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Title:Framing cutting-edge integrative deep-sea biodiversity monitoring via environmental DNA and optoacoustic augmented infrastructures
Authors:ID Stefanni, Sergio (Author)
ID Mirimin, Luca (Author)
ID Stanković, David (Author)
ID Chatzievangelou, Damianos (Author)
ID Bongiorni, Lucia (Author)
ID Marini, Simone (Author)
ID Modica, Maria Vittoria (Author)
ID Manea, Elisabetta (Author)
ID Bonofiglio, Federico (Author)
ID Rio Fernandez, Joaquin del (Author)
ID Cukrov, Neven (Author)
ID Gavrilović, Ana (Author)
ID De Leo, Fabio C. (Author)
ID Aguzzi, Jacopo (Author)
Files:URL URL - Source URL, visit https://www.frontiersin.org/articles/10.3389/fmars.2021.797140/full
 
.pdf PDF - Presentation file, download (3,63 MB)
MD5: A2DFDF2437F37AE665E40F884EA10FD7
 
URL URL - Source URL, visit https://doi.org/10.3389/fmars.2021.797140
 
Language:English
Typology:1.02 - Review Article
Organization:Logo NIB - National Institute of Biology
Abstract:Deep-sea ecosystems are reservoirs of biodiversity that are largely unexplored, but their exploration and biodiscovery are becoming a reality thanks to biotechnological advances (e.g., omics technologies) and their integration in an expanding network of marine infrastructures for the exploration of the seas, such as cabled observatories. While still in its infancy, the application of environmental DNA (eDNA) metabarcoding approaches is revolutionizing marine biodiversity monitoring capability. Indeed, the analysis of eDNA in conjunction with the collection of multidisciplinary optoacoustic and environmental data, can provide a more comprehensive monitoring of deep-sea biodiversity. Here, we describe the potential for acquiring eDNA as a core component for the expanding ecological monitoring capabilities through cabled observatories and their docked Internet Operated Vehicles (IOVs), such as crawlers. Furthermore, we provide a critical overview of four areas of development: (i) Integrating eDNA with optoacoustic imaging; (ii) Development of eDNA repositories and cross-linking with other biodiversity databases; (iii) Artificial Intelligence for eDNA analyses and integration with imaging data; and (iv) Benefits of eDNA augmented observatories for the conservation and sustainable management of deep-sea biodiversity. Finally, we discuss the technical limitations and recommendations for future eDNA monitoring of the deep-sea. It is hoped that this review will frame the future direction of an exciting journey of biodiscovery in remote and yet vulnerable areas of our planet, with the overall aim to understand deep-sea biodiversity and hence manage and protect vital marine resources.
Publication status:Published
Publication version:Version of Record
Publication date:12.01.2022
Year of publishing:2022
Number of pages:str. 1-17
Numbering:Vol. 8
PID:20.500.12556/DiRROS-20091 New window
UDC:574
ISSN on article:2296-7745
DOI:10.3389/fmars.2021.797140 New window
COBISS.SI-ID:93957635 New window
Note:Nasl. z nasl. zaslona; Opis vira z dne 18. 1. 2022; Št. članka: 797140;
Publication date in DiRROS:05.08.2024
Views:447
Downloads:398
Metadata:XML DC-XML DC-RDF
:
STEFANNI, Sergio, MIRIMIN, Luca, STANKOVIĆ, David, CHATZIEVANGELOU, Damianos, BONGIORNI, Lucia, MARINI, Simone, MODICA, Maria Vittoria, MANEA, Elisabetta, BONOFIGLIO, Federico, RIO FERNANDEZ, Joaquin del, CUKROV, Neven, GAVRILOVIĆ, Ana, DE LEO, Fabio C. and AGUZZI, Jacopo, 2022, Framing cutting-edge integrative deep-sea biodiversity monitoring via environmental DNA and optoacoustic augmented infrastructures. Frontiers in marine science [online]. 2022. Vol. 8, p. 1–17. [Accessed 21 April 2025]. DOI 10.3389/fmars.2021.797140. Retrieved from: https://dirros.openscience.si/IzpisGradiva.php?lang=eng&id=20091
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Record is a part of a journal

Title:Frontiers in marine science
Shortened title:Front. mar. sci.
Publisher:Frontiers Media S.A.
ISSN:2296-7745
COBISS.SI-ID:523094809 New window

Document is financed by a project

Funder:EC - European Commission
Project number:871153
Name:Joint European Research Infrastructure of Coastal Observatories: Science, Service, Sustainability - JERICO-S3
Acronym:JERICO-S3
Funder:EC - European Commission
Project number:824348
Name:Development and demonstration of a long-endurance sea surveying autonomous unmanned vehicle with gliding capability powered by hydrogen fuel cell
Acronym:ENDURUNS
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P1-0237-2020
Name:Raziskave obalnega morja
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P1-0255-2017
Name:Združbe, interakcije in komunikacije v ekosistemih
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J1-3015-2021
Name:fDNAaqua – Zbiranje okoljske DNA s pomočjo filtratorskih organizmov: orodje za spremljanje biotske raznovrstnosti vod
Funder:Other - Other funder or multiple funders
Project number:MarTERA ERA-Net Cofound
Name:Autonomous Robotic Sea-Floor Infrastructure for Benthopelagic Monitoring
Acronym:ARIM
Funder:Other - Other funder or multiple funders
Project number:TEC2017-87861-R
Acronym:RESBIO
Funder:Other - Other funder or multiple funders
Project number:CEX2019-000928-S
Name:Severo Ochoa Centre of Excellence
Funder:Other - Other funder or multiple funders
Project number:N. 850, dd. 27 ottobre 2017
Name:Bando premiale
Acronym:FOE 2015
Funder:Other - Other funder or multiple funders
Project number:30199
Name:EARTH’s CRUst Imagery for Investigating Seismicity, Volcanism, and Marine Natural Resources in the Sicilian Offshore
Acronym:EarthCruisers

Licences

License:CC BY 4.0, Creative Commons Attribution 4.0 International
Link:http://creativecommons.org/licenses/by/4.0/
Description:This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.

Secondary language

Language:Slovenian
Keywords:senzorji na osnovi omik, eDNA metabarkodiranje, genetski markerji, slikovno zaznavanje, umetna inteligenca, repozitoriji podatkov, ohranjanje globokomorskih ekosistemov


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