| Title: | A framework for the evaluation of biosecurity, commercial, regulatory, and scientific impacts of plant viruses and viroids identified by NGS technologies |
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| Authors: | ID Massart, Sébastien (Author)
ID Candresse, Thierry (Author)
ID Gil, José (Author)
ID Lacomme, Christophe (Author)
ID Predajna, Lukas (Author)
ID Ravnikar, Maja (Author)
ID Reynard, Jean-Sébastien (Author)
ID Rumbou, Artemis (Author)
ID Saldarelli, Pasquale (Author)
ID Škorić, Dijana (Author)
ID Vainio, Eeva J. (Author)
ID Valkonen, Jari P. T. (Author)
ID Vanderschuren, Hervé (Author)
ID Varveri, Christina (Author)
ID Wetzel, Thierry (Author) |
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| Files: |  PDF - Presentation file, download (760,13 KB)
MD5: 7AA5F32A555FABB9AC12CB32BCCE9091
 URL - Source URL, visit https://doi.org/10.3389/fmicb.2017.00045
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| Language: | English |
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| Typology: | 1.01 - Original Scientific Article |
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| Organization: |  NIB - National Institute of Biology
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| Abstract: | Recent advances in high-throughput sequencing technologies and bioinformatics have generated huge new opportunities for discovering and diagnosing plant viruses and viroids. Plant virology has undoubtedly benefited from these new methodologies, but at the same time, faces now substantial bottlenecks, namely the biological characterization of the newly discovered viruses and the analysis of their impact at the biosecurity, commercial, regulatory, and scientific levels. This paper proposes a scaled and progressive scientific framework for efficient biological characterization and risk assessment when a previously known or a new plant virus is detected by next generation sequencing (NGS) technologies. Four case studies are also presented to illustrate the need for such a framework, and to discuss the scenarios. |
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| Keywords: | NGS, pest risk analysis, virus diseases, biological characterization, plant health, regulatory agencies |
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| Publication status: | Published |
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| Publication version: | Version of Record |
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| Publication date: | 24.01.2017 |
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| Year of publishing: | 2017 |
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| Number of pages: | str. 1-7 |
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| Numbering: | Vol. 8 |
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| PID: | 20.500.12556/DiRROS-19724  |
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| UDC: | 578 |
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| ISSN on article: | 1664-302X |
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| DOI: | 10.3389/fmicb.2017.00045 |
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| COBISS.SI-ID: | 4549711 |
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| Note: | Nasl. z nasl. zaslona;
Opis vira z dne 4. 1. 2018;
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| Publication date in DiRROS: | 25.07.2024 |
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| Views: | 314 |
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| Downloads: | 169 |
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| Metadata: |    |
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