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Title:Extraction of DNA from different sample types - a practical approach for GMO testing
Authors:ID Žel, Jana (Author)
ID Demšar, Tina (Author)
ID Štebih, Dejan (Author)
ID Milavec, Mojca (Author)
ID Gruden, Kristina (Author)
Files:.pdf PDF - Presentation file, download (793,24 KB)
MD5: 3E9207AE17E491A9D3DAE98567DAB855
 
URL URL - Source URL, visit https://www.dlib.si/details/URN:NBN:SI:doc-WCYH8Q97
 
Language:English
Typology:1.01 - Original Scientific Article
Organization:Logo NIB - National Institute of Biology
Abstract:Current methods based on DNA targets for the detection, identification and quantification of genetically modified organisms (GMOs) involve extraction of the DNA. Different extraction procedures have been developed for the great variety of samples from food, feed, seeds and particular plant parts. This makes the operation of routine analytical laboratories complex and workloads heavy. Here we present a decision-making system, developed over many years of GMO testing on different samples, that result in the application of only a few extraction methods for the majority of samples. Developed decision-making system enables quicker and more cost effective testing of GMOs. In addition, the performance of DNA extraction resulting from the use of the selected extraction methods is presented for use in subsequent testing of GMOs by real time PCR methods. This approach can be used as a model for similar systems based on nucleic acid analysis in food, feed, seeds and plants.
Keywords:extraction methods, genetically modified organisms, GMO, decision- making system (biology), GMO testing, cetyltrimethylammonium bromide, CTAB
Publication status:Published
Publication version:Version of Record
Publication date:04.07.2017
Year of publishing:2015
Number of pages:str. 61-75
Numbering:Vol. 58, št. 2
PID:20.500.12556/DiRROS-19939 New window
UDC:604.6
ISSN on article:1408-3671
COBISS.SI-ID:3752783 New window
Publication date in DiRROS:29.07.2024
Views:286
Downloads:182
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Record is a part of a journal

Title:Acta biologica slovenica : ABS
Shortened title:Acta biol. slov.
Publisher:Društvo biologov Slovenije
ISSN:1408-3671
COBISS.SI-ID:68526592 New window

Document is financed by a project

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P4-0165-2015
Name:Biotehnologija in sistemska biologija rastlin

Funder:EC - European Commission
Project number:613908
Name:Development of Cost efficient Advanced DNA-based methods for specific Traceability issues and High Level On-site applicatioNs
Acronym:DECATHLON

Funder:Other - Other funder or multiple funders
Funding programme:Slovenian Ministry of Agriculture and the Environment
Project number:2330-13-000072

Licences

License:CC BY-NC-ND 4.0, Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
Link:http://creativecommons.org/licenses/by-nc-nd/4.0/
Description:The most restrictive Creative Commons license. This only allows people to download and share the work for no commercial gain and for no other purposes.

Secondary language

Language:Slovenian
Title:Ekstrakcija DNA iz različnih vrst vzorcev - praktični pristop za določanje GSO
Abstract:Metode za določanje, identifikacijo in kvantifikacijo gensko spremenjenih organizmov (GSO) temeljijo na zaznavanju značilnih zaporedij DNA, zato je ključni del metode ekstrakcija DNA. Za ekstrakcijo DNA iz različnih vrst vzorcev, kot so živila, krma, semena in deli rastlin, so razviti različni postopki. Delo rutinskih laboratorijev je zato zelo kompleksno in obsežno. Tu predstavljamo sistem odločanja, ki smo ga razvili v mnogih letih testiranja GSO v različnih vzorcih. Z uporabo nekaj izbranih metod ekstrakcije lahko analiziramo večino vzorcev na hitrejši in finančno učinkovitejši način. Dodatno podajamo informacijo o uporabi izbranih ekstrakcijskih metod v povezavi z nadaljnjo analizo GSO s PCR v realnem času. Ta pristop se lahko uporabi kot model za podobne sisteme, ki temeljijo na analizi nukleinskih kislin v živilih, krmi, semenih in rastlinah.
Keywords:metode ekstrakcije, gensko spremenjeni organizmi, GSO, sistem odločanja (biologija), GSO testiranje, cetiltrimetilamonijev bromid


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