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Title:Toward learning the principles of plant gene regulation
Authors:ID Zrimec, Jan (Author)
ID Zelezniak, Aleksej (Author)
ID Gruden, Kristina (Author)
Files:URL URL - Source URL, visit https://doi.org/10.1016/j.tplants.2022.08.010
 
.pdf PDF - Presentation file, download (403,50 KB)
MD5: 27642738E5CF5970A22FF390D0382930
 
Language:English
Typology:1.03 - Other scientific articles
Organization:Logo NIB - National Institute of Biology
Abstract:Advanced machine learning (ML) algorithms produce highly accurate models of gene expression, uncovering novel regulatory features in nucleotide sequences involving multiple cis-regulatory regions across whole genes and structural properties. These broaden our understanding of gene regulation and point to new principles to test and adopt in the field of plant science.
Keywords:gene expression prediction, bioinformatics, deep learning, regulatory genomics
Publication status:Published
Publication version:Version of Record
Publication date:01.12.2022
Year of publishing:2022
Number of pages:str. 1206-1208
Numbering:Vol. 27, iss. 12
PID:20.500.12556/DiRROS-20157 New window
UDC:60
ISSN on article:1360-1385
DOI:10.1016/j.tplants.2022.08.010 New window
COBISS.SI-ID:123482371 New window
Publication date in DiRROS:06.08.2024
Views:490
Downloads:215
Metadata:XML DC-XML DC-RDF
:
ZRIMEC, Jan, ZELEZNIAK, Aleksej and GRUDEN, Kristina, 2022, Toward learning the principles of plant gene regulation. Trends in Plant Science [online]. 2022. Vol. 27, no. 12, p. 1206–1208. [Accessed 21 April 2025]. DOI 10.1016/j.tplants.2022.08.010. Retrieved from: https://dirros.openscience.si/IzpisGradiva.php?lang=eng&id=20157
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Record is a part of a journal

Title:Trends in Plant Science
Shortened title:Trends plant sci.
Publisher:Elsevier Science
ISSN:1360-1385
COBISS.SI-ID:3735079 New window

Document is financed by a project

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J2-3060-2021
Name:Sistemsko biološko podprto globoko učenje za interpretacijo načel regulacije rasti in obrambe rastlin
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P4-0165-2022
Name:Biotehnologija in sistemska biologija rastlin
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:11013-9/2021-2
Funder:Other - Other funder or multiple funders
Funding programme:Swedish Research council (Vetenskapsrådet)
Project number:2019-05356
Funder:Other - Other funder or multiple funders
Name:SciLifeLab

Licences

License:CC BY-NC-ND 4.0, Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
Link:http://creativecommons.org/licenses/by-nc-nd/4.0/
Description:The most restrictive Creative Commons license. This only allows people to download and share the work for no commercial gain and for no other purposes.

Secondary language

Language:Slovenian
Keywords:napovedovanje izrazanja genov, bioinformatika, globoko ucenje, regulatorna genomika


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