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Query: "author" (David Last) .

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1.
Unearthing the soil-borne microbiome of land plants
Raúl Ochoa-Hueso, David J. Eldridge, Miguel Berdugo, Pankaj Trivedi, Blessing Sokoya, Concha Cano-Díaz, Sebastian Abades, Fernando D. Alfaro, Adebola R. Bamigboye, Felipe Bastida, Tine Grebenc, Tina Unuk Nahberger, 2024, original scientific article

Abstract: Plant–soil biodiversity interactions are fundamental for the functioning of terrestrial ecosystems. Yet, the existence of a set of globally distributed topsoil microbial and small invertebrate organisms consistently associated with land plants (i.e., their consistent soil-borne microbiome), together with the environmental preferences and functional capabilities of these organisms, remains unknown. We conducted a standardized field survey under 150 species of land plants, including 58 species of bryophytes and 92 of vascular plants, across 124 locations from all continents. We found that, despite the immense biodiversity of soil organisms, the land plants evaluated only shared a small fraction (less than 1%) of all microbial and invertebrate taxa that were present across contrasting climatic and soil conditions and vegetation types. These consistent taxa were dominated by generalist decomposers and phagotrophs and their presence was positively correlated with the abundance of functional genes linked to mineralization. Finally, we showed that crossing environmental thresholds in aridity (aridity index of 0.65, i.e., the transition from mesic to dry ecosystems), soil pH (5.5; i.e., the transition from acidic to strongly acidic soils), and carbon (less than 2%, the lower limit of fertile soils) can result in drastic disruptions in the associations between land plants and soil organisms, with potential implications for the delivery of soil ecosystem processes under ongoing global environmental change.
Keywords: belowground networks, environmental thresholds, moss microbiome, plant microbiome, plant–soil interactions
Published in DiRROS: 31.05.2024; Views: 30; Downloads: 28
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2.
Mechanism of action, potency and efficacy : considerations for cell therapies
Carl G. Simon Jr., Erich H. Bozenhardt, Christina M. Celluzzi, David Dobnik, Melanie L. Grant, Uma Lakshmipathy, Thiana Nebel, 2024, original scientific article

Abstract: One of the most challenging aspects of developing advanced cell therapy products (CTPs) is defining the mechanism of action (MOA), potency and efficacy of the product. This perspective examines these concepts and presents helpful ways to think about them through the lens of metrology. A logical framework for thinking about MOA, potency and efficacy is presented that is consistent with the existing regulatory guidelines, but also accommodates what has been learned from the 27 US FDA-approved CTPs. Available information regarding MOA, potency and efficacy for the 27 FDA-approved CTPs is reviewed to provide background and perspective. Potency process and efficacy process charts are introduced to clarify and illustrate the relationships between six key concepts: MOA, potency, potency test, efficacy, efficacy endpoint and efficacy endpoint test. Careful consideration of the meaning of these terms makes it easier to discuss the challenges of correlating potency test results with clinical outcomes and to understand how the relationships between the concepts can be misunderstood during development and clinical trials. Examples of how a product can be “potent but not efficacious” or “not potent but efficacious” are presented. Two example applications of the framework compare how MOA is assessed in cell cultures, animal models and human clinical trials and reveals the challenge of establishing MOA in humans. Lastly, important considerations for the development of potency tests for a CTP are discussed. These perspectives can help product developers set appropriate expectations for understanding a product’s MOA and potency, avoid unrealistic assumptions and improve communication among team members during the development of CTPs.
Keywords: cell therapy product, efficacy endpoint test, mechanism of action, potency test, metrology
Published in DiRROS: 27.05.2024; Views: 68; Downloads: 46
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3.
Connectivity with uncertainty regions given as line segments
Sergio Cabello, David Gajser, 2024, original scientific article

Abstract: For a set ${\mathcal Q}$ of points in the plane and a real number $\delta \ge 0$, let $\mathbb{G}_\delta({\mathcal Q})$ be the graph defined on ${\mathcal Q}$ by connecting each pair of points at distance at most $\delta$. We consider the connectivity of $\mathbb{G}_\delta({\mathcal Q})$ in the best scenario when the location of a few of the points is uncertain, but we know for each uncertain point a line segment that contains it. More precisely, we consider the following optimization problem: given a set ${\mathcal P}$ of $n-k$ points in the plane and a set ${\mathcal S}$ of $k$ line segments in the plane, find the minimum $\delta \ge 0$ with the property that we can select one point $p_s\in s$ for each segment $s\in {\mathcal S}$ and the corresponding graph $\mathbb{G}_\delta( {\mathcal P}\cup \{ p_s\mid s\in {\mathcal S}\})$ is connected. It is known that the problem is NP-hard. We provide an algorithm to exactly compute an optimal solution in ${\mathcal O}(f(k) n \log n)$ time, for a computable function $f(\cdot)$. This implies that the problem is FPT when parameterized by $k$. The best previous algorithm uses ${\mathcal O}((k!)^k k^{k+1}\cdot n^{2k})$ time and computes the solution up to fixed precision.
Keywords: computational geometry, uncertainty, geometric optimization, fixed parameter tractability, parametric search
Published in DiRROS: 13.05.2024; Views: 92; Downloads: 75
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4.
5.
Schwarz-Pick lemma for harmonic maps which are conformal at a point
Franc Forstnerič, David Kalaj, 2024, original scientific article

Abstract: We obtain a sharp estimate on the norm of the differential of a harmonic map from the unit disc ${\mathbb D}$ in ${\mathbb C}$ into the unit ball ${\mathbb B}^n$ in ${\mathbb R}^n$, $n\ge 2$, at any point where the map is conformal. In dimension $n=2$, this generalizes the classical Schwarz-Pick lemma, and for $n\ge 3$ it gives the optimal Schwarz-Pick lemma for conformal minimal discs ${\mathbb D}\to {\mathbb B}^n$. This implies that conformal harmonic immersions $M \to {\mathbb B}^n$ from any hyperbolic conformal surface are distance-decreasing in the Poincaré metric on $M$ and the Cayley-Klein metric on the ball ${\mathbb B}^n$, and the extremal maps are precisely the conformal embeddings of the disc ${\mathbb D}$ onto affine discs in ${\mathbb B}^n$. Motivated by these results, we introduce an intrinsic pseudometric on any Riemannian manifold of dimension at least three by using conformal minimal discs, and we lay foundations of the corresponding hyperbolicity theory.
Keywords: harmonic maps, minimal surfaces, Schwarz–Pick lemma, Cayley–Klein metric
Published in DiRROS: 25.04.2024; Views: 172; Downloads: 59
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6.
Sistematično iskanje obstoječih dokazov v literaturi
David Ožura, 2024, independent scientific component part or a chapter in a monograph

Keywords: onkologija, klinične raziskave, sistematično iskanje literature, iskanje literature, poizvedbe, pregledni članki, knjižnične storitve
Published in DiRROS: 24.04.2024; Views: 153; Downloads: 32
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7.
Indeksiranje in citiranje strokovne literature
David Ožura, 2024, independent scientific component part or a chapter in a monograph

Keywords: onkologija, klinične raziskave, citatni indeksi, kvantitativno vrednotenje raziskovalne uspešnosti, dejavnik vpliva revije, odprta znanost, citiranje literature, Vancouvrski citatni stil
Published in DiRROS: 24.04.2024; Views: 156; Downloads: 33
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8.
State of the art methodologies for the estimation of fire costs in buildings to support cost–benefit analysis
Ikwulono David Unobe, Andrea Lucherini, Shuna Ni, Thomas Gernay, Ranjit Kumar Chaudhary, Ruben Van Coile, 2024, review article

Abstract: Fires can lead to costly building damage as well as loss of lives and injuries. Installed to protect buildings from fire, or to limit the damage from such outbreaks, fire protection measures are a common feature in buildings. However, these features come at a cost. Although quite ubiquitous in buildings, the value of these features to private individuals and to society is not fully understood. To understand their value, a cost benefit analysis detailing the costs and benefits of fire protection measures is needed. Carrying out such an analysis requires methods for computing both the cost of these fire protection measures, and losses from fires (including both direct and indirect losses). This study outlines methodologies for evaluating those costs and losses. An exhaustive collection of available data necessary for estimating both costs and losses is presented. Several limitations in current methodologies and data constraints were identified, with recommendations proposed to address these shortcomings. Relevant sections of a study by the authors that refines fire protection cost estimation at national and sub-national levels are emphasized, including updated building categories, guidance on computing multipliers, and detailed cost calculation methods for installation and maintenance costs. The calculation uses regularly updated U.S. Census Bureau construction data, ensuring timely multiplier updates. The insights and suggestions presented in this study will ultimately refine the process of selecting fire protection strategies that maximize the net benefit of fire protection measures for both private stakeholders and society at large.
Keywords: fire protection measures, cost of fire protection, losses from fire, cost benefit analysis, installation costs, maintenance costs
Published in DiRROS: 18.04.2024; Views: 173; Downloads: 26
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9.
Urban greenspaces and nearby natural areas support similar levels of soil ecosystem services
David J. Eldridge, Haiying Cui, Jingyi Ding, Miguel Berdugo, Tadeo Sáez-Sandino, Jorge Duran, Juan J. Gaitan, José L. Blanco-Pastor, Alexandra Rodríguez, César Plaza, Tine Grebenc, Tina Unuk Nahberger, 2024, original scientific article

Abstract: Greenspaces are important for sustaining healthy urban environments and their human populations. Yet their capacity to support multiple ecosystem services simultaneously (multiservices) compared with nearby natural ecosystems remains virtually unknown. We conducted a global field survey in 56 urban areas to investigate the influence of urban greenspaces on 23 soil and plant attributes and compared them with nearby natural environments. We show that, in general, urban greenspaces and nearby natural areas support similar levels of soil multiservices, with only six of 23 attributes (available phosphorus, water holding capacity, water respiration, plant cover, arbuscular mycorrhizal fungi (AMF), and arachnid richness) significantly greater in greenspaces, and one (available ammonium) greater in natural areas. Further analyses showed that, although natural areas and urban greenspaces delivered a similar number of services at low (>25% threshold) and moderate (>50%) levels of functioning, natural systems supported significantly more functions at high (>75%) levels of functioning. Management practices (mowing) played an important role in explaining urban ecosystem services, but there were no effects of fertilisation or irrigation. Some services declined with increasing site size, for both greenspaces and natural areas. Our work highlights the fact that urban greenspaces are more similar to natural environments than previously reported and underscores the importance of managing urban greenspaces not only for their social and recreational values, but for supporting multiple ecosystem services on which soils and human well-being depends.
Keywords: soil, ecosystem services, urban forests
Published in DiRROS: 17.04.2024; Views: 182; Downloads: 86
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10.
Insight into the cross-linking of synthetic polypeptide gels prepared by ring-opening polymerization using ▫$L-$▫cystine ▫$N-$▫carboxyanhydride
Petra Utroša, Ema Žagar, David Pahovnik, 2024, original scientific article

Published in DiRROS: 17.04.2024; Views: 416; Downloads: 519
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