11. Application of a meshless space-time adaptive approach to phase-field modelling of polycrystalline solidificationTadej Dobravec, Boštjan Mavrič, Božidar Šarler, 2023, published scientific conference contribution Abstract: We have developed a 2-D numerical meshless adaptive approach for phase-field modelling of dendritic solidification. The quadtree-based approach decomposes the computational domain into quadtree sub-domains of different sizes. The algorithm generates uniformly-distributed computational nodes in each quadtree sub-domain. We apply the meshless radial basis function generated finite difference method and the forward Euler scheme to discretise governing equations in each computational node. The fixed ratio between the characteristic size and the node spacing of a quadtree sub-domain ensures space adaptivity. The adaptive time-stepping accelerates the calculations further. In the framework of previous research studies, we used the approach to solve quantitative phase-field models for single dendrite growth in pure melts and dilute binary alloys. In the present study, we upgrade the solution procedure for the modelling growth of multiple differently oriented dendrites. Along with the space-time adaptive approach, we apply non-linear preconditioning of the phase-field equation to increase computational efficiency. We investigate a novel numerical approach's accuracy and computational efficiency by simulating the equiaxed dendrite growth from a dilute binary alloy. Keywords: dendritic growth, phase-field method, meshless methods, polycrystalline solidification Published in DiRROS: 21.03.2024; Views: 368; Downloads: 144
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13. Radial increment of beech (Fagus sylvatica L.) Is under a strong impact of climate in the continental biogeographical region of CroatiaTom Levanič, Damir Ugarković, Ivan Seletković, Mladen Ognjenović, Mia Marušić, Robert Bogdanić, Nenad Potočić, 2023, original scientific article Abstract: European beech (Fagus sylvatica L.) is an important component of forests in the alpine and continental biogeographical regions of Croatia. This study aimed to (1) analyze the long-term response of beech to climate, (2) identify potentially critical climatic conditions that could negatively affect the radial increment (RI) and vitality of beech, and (3) evaluate differences in the response of beech between the two biogeographical regions in Croatia. We used the 16 × 16 km Croatian ICP Forests Level 1 network. On a total of 25 plots, we cored between 5 and 24 trees for dendrochronological analysis. Tree-ring widths (TRW) were measured and standardized using cubic spline. TRW chronologies for the two regions were calculated and correlated to the temperature and precipitation data and Standardized Precipitation and Evapotranspiration Index (SPEI) using bootstrapped correlations. Continental region precipitation from April to August and alpine region precipitation from June to August were significantly important for RI. Temperature was less important for RI than precipitation in both regions, but the importance of the negative impact of above-average temperatures in the continental region and the positive impact of above-average precipitation in the alpine region has increased over the last two decades. A comparison with the 3-month SPEI confirmed the significant influence of high temperatures and the lack of precipitation in August on the RI of beech trees in both regions. Keywords: climate change, tree growth, forest productivity, drought, European beech Published in DiRROS: 28.06.2023; Views: 675; Downloads: 367
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14. Growth response of European beech (Fagus sylvatica L.) and Silver Fir (Abies alba Mill.) to climate factors along the Carpathian massivePia Caroline Adamič, Tom Levanič, Mihail Hanzu, Matjaž Čater, 2023, original scientific article Abstract: European forests are becoming increasingly threatened by climate change and more frequent droughts. The likely responses of species to climate change will vary, affecting their competitiveness, their existence, and consequently, forest management decisions and measures. We determined the influence of climate on the radial growth of European beech and silver fir along the Carpathians to find similarities between the two species and the main differences. Along the Carpathian Mountains, seven sites with mature fir–beech stands above 800 m above sea level were selected and analyzed. Our study confirmed different responses depending on species and location. A more pronounced response of tree growth to climate was observed on the eastern side of the Carpathians, while it was less expressed or even absent on the southern sites. Both beech and fir show better radial growth with higher precipitation in July and slower growth with higher average and maximum temperatures in June of the current year. Fir demonstrates a positive correlation between radial growth and temperature in winter, while beech demonstrates a negative correlation between radial growth and temperature in summer. In the 1951–1960 decade, the average tree ring widths in fir and beech were largest at the southern sites compared to the other sites, but since 2011, the southern sites have had the lowest increase while northern sites have had the largest. Both species respond differently to climate and are likely to follow different competitive paths in the future. Keywords: climate change, dendrochronology, radial growth response, meteorological parameters Published in DiRROS: 28.06.2023; Views: 725; Downloads: 465
