1. Digital PCR for the characterization of reference materialsMegan H. Cleveland, Hua-Jun He, Mojca Milavec, Young-Kyung Bae, Peter M. Vallone, Jim F. Huggett, 2024, review article Abstract: Well-characterized reference materials support harmonization and accuracy when conducting nucleic acid-based tests (such as qPCR); digital PCR (dPCR) can measure the absolute concentration of a specific nucleic acid sequence in a background of non-target sequences, making it ideal for the characterization of nucleic acid-based reference materials. National Metrology Institutes are increasingly using dPCR to characterize and certify their reference materials, as it offers several advantages over indirect methods, such as UV-spectroscopy. While dPCR is gaining widespread adoption, it requires optimization and has certain limitations and considerations that users should be aware of when characterizing reference materials. This review highlights the technical considerations of dPCR, as well as its role when developing and characterizing nucleic acid-based reference materials.
Keywords: digital PCR, dPCR, reference materials, UV-spectroscopy
Published in DiRROS: 03.06.2024; Views: 97; Downloads: 41
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3. Exploration of macromolecular phenotype of human skeletal muscle in diabetes using infrared spectroscopyBarbara Zupančič, Chiedozie Kenneth Ugwoke, Mohamed Elwy Abdelmonaem, Armin Alibegović, Erika Cvetko, Jože Grdadolnik, Anja Šerbec, Nejc Umek, 2023, original scientific article Abstract: Introduction: The global burden of diabetes mellitus is escalating, and more efficient investigative strategies are needed for a deeper understanding of underlying pathophysiological mechanisms. The crucial role of skeletal muscle in carbohydrate and lipid metabolism makes it one of the most susceptible tissues to diabetes-related metabolic disorders. In tissue studies, conventional histochemical methods have several technical limitations and have been shown to inadequately characterise the biomolecular phenotype of skeletal muscle to provide a holistic view of the pathologically altered proportions of macromolecular constituents. Materials and methods: In this pilot study, we examined the composition of five different human skeletal muscles from male donors diagnosed with type 2 diabetes and non-diabetic controls. We analysed the lipid, glycogen, and collagen content in the muscles in a traditional manner with histochemical assays using different staining techniques. This served as a reference for comparison with the unconventional analysis of tissue composition using Fourier-transform infrared spectroscopy as an alternative methodological approach. Results: A thorough chemometric post-processing of the infrared spectra using a multi-stage spectral decomposition allowed the simultaneous identification of various compositional details from a vibrational spectrum measured in a single experiment. We obtained multifaceted information about the proportions of the different macromolecular constituents of skeletal muscle, which even allowed us to distinguish protein constituents with different structural properties. The most important methodological steps for a comprehensive insight into muscle composition have thus been set and parameters identified that can be used for the comparison between healthy and diabetic muscles. Conclusion: We have established a methodological framework based on vibrational spectroscopy for the detailed macromolecular analysis of human skeletal muscle that can effectively complement or may even serve as an alternative to histochemical assays. As this is a pilot study with relatively small sample sets, we remain cautious at this stage in drawing definitive conclusions about diabetes-related changes in skeletal muscle composition. However, the main focus and contribution of our work has been to provide an alternative, simple and efficient approach for this purpose. We are confident that we have achieved this goal and have brought our methodology to a level from which it can be successfully transferred to a large-scale study that allows the effects of diabetes on skeletal muscle composition and the interrelationships between the macromolecular tissue alterations due to diabetes to be investigated.
