydrological events could loosen these connections and affect the temporal succession of phytoplankton assemblages.
Ključne besede: phytoplankton, assemblages, Northern Adriatic, phenology, marine biology, hydrobiology
Objavljeno v DiRROS: 16.05.2024; Ogledov: 191; Prenosov: 258
.pdf Celotno besedilo (6,94 MB)
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9.
Heavy metal signature and environmental assessment of nearshore sediments: Port of Koper (Northern Adriatic Sea)
Nastja Rogan Šmuc, Matej Dolenec, Sabina Dolenec, Ana Mladenovič, 2018, izvirni znanstveni članek

Povzetek: Heavy metal abundance and potential environmental risks are reported for surface sediments (n = 21) from the Port of Koper area, Republic of Slovenia. The enrichment factor (EF) indicates minor enrichment in arsenic (As), cadmium (Cd), copper (Cu), molybdenum (Mo), lead (Pb), antimony (Sb), and zinc (Zn), moderately to severely enriched with nickel (Ni). The trace metal chemistries, in the context of sediment quality guidelines (SQG), imply adverse threshold effect concentrations (TEC) and probable effect concentrations (PEC), for Ni only. Sediment sequential leaching experiments demonstrated that the majority of heavy metals were of natural lithogenic origin and low bioavailability. The heavy metals’ potential for “Risk Assessment Code” values exhibited no or low anthropogenic environmental burden, with the exception of Mo.
Ključne besede: port sediments, heavy metals, chemical speciation, risk assessment, Northem Adriatic Sea
Objavljeno v DiRROS: 12.12.2023; Ogledov: 286; Prenosov: 149
.pdf Celotno besedilo (6,88 MB)
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10.
Late-Quaternary evolution of the semi-confined alluvial megafan of Isonzo River (Northern Adriatic): where the fluvial system of the Southern Alps meets the karst
Livio Ronchi, Alessandro Fontana, Ana Novak, Annamaria Correggiari, Sašo Poglajen, 2023, izvirni znanstveni članek

Povzetek: The evolution of alluvial megafans has mainly been investigated in unconfined settings; however, at the boundary of these large depositional systems, the development of fluvial channels can be affected by structural constraints with regional extent. Here we present the study of the eastern sector of the megafan of Isonzo River, in the Gulf of Trieste, where this system fed through the southern Alps is constrained by the Karst and Istria cliffs. Although this area is now submerged under the northern Adriatic Sea, stratigraphy from seismo-acoustic profiles, drill cores and multi-beam bathymetry allows us to reconstruct the paleochannel system of the Isonzo River in detail, which was likely active within the period of 21–17.5 ka cal BP, at the end of LGM. This was reconstructed for over 50 km and currently represents the longest abandoned fluvial channel in the Mediterranean seabed. The occurrence of the mountain fringe and competition with nearby alluvial systems forced the paleochannel to follow the present coastline and conditioned the slope of its thalweg to decrease almost to null, resulting the transformation from the megafan to the undifferentiated alluvial plain.
Ključne besede: marine geology, CHIRP, stratigraphy, bathymetry, last glacial maximum, adriatic sea
Objavljeno v DiRROS: 31.05.2023; Ogledov: 416; Prenosov: 134
.pdf Celotno besedilo (8,68 MB)

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