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15. Engineered combinatorial cell device for wound healing and bone regenerationLucija Kadunc, Duško Lainšček, Rok Gašperšič, Petra Sušjan, Uroš Kovačič, Miha Butinar, Boris Turk, Roman Jerala, Iva Hafner Bratkovič, 2023, original scientific article Abstract: Growth factors are the key regulators that promote tissue regeneration and healing processes. While the effects of individual growth factors are well documented, a combination of multiple secreted growth factors underlies stem cell–mediated regeneration. To avoid the potential dangers and laborintensive individual approach of stem cell therapy while maintaining their regeneration-promoting effects based on multiple secreted growth factors, we engineered a “mix-and-match” combinatorial platform based on a library of cell lines producing growth factors. Treatment with a combination of growth factors secreted by engineered mammalian cells was more efficient than with individual growth factors or even stem cell–conditioned medium in a gap closure assay. Furthermore, we implemented in a mouse model a device for allogenic cell therapy for an in situ production of growth factors, where it improved cutaneous wound healing. Augmented bone regeneration was achieved on calvarial bone defects in rats treated with a cell device secreting IGF, FGF, PDGF, TGF-β, and VEGF. In both in vivo models, the systemic concentration of secreted factors was negligible, demonstrating the local effect of the regeneration device. Finally, we introduced a genetic switch that enables temporal control over combinations of trophic factors released at different stages of regeneration mimicking the maturation of natural wound healing to improve therapy and prevent scar formation. Keywords: wound healing, bone regeneration, growth factors Published in DiRROS: 01.06.2023; Views: 718; Downloads: 290
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16. Tree and stand growth differ among soil classes in semi-natural forests in central EuropeAndrej Bončina, Matija Klopčič, Vasilije Trifković, Andrej Ficko, Primož Simončič, 2023, original scientific article Abstract: We determined the size of differences in stand and tree growth in semi-natural forests with respect to 16 reference soil groups. The forest area of Slovenia (11.8 thousand km2) was used as the study area, and reference soil units were derived from the national soil map at a 1:25,000 scale consisting of 10,781 polygons with an average size of 117.95 ha. Stand growth was defined as periodic stand basal area increment, while the growth of Norway spruce, silver fir, Scots pine, European beech and sessile oak trees was estimated by the periodic diameter increment of 238,349 dominant trees on 67,061 permanent sampling plots. A linear fixed-effects model and linear mixed-effect models were used for studying stand and tree growth in different site, stand and tree conditions. The soil unit was the dummy variable with Dystric Cambisols set as the reference category. Soil contributed 4.3 % to the explained variability of basal area increment and 4–27 % to the explained variability of the diameter increment of the five tree species. Soil was a stronger driver of stand and tree growth than climate or topography. Stand and tree species production rate on soil units was in the interval of −28 % to +5 % and −47 % to +14 % of that on the reference soil unit, respectively. Stand growth was the highest on Eutric Gleysols and the lowest on Histosols, and tree species generally exhibited the highest and the lowest growth rates on different soil units. We suggest that soil should be considered in growth models and studied interrelatedly with climatic, site and stand variables. Keywords: reference soil groups, FAO soil unit, natural forest, stand growth, tree growth Published in DiRROS: 29.12.2022; Views: 742; Downloads: 413
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17. Real-world testing practices, treatment patterns and clinical outcomes in patients from Central Eastern Europe with EGFR-mutated advanced non-small cell lung cancer : a retrospective chart review study (REFLECT)Urška Janžič, Nina Turnšek, Mircea Dediu, Ivan Shterev Donev, Roxana Lupu, Gabriela Teodorescu, Tudor Ciuleanu, Adam Płużański, 2022, original scientific article Abstract: The targeted therapy with tyrosine kinase inhibitors (TKIs) against the epidermal growth factor receptor mutation (EGFRm) in advanced non-small cell lung cancer (NSCLC) changed the treatment paradigm. REFLECT study (NCT04031898) explored EGFR/T790M testing and treatment patterns in EGFRm NSCLC patients receiving first- or second-generation (1G/2G) EGFR TKIs as front-line (1L) in eight countries. Pooled data from Central Eastern Europe (CEE) countries from this study (Bulgaria, Poland, Romania, Slovenia) are presented here. This physician-led chart review study was conducted in patients with confirmed-EGFRm NSCLC initiating 1L 1G/2G EGFR TKIs between 2015–2018. The CEE cohort included 389 patients receiving 1L erlotinib (37%), afatinib (34%), and gefitinib (29%). Overall, 320 (82%) patients discontinued 1L, and 298 (77%) progression events were registered. Median progression free survival on 1L TKIs was 14.0 (95% CI: 12.6–15.6) months. Median overall survival from 1L start was 26.6 (95% CI: 24.1–29.0) months. Attrition rate between 1L and next line was 30%. Among patients with 1L progression, 200 (67%) were tested for T790M and 58% were positive. This first CEE analysis of treatments and outcomes in EGFRm NSCLC patients highlights the importance of using the most efficacious therapies currently available in 1L to reduce attrition and improve patient outcomes. Keywords: lung neoplasms, non-small cell lung carcinoma, Eastern Europe, real-world study, REFLECT study, epidermal growth factor receptor, lung cancer Published in DiRROS: 09.09.2022; Views: 722; Downloads: 298
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18. Influence of housing conditions on reliability of immunocastration and consequences for growth performance of male pigsKevin Kress, Ulrike Weiler, Sonja Schmucker, Marjeta Čandek-Potokar, Milka Vrecl, Gregor Fazarinc, Martin Škrlep, Nina Batorek Lukač, Volker Stefanski, 2020, original scientific article Abstract: Immunocastration is a sustainable alternative to piglet castration but faces limited market acceptance. The phenomenon of non-responders has not to date been examined in detail, but adverse and stressful housing conditions (e.g., mixing of groups) might impair the success of vaccinations. Therefore, we evaluated the influence of housing conditions on the immune response after two Improvac® vaccinations at an age of 12 and 22 weeks, respectively. Boars, immunocastrates and barrows (n = 48 each) were assigned to three different housing conditions (n = 36 enriched, n = 36 standard n = 72 repeated social mixing). Immune response was quantified by measuring GnRH-binding and its consequences for testosterone concentrations, development of the genital tract and boar taint. Growth performance was evaluated via average daily gain (ADG). GnRH-binding and testosterone levels revealed that immunocastration reliably suppressed testicular functions after the 2nd vaccination. Housing conditions did not modify testicular function but influenced ADG as animals under mixing grew slower than those under enriched conditions. Gonadal status had only a slight impact on ADG except in immunocastrates, which showed a temporarily higher ADG after the 2nd vaccination. The results show that immunocastration is a reliable procedure under different housing conditions and competitive in terms of growth performance. Keywords: immunocastration, vaccination, Improvac, non-responder, immune response, housing conditions, surgical castration, boar taint, growth performance, genital tract Published in DiRROS: 06.09.2022; Views: 896; Downloads: 295
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19. Early-warning signals of individual tree mortality based on annual radial growthMaxime Cailleret, Vasilis Dakos, Steven Jansen, Elisabeth M.R. Robert, Tuomas Aakala, Mariano M. Amoroso, Joe A. Antos, Christof Bigler, Harald Bugmann, Marco Caccianaga, Katarina Čufar, Tom Levanič, 2019, original scientific article Abstract: Tree mortality is a key driver of forest dynamics and its occurrence is projected to increase in the future due to climate change. Despite recent advances in our understanding of the physiological mechanisms leading to death, we still lack robust indicators of mortality risk that could be applied at the individual tree scale. Here, we build on a previous contribution exploring the differences in growth level between trees that died and survived a given mortality event to assess whether changes in temporal autocorrelation, variance, and synchrony in time-series of annual radial growth data can be used as early warning signals of mortality risk. Taking advantage of a unique global ring-width database of 3065 dead trees and 4389 living trees growing together at 198 sites (belonging to 36 gymnosperm and angiosperm species), we analyzed temporal changes in autocorrelation, variance, and synchrony before tree death (diachronic analysis), and also compared these metrics between trees that died and trees that survived a given mortality event (synchronic analysis). Changes in autocorrelation were a poor indicator of mortality risk. However, we found a gradual increase in interannual growth variability and a decrease in growth synchrony in the last %20 years before mortality of gymnosperms, irrespective of the cause of mortality. These changes could be associated with drought-induced alterations in carbon economy and allocation patterns. In angiosperms, we did not find any consistent changes in any metric. Such lack of any signal might be explained by the relatively high capacity of angiosperms to recover after a stress-induced growth decline. Our analysis provides a robust method for estimating early-warning signals of tree mortality based on annual growth data. In addition to the frequently reported decrease in growth rates, an increase in inter-annual growth variability and a decrease in growth synchrony may be powerful predictors of gymnosperm mortality risk, but not necessarily so for angiosperms. Keywords: tree mortality, ring-width, forest, growth, resilience indicators, drought, biotic agents, variance Published in DiRROS: 20.07.2022; Views: 885; Downloads: 541
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