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Title:GoMapMan : integration, consolidation and visualization of plant gene annotations within the MapMan ontology
Authors:ID Ramšak, Živa (Author)
ID Baebler, Špela (Author)
ID Rotter, Ana (Author)
ID Korbar, Matej (Author)
ID Mozetič, Igor (Author)
ID Usadel, Björn (Author)
ID Gruden, Kristina (Author)
Files:URL URL - Source URL, visit http://nar.oxfordjournals.org/content/42/D1/D1167.full.pdf+html
 
.pdf PDF - Presentation file, download (4,88 MB)
MD5: 4C72646A676D77C3CA5A728F476524A6
 
Language:English
Typology:1.01 - Original Scientific Article
Organization:Logo NIB - National Institute of Biology
Abstract:GoMapMan (http://www.gomapman.org) is an open web-accessible resource for gene functional annotations in the plant sciences. It was developed to facilitate improvement, consolidation and visualization of gene annotations across several plant species. GoMapMan is based on the MapMan ontology, organized in the form of a hierarchical tree of biological concepts, which describe gene functions. Currently, genes of the model species Arabidopsis and three crop species (potato, tomato and rice) are included. The main features of GoMapMan are (i) dynamic and interactive gene product annotation through various curation options; (ii) consolidation of gene annotations for different plant species through the integration of orthologue group information; (iii) traceability of gene ontology changes and annotations; (iv) integration of external knowledge about genes from different public resources; and (v) providing gathered information to high throughput analysis tools via dynamically generated export files. All of the GoMapMan functionalities are openly available, with the restriction on the curation functions, which require prior registration to ensure traceability of the implemented changes.
Keywords:genes, plants
Publication status:Published
Publication version:Version of Record
Publication date:01.01.2014
Year of publishing:2014
Number of pages:str. D1167-D1175
Numbering:Vol. 42, iss. D1
PID:20.500.12556/DiRROS-20001 New window
UDC:575.111
ISSN on article:0305-1048
DOI:10.1093/nar/gkt1056 New window
COBISS.SI-ID:2966607 New window
Publication date in DiRROS:02.08.2024
Views:509
Downloads:260
Metadata:XML DC-XML DC-RDF
:
RAMŠAK, Živa, BAEBLER, Špela, ROTTER, Ana, KORBAR, Matej, MOZETIČ, Igor, USADEL, Björn and GRUDEN, Kristina, 2014, GoMapMan : integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic acids research [online]. 2014. Vol. 42, no. D1, p. d1167–d1175. [Accessed 28 March 2025]. DOI 10.1093/nar/gkt1056. Retrieved from: https://dirros.openscience.si/IzpisGradiva.php?lang=eng&id=20001
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Record is a part of a journal

Title:Nucleic acids research
Shortened title:Nucleic acids res.
Publisher:Oxford University Press
ISSN:0305-1048
COBISS.SI-ID:3269647 New window

Document is financed by a project

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J4-4165-2011
Name:Kompromisi obrambe in razvoja v večtrofični interakciji med krompirjem in dvema glavnima škodljivcema
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J2-2353-2009
Name:Semantično odkrivanje zakonitosti v okolju spletnih servisov (SemantičniSoKD)
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P2-0103-2009
Name:Tehnologije znanja
Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P4-0165-2009
Name:Biotehnologija in sistemska biologija rastlin

Licences

License:CC BY 3.0, Creative Commons Attribution 3.0 Unported
Link:https://creativecommons.org/licenses/by/3.0/deed.en
Description:You are free to reproduce and redistribute the material in any medium or format. You are free to remix, transform, and build upon the material for any purpose, even commercially. You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits.

Secondary language

Language:Slovenian
Keywords:geni, rastline


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