1. The FORGENIUS genomic resources : new genotyping tools and genomic data for 23 forest tree species and their genetic conservation unitsSara Pinosio, Francesca Bagnoli, Camilla Avanzi, Maria Beatrice Castellani, Arcangela Frascella, Susan McEvoy, Sanna Olsson, Ilaria Spanu, Elia Vajana, Marko Bajc, Gregor Božič, Rok Damjanić, Natalija Dovč, Luka Krajnc, Marija Kravanja, Gal Oblišar, Gregor Skoberne, Marjana Westergren, 2026, original scientific article Abstract: Genetic diversity is a critical but often overlooked component of biological diversity. The European H2020 FORGENIUS project is aimed at increasing the quality and quantity of genetic data to start monitoring the European network of forest Genetic Conservation Units (GCUs). A first step in this direction was developing standardised genomic resources for 23 forest tree species, spanning from rare and scattered (e.g., Abies nebrodensis and Torminalis glaberrima) to widespread and stand-forming, economically relevant ones (e.g., Fagus sylvatica, Picea abies and Pinus sylvestris). Here, we describe the development and application of targeted genotyping tools, primarily based on Single Primer Enrichment Technology (SPET), along with existing SNP arrays for the selected species. The SPET panels developed in FORGENIUS were designed to capture ⁓10,000 loci per species, balancing species-specific and randomly distributed regions to ensure broad genome coverage and minimise ascertainment bias. Across 7220 genotyped trees, we identified over 1.8 million single nucleotide polymorphisms (SNPs) covering approximately 50 Mb of DNA sequence. SPET panels demonstrated high genotyping efficiency and cross-species transferability, especially within genera such as Quercus and Abies. They represent a cost-effective, flexible, and scalable solution for population-level genetic assessments across diverse taxa, enabling standardised, genome-wide characterisation of the GCU network. These resources not only promote the establishment of genetic monitoring, support genetically informed conservation strategies and improve our understanding of adaptive responses in European forests, but also enhance species delimitation and hybrid detection, and enable the characterisation of phylogenetically related but previously underexplored species. Keywords: forest tree species, genetic conservation units, genetic diversity, genetic monitoring, single primer enrichment technology, targetedgenotyping, SNP, SPET Published in DiRROS: 06.03.2026; Views: 226; Downloads: 176
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2. Connected learning approach for teaching forest genetic diversityPetteri Vanninen, Eero Kovanen, Egbert Beuker, Katja Kavčič Sonnenschein, Urša Vilhar, Marjana Westergren, Saara Nissinen, Carola Chiusi, Anna-Maria Farsakoglou, 2025, other monographs and other completed works Keywords: forest pedagogy, forest genetic diversity Published in DiRROS: 24.12.2025; Views: 424; Downloads: 205
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3. The European Information System on Forest Genetic Resources (EUFGIS): : a transnational tool for genetic conservation and policy supportMichele Bozzano, Valentina Barbiero, Egbert Beuker, Simone Mori, Mari Rusanen, Ivan Scotti, Milko Skofic, Marjana Westergren, 2025, published scientific conference contribution abstract Keywords: forest genetic resources, information system, Europe Published in DiRROS: 26.11.2025; Views: 291; Downloads: 190
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4. Resilience of genetic diversity in forest trees over the QuaternaryPascal Milesi, Chedly Kastallya, Benjamin Dauphin, Sandra Cervantes, Francesca Bagnoli, Katharina Budde, Stephen Cavers, Bruno Fady, Patricia Faivre-Rampant, Santiago C. González-Martínez, Marjana Westergren, 2024, original scientific article Abstract: The effect of past environmental changes on the demography and genetic diversity of natural populations remains a contentious issue and has rarely been investigated across multiple, phylogenetically distant species. Here, we perform comparative population genomic analyses and demographic inferences for seven widely distributed and ecologically contrasting European forest tree species based on concerted sampling of 164 populations across their natural ranges. For all seven species, the effective population size, Ne, increased or remained stable over many glacial cycles and up to 15 million years in the most extreme cases. Surprisingly, the drastic environmental changes associated with the Pleistocene glacial cycles have had little impact on the level of genetic diversity of dominant forest tree species, despite major shifts in their geographic ranges. Based on their trajectories of Ne over time, the seven tree species can be divided into three major groups, highlighting the importance of life history and range size in determining synchronous variation in genetic diversity over time. Altogether, our results indicate that forest trees have been able to retain their evolutionary potential over very long periods of time despite strong environmental changes. Keywords: genetic diversity, forest trees, environmental changes Published in DiRROS: 29.10.2024; Views: 961; Downloads: 914
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5. Forest genetic resources and forest reproductive material at the crosssection of multiple policy domains in EuropeTodora Rogelja, Laura Secco, Aurelio Padovezi, Davide Pettenella, Mauro Masiero, Elena Pisani, Jacopo Giacomoni, Riccardo Da Re, Sofia Caiolo, Marko Lovrić, Anna-Maria Farsakoglou, Michele Bozzano, François Lefèvre, Bruno Fady, Aurore Desgroux, Santiago C. González-Martínez, Ulla Ovaska, Mari Rusanen, Egbert Beuker, Katriina Soini, Anže Japelj, Konrad Heino, Martin Braun, Erik Dahl Kjær, Jon Kehlet Hansen, Georgeta Mihai, Alin Alexandru, Ecaterina-Nicoleta Apostol, Alicia Fernandez Calvo, Laura Maria Luquero Ramos, Mariano Navarro De La Cruz, Giovanna Ottaviani Aalmo, Bent Leonhard, 2023, published scientific conference contribution Keywords: forest genetic diversity, forest biodiversity, sustainable forest management, policy gap analysis, forest genetic resources, forest reