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Query: "author" (Ogris Nikica) .

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Poročilo o preskusu št.: LVG 2023-081 : vzorec št. 2023/00509
Nikica Ogris, 2023, expertise, arbitration decision

Keywords: varstvo gozdov, morfološke analize, trepetlika, Populus tremula, sušni stres, Cytospora nivea, bolezen vej
Published in DiRROS: 31.08.2023; Views: 234; Downloads: 84
.pdf Full text (1,14 MB)

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The potential global distribution of an emerging forest pathogen, Lecanosticta acicola, under a changing climate
Nikica Ogris, Rein Drenkhan, Petr Vahalík, Thomas L. Cech, Martin Mullett, Katherine Tubby, 2023, original scientific article

Abstract: Brown spot needle blight (BSNB), caused by Lecanosticta acicola (Thüm.) Syd., is an emerging forest disease of Pinus species originating from North America and introduced to Europe and Asia. Severity and spread of the disease has increased in the last two decades in North America and Europe as a response to climate change. No modeling work on spread, severity, climatic suitability, or potential distribution has been done for this important emerging pathogen. This study utilizes a global dataset of 2,970 independent observations of L. acicola presence and absence from the geodatabase, together with Pinus spp. distribution data and 44 independent climatic and environmental variables. The objectives were to (1) identify which bioclimatic and environmental variables are most influential in the distribution of L. acicola; (2) compare four modeling approaches to determine which modeling method best fits the data; (3) examine the realized distribution of the pathogen under climatic conditions in the reference period (1971–2000); and (4) predict the potential future global distribution of the pathogen under various climate change scenarios. These objectives were achieved using a species distribution modeling. Four modeling approaches were tested: regression-based model, individual classification trees, bagging with three different base learners, and random forest. Altogether, eight models were developed. An ensemble of the three best models was used to make predictions for the potential distribution of L. acicola: bagging with random tree, bagging with logistic model trees, and random forest. Performance of the model ensemble was very good, with high precision (0.87) and very high AUC (0.94). The potential distribution of L. acicola was computed for five global climate models (GCM) and three combined pathways of Shared Socioeconomic Pathway (SSP) and Representative Concentration Pathway (SSP-RCP): SSP1-RCP2.6, SSP2-RCP4.5, and SSP5-RCP8.5. The results of the five GCMs were averaged on combined SSP-RCP (median) per 30-year period. Eight of 44 studied factors determined as most important in explaining L. acicola distribution were included in the models: mean diurnal temperature range, mean temperature of wettest quarter, precipitation of warmest quarter, precipitation seasonality, moisture in upper portion of soil column of wettest quarter, surface downwelling longwave radiation of driest quarter, surface downwelling shortwave radiation of warmest quarter and elevation. The actual distribution of L. acicola in the reference period 1971–2000 covered 5.9% of Pinus spp. area globally. However, the model ensemble predicted potential distribution of L. acicola to cover an average of 58.2% of Pinus species global cover in the reference period. Different climate change scenarios (five GCMs, three SSP-RCPs) showed a positive trend in possible range expansion of L. acicola for the period 1971–2100. The average model predictions toward the end of the century showed the potential distribution of L. acicola rising to 62.2, 61.9, 60.3% of Pinus spp. area for SSP1-RCP2.6, SSP2-RCP4.5, SSP5-RCP8.5, respectively. However, the 95% confidence interval encompassed 35.7–82.3% of global Pinus spp. area in the period 1971–2000 and 33.6–85.8% in the period 2071–2100. It was found that SSP-RCPs had a little effect on variability of BSNB potential distribution (60.3–62.2% in the period 2071–2100 for medium prediction). In contrast, GCMs had vast impact on the potential distribution of L. acicola (33.6–85.8% of global pines area). The maps of potential distribution of BSNB will assist forest managers in considering the risk of BSNB. The results will allow practitioners and policymakers to focus surveillance methods and implement appropriate management plans.
Keywords: brown spot needle blight, BSNB, pines, species distribution model, climate change, biosecurity
Published in DiRROS: 02.08.2023; Views: 327; Downloads: 207
.pdf Full text (11,59 MB)
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Diversity of phytophthora species involved in new diseases of mountain vegetation in Europe with the description of phytophthora pseudogregata sp. nov.
Carlo Bregant, Giovanni Rossetto, Letizia Meli, Nicolò Sasso, Lucio Montecchio, Ana Brglez, Barbara Piškur, Nikica Ogris, Lucia Maddau, Benedetto Teodoro Linaldeddu, 2023, original scientific article

Abstract: New and emerging Phytophthora-related diseases in small trees, shrubs and herbaceous plants typical of subalpine vegetation have recently been observed in Italy and Slovenia. Diseased plants showed a complex symptomatology including foliar necrosis, fruit rot, shoot blight and branch bleeding cankers. Since little information is available about the aetiology of these aerial Phytophthora diseases, from 2019 to 2022, field surveys were conducted in 54 sites to define the occurrence, distribution and impact of the Phytophthora species on mountain vegetation. A total of 360 Phytophthora isolates were obtained from 397 samples collected from 33 herbaceous and woody host species. Based on phylogenetic analysis and morphometric data, 17 Phytophthora species were identified: P. pseudosyringae (201 isolates), P. plurivora (54), P. gonapodyides (21), P. ilicis (20), P. alpina (17), P. acerina (11), P. cactorum (7), P. pseudocryptogea (6), P. cambivora (5), P. idaei (4), P. psychrophila (3), P. bilorbang (2), P. chlamydospora (2), P. hedraiandra (1), P. kelmanii (1), P. rosacearum (1) and P. syringae (1). In addition, three isolates of a new putative Phytophthora species obtained from Alnus viridis, Juniperus communis and Rhododendron ferrugineum are described here as Phytophthora pseudogregata sp. nov. Overall, the results highlighted an unexpectedly high diversity of Phytophthora species in mountain areas, with many species able to cause aerial infections due to the production of caducous sporangia.
Keywords: alpine regions, emerging disease, oomycetes, foliar necrosis, ITS clade 6, phylogeny
Published in DiRROS: 01.08.2023; Views: 302; Downloads: 221
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