Keywords: diabetes mellitus, skeletal muscle, metabolism, macromulecular composition, infrared spectroscopy, multivariate analysis, histochemical assays
Published in DiRROS: 11.01.2024; Views: 373; Downloads: 115
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4. Raman microspectroscopy of garnets from Sfibulae from the archaeological site Lajh (Slovenia)Saša Kos, Matej Dolenec, Judita Lux, Sabina Dolenec, 2020, original scientific article Abstract: Garnets (19 pieces) of Late Antique S-fibulae from the archaeological site at Lajh-Kranj (Slovenia) were analysed with Raman microspectroscopy to obtain their mineral characteristic, including inclusion assemblage. Most garnets were determined as almandines Type I of pyralspite solid solution series; however, three garnets showed a higher Mg, Mn and Ca contents and were determined as almandines Type II. Most significant Raman bands were determined in the range of 169–173 cm−1 (T(X2+)), 346–352 cm−1 (R(SiO4)), 557–559 cm−1 (ν2), 633–637 cm−1 (ν4), 917–919 cm−1 (ν1), and 1042–1045 cm−1 (ν3). Shifting of certain Raman bands toward higher frequencies was the result of an increase of the Mg content in the garnet composition, which also indicates the presence of pyrope end member in solid garnet solutions. Inclusions of apatite, quartz, mica, magnetite, ilmenite, as well as inclusions with pleochroic or radiation halo and tension fissures (zircon), were found in most of the garnets. Rutile and sillimanite were found only in garnets with the highest pyrope content. Spherical inclusions were also observed in two garnets, which may indicate the presence of melt or gas residues. The determined inclusion assemblage indicates the formation of garnets during medium- to high-grade metamorphism of amphibolite or granulite facies. According to earlier investigations of the garnets from Late Antique jewellery, the investigated garnets are believed to originate from India.
Keywords: garnets, inclusions, Sfibulae, Late Antiquity, provenance, Raman microspectroscopy, XRF spectroscopy
Published in DiRROS: 20.12.2023; Views: 256; Downloads: 188
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5. Corrosion monitoring of steel structure coating degradationBojan Zajec, Mirjam Bajt Leban, Tadeja Kosec, Viljem Kuhar, Andraž Legat, Stanislav Lenart, Karmen Fifer Bizjak, Gavin Kenneth, 2018, original scientific article Abstract: An important aspect regarding the sustainability of steel structures is to ensure the structure is protected from corrosion. A number of surface coatings are availablethat play an important role in protecting these structures. An important part of the management of these structures is reliable and regular inspection along with methods forearly detection of corrosion processes. In this paper, a development and application of sensors for monitoring the steel coating degradation and corrosion damage to steelsubstrate are presented. An encapsulated corrosion kit with integrated EIS sensors and ER probes was developed. To test its efficiency, steel probes were coated withselected coatings in the laboratory and their performance was assessed under various aggressive atmospheres, including; salt, industrial and humid atmosphere.
Keywords: coatings, corrosion, electrochemical impedance spectroscopy, electrical resistance probes, railways, steel structures
Published in DiRROS: 13.12.2023; Views: 246; Downloads: 114
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6. Corrosion behavior of steel in pore solutions extracted from different blended cementsMiha Hren, Tadeja Kosec, Andraž Legat, 2020, original scientific article Abstract: Mortar specimens made from four different types of cement, CEM I, CEM II, CEM III, and CEM IV, were prepared and pore solutions extracted. Three different types of exposure were studied: noncarbonated without chlorides, noncarbonated with chlorides, and carbonated with chlorides. Various electrochemical methods (linear polarization, potentiodynamic polarization measurements) were implemented to characterize the processes of corrosion on steel in these solutions. The type and extent of corrosion products were evaluated by means of various spectroscopic techniques. Specific differences in the type and extent of corrosion damage were determined and compared for each of the extracted pore solutions from the different blended cements. An attempt was made to classify these differences in comparison with the reference cement (CEM I) and in relation to the different types of exposure.
Keywords: corrosion, steel in pore water, blended cements, Raman Spectroscopy
Published in DiRROS: 22.08.2023; Views: 344; Downloads: 167
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7. Characterizing steel corrosion in different alkali-activated mortarsNina Gartner, Miha Hren, Tadeja Kosec, Andraž Legat, 2021, original scientific article Abstract: Alkali-activated materials (AAMs) present a promising potential alternative to ordinary Portland cement (OPC). The service life of reinforced concrete structures depends greatly on the corrosion resistance of the steel used for reinforcement. Due to the wide range and diverse properties of AAMs, the corrosion processes of steel in these materials is still relatively unknown. Three different alkali-activated mortar mixes, based on fly ash, slag, or metakaolin, were prepared for this research. An ordinary carbon-steel reinforcing bar was installed in each of the mortar mixes. In order to study the corrosion properties of steel in the selected mortars, the specimens were exposed to a saline solution in wet/dry cycles for 17 weeks, and periodic electrochemical impedance spectroscopy (EIS) measurements were performed. The propagation of corrosion damage on the embedded steel bars was followed using X-ray computed microtomography (XCT). Periodic EIS measurements of the AAMs showed different impedance response in individual AAMs. Moreover, these impedance responses also changed over the time of exposure. Interpretation of the results was based on visual and numerical analysis of the corrosion damages obtained by XCT, which confirmed corrosion damage of varying type and extent on steel bars embedded in the tested AAMs.
Keywords: corrosion, alkali-activated mortars, steel reinforcement, electrochemical impedance spectroscopy, X-ray computed microtomography, visual analysis
Published in DiRROS: 05.07.2023; Views: 438; Downloads: 194
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8. Mechanistic study of fast performance decay of PtCu alloy-based catalyst layers for polymer electrolyte fuel cells through electrochemical impedance spectroscopyMaximilian Grandi, Matija Gatalo, Ana Rebeka Kamšek, Gregor Kapun, Kurt Mayer, Francisco Ruiz-Zepeda, Martin Šala, Bernhard Marius, Marjan Bele, Nejc Hodnik, Merit Bodner, Miran Gaberšček, Viktor Hacker, 2023, original scientific article Keywords: PEFC, catalyst layer, platinum–copper, degradation, ionomer, electrochemical impedance spectroscopy, membrane electrode assembly
Published in DiRROS: 23.06.2023; Views: 447; Downloads: 214
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9. Advanced method for efficient functionalization of polymers by intermediate free-radical formation with vacuum-ultraviolet radiation and producing superhydrophilic surfacesAlenka Vesel, Rok Zaplotnik, Miran Mozetič, Nina Recek, 2023, original scientific article Abstract: An efficient approach for tailoring surface properties of polymers is presented, which enables rapid modification leading to superhydrophilic properties. The approach is based on vacuum-ultraviolet radiation (VUV) pretreatment of the surface to create reactive dangling bonds. This step is followed by a second treatment using neutral oxygen atoms that react with the dangling bonds and form functional groups. The beneficial effect of VUV pretreatment for enhanced functionalization was clearly demonstrated by comparing VUV pretreatment in plasmas created in different gases, i.e., hydrogen, nitrogen, and oxygen, which differ in the intensity of VUV/UV radiation. The emission intensity of VUV radiation for all gases was measured by vacuum ultraviolet spectroscopy. It was shown that VUV has a strong influence on the treatment time and final surface wettability. A superhydrophilic surface was obtained only if using VUV pretreatment. Furthermore, the treatment time was significantly reduced to only a second of treatment. These findings show that such an approach may be used to enhance the surface reaction efficiency for further grafting of chemical groups.
Keywords: plasma treatment, vacuum-ultraviolet radiation treatment, surface functionalization, polymer polyvinyl chloride, vacuum-ultraviolet spectroscopy, vacuum-ultraviolet photons
Published in DiRROS: 06.06.2023; Views: 493; Downloads: 224
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10. Corrosion and protection of non-patinated, sulphide- and chloride-patinated bronzeŽiva Novak, Tadeja Kosec, 2022, original scientific article Abstract: The surface of bronze undergoes changes when it is exposed to a polluted atmosphere, and bronze should therefore be protected from this natural deterioration. The most common protective coating currently in use is Incralac, which includes toxic components and is reported to dissolve a few months after application. This work therefore investigates a fluoropolymer-based coating (FA-MS), and compares it to the protection offered by Incralac. Bronze samples (non-patinated, sulphide-patinated or chloride-patinated) were exposed to simulated urban rain for four months. The corrosion products formed were characterised using SEM/EDS and Raman analyses. To study the protection efficiency of the newly developed fluoropolymer coating (FA-MS) and Incralac protection, various electrochemical methods were used: measurements of open circuit potential linear polarisation and potentiodynamic measurements. Findings show that the FA-MS coating provides a protection efficiency of 71 % for chloride-patinated bronze and 99.5 % for sulphide-patinated bronze. Contact angles of the FA-MS samples were higher than those of the unprotected samples or the samples protected by Incralac, indicating better hydrophobic properties of the FA-MS coating.
Keywords: bronze, corrosion, SEM/EDS analyses, Raman spectroscopy, electrochemistry, odprti dostop
Published in DiRROS: 31.05.2023; Views: 403; Downloads: 153
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