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Title:Interactive exploration of heterogeneous biological networks with Biomine Explorer
Authors:ID Podpečan, Vid (Author)
ID Ramšak, Živa (Author)
ID Gruden, Kristina (Author)
ID Toivonen, Hannu (Author)
ID Lavrač, Nada (Author)
Files:.pdf PDF - Presentation file, download (294,66 KB)
MD5: 49EB54EADA61999F07B12F34B8FCA27D
 
URL URL - Source URL, visit https://doi.org/10.1093/bioinformatics/btz509
 
Language:English
Typology:1.01 - Original Scientific Article
Organization:Logo NIB - National Institute of Biology
Abstract:Biomine Explorer is a web application that enables interactive exploration of large heterogeneous biological networks constructed from selected publicly available biological knowledge sources. It is built on top of Biomine, a system which integrates cross-references from several biological databases into a large heterogeneous probabilistic network. Biomine Explorer offers user-friendly interfaces for search, visualization, exploration and manipulation as well as public and private storage of discovered subnetworks with permanent links suitable for inclusion into scientific publications. A JSON-based web API for network search queries is also available for advanced users.
Keywords:biological networks, bioinformatic
Publication status:Published
Publication version:Version of Record
Publication date:15.12.2019
Year of publishing:2019
Number of pages:str. 5385-5388
Numbering:Vol. 35, iss. 24
PID:20.500.12556/DiRROS-19585 New window
UDC:004.9
ISSN on article:1367-4803
DOI:10.1093/bioinformatics/btz509 New window
COBISS.SI-ID:5135439 New window
Publication date in DiRROS:23.07.2024
Views:357
Downloads:194
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Record is a part of a journal

Title:Bioinformatics
Shortened title:Bioinformatics
Publisher:Oxford University Press
ISSN:1367-4803
COBISS.SI-ID:806536 New window

Document is financed by a project

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:N2-0078-2018
Name:Semantično rudarjenje prostodostopnih povezanih podatkov

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J7-7303-2016
Name:Analiza heterogenih informacijskih omrežij za odkrivanje zakonitosti v znanostih o življenju

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P2-0103-2015
Name:Tehnologije znanja

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:J6-9372-2018
Name:TermFrame: Terminologija in sheme znanja v medjezikovnem prostoru

Funder:ARIS - Slovenian Research and Innovation Agency
Project number:P4-0165-2015
Name:Biotehnologija in sistemska biologija rastlin

Licences

License:CC BY-NC 4.0, Creative Commons Attribution-NonCommercial 4.0 International
Link:http://creativecommons.org/licenses/by-nc/4.0/
Description:A creative commons license that bans commercial use, but the users don’t have to license their derivative works on the same terms.

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