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Abstract: Genetic diversity is a critical but often overlooked component of biological diversity. The European H2020 FORGENIUS project is aimed at increasing the quality and quantity of genetic data to start monitoring the European network of forest Genetic Conservation Units (GCUs). A first step in this direction was developing standardised genomic resources for 23 forest tree species, spanning from rare and scattered (e.g., Abies nebrodensis and Torminalis glaberrima) to widespread and stand-forming, economically relevant ones (e.g., Fagus sylvatica, Picea abies and Pinus sylvestris). Here, we describe the development and application of targeted genotyping tools, primarily based on Single Primer Enrichment Technology (SPET), along with existing SNP arrays for the selected species. The SPET panels developed in FORGENIUS were designed to capture ⁓10,000 loci per species, balancing species-specific and randomly distributed regions to ensure broad genome coverage and minimise ascertainment bias. Across 7220 genotyped trees, we identified over 1.8 million single nucleotide polymorphisms (SNPs) covering approximately 50 Mb of DNA sequence. SPET panels demonstrated high genotyping efficiency and cross-species transferability, especially within genera such as Quercus and Abies. They represent a cost-effective, flexible, and scalable solution for population-level genetic assessments across diverse taxa, enabling standardised, genome-wide characterisation of the GCU network. These resources not only promote the establishment of genetic monitoring, support genetically informed conservation strategies and improve our understanding of adaptive responses in European forests, but also enhance species delimitation and hybrid detection, and enable the characterisation of phylogenetically related but previously underexplored species.
Keywords: forest tree species, genetic conservation units, genetic diversity, genetic monitoring, single primer enrichment technology, targetedgenotyping, SNP, SPET
Published in DiRROS: 06.03.2026; Views: 226; Downloads: 176
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Abstract: The dataset includes Pan-European maps of timber volume (Vol), above-ground biomass (AGB), and deciduous-coniferous proportion (DCP) with a pixel size of 10×10 m for the reference year 2020. In addition, a measure of prediction uncertainty is provided for each pixel. The maps have been created using a combination of a Sentinel-2 mosaic, Copernicus layers, and National Forest Inventory (NFI) data. The mapping was done with the k-Nearest Neighbour (kNN, k=7) approach with harmonized data of species-specific Vol and AGB from 14 NFIs consisting of approximately 151 000 field plots across Europe. The maps cover 40 European countries, forming a continuous coverage of the western part of the European continent. A sample of 1/3 of NFI plots was left out for validation, whereas 2/3 of the plots were used for mapping. Maps were created independently for 13 multi-country processing areas. Root-mean-squared-errors (RMSEs) for AGB ranged from 53 % in the Nordic processing area to 73 % in the South-Eastern area. The maps are on average nearly unbiased on European level (1.0 % of the mean AGB), but show significant overestimation for small biomass values (53 % bias for forests with AGB less than 150 t/ha) and underestimation for high biomass values (-55 % bias for forests with AGB higher than 500 t/ha). The created maps are the first of their kind as they are utilizing a large number of harmonized NFI plot observations and consistent remote sensing data for high-resolution forest attribute mapping. While the published maps can be useful for visualization and other purposes, they are primarily meant as auxiliary information in model-assisted estimation where model-related biases can be mitigated, and field-based estimates improved. Therefore, additional calibration procedures were not applied, and especially high Vol and AGB values tend to be underestimated. We therefore discourage from summarizing map values (pixel counting) over areas in interest, as this may inadvertently result in biased estimates.
Keywords: European forest monitoring system, remote sensing, in-situ data, forest attribute maps
Published in DiRROS: 17.06.2025; Views: 770; Downloads: 518
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Keywords: national forest inventory, monitoring, developement of forests, national level, Slovenia
Published in DiRROS: 24.07.2023; Views: 1565; Downloads: 724
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Abstract: Priority habitat types (HTs) within the Natura 2000 network are of the highest importance for conservation in Europe. However, they often occur in smaller areas and their conservation status is not well understood. One such HT is that of the Tilio–Acerion forests of slopes, screes and ravines (9180*). The Natura 2000 study site, Boč–Haloze–Donačka gora, in the Sub-Pannonian region of eastern Slovenia is characterized by a matrix of European beech forests and includes rather small, fragmented areas covered by Tilio–Acerion forests. The goal of this research was to examine the heterogeneity and conservation status of the selected HT through field mapping, which was performed in the summer of 2020. As the conservation of HT calls for a more detailed approach, we distinguished between the following four pre-defined habitat subtypes: (i) Acer pseudoplatanus-Ulmus glabra stands growing mostly in concave terrain, (ii) Fraxinus excelsior stands growing on slopes, (iii) Tilia sp. stands with thermophilous broadleaves occurring on ridges and slopes, (iv) Acer pseudoplatanus stands occurring on more acidic soils with an admixture of Castanea sativa. Field mapping information was complemented with the assessment of habitat subtype characteristics using remote sensing data. The results showed that habitat subtypes differed significantly in terms of area, tree species composition, forest stand characteristics, relief features and the various threats they experienced (e.g., fragmentation, tree mortality, ungulate browsing pressure). The differences between subtypes were also evident for LiDAR-derived environmental factors related to topography (i.e., terrain steepness and Topographic Position Index). This study provides a baseline for setting more realistic objectives for the conservation management of priority forest HTs. Due to the specificities of each individual habitat subtype, conservation activities should be targeted to the Natura 2000 habitat subtype level.
Keywords: forest habitat subtype, monitoring, biodiversity conservation, LiDAR, Slovenia, NATURA 2000
Published in DiRROS: 03.02.2023; Views: 2233; Downloads: 1103
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Abstract: Urbanization decreases the species richness and results in the homogenization of bird communities. Bird species are important indicator species for biodiversity and reflect the habitat quality of urban forests and other green spaces. In this study we investigated the key drivers that influence bird communities in urban forests and green spaces in the Southeastern European city of Ljubljana, Slovenia. We were interested in how the number of species, species dissimilarity and indicator species are affected by the type of green space (urban forest vs park), area of green space and type of urbanization (urban vs peri-urban areas). We sampled birds twice in 2012 in 39 standardized point counts across Ljubljana. We found that the abundance was influenced by the area of the green space. Species dissimilarity and species turnover are affected by the area and type of green space. Interestingly, the analysis showed that the species composition of peri-urban areas was similar to that of urban areas. Indicator species were found for all environmental variables. On the basis of the results, we suggest the strategy that would increase the diversity of birds and increase the stability of their populations in urban areas. Urban planners should encourage 1) both forests and parks since they harbour different species of birds, 2) larger green spaces since larger areas have species that are more typical of larger areas and 3) a mosaic of a larger number of smaller forest remnants combined with larger forest complex serving as source areas.
Keywords: urban forest, bird species composition, forest remnant, urbanization, peri-urban forest, bird monitoring, species richness
Published in DiRROS: 14.06.2021; Views: 2730; Downloads: 1663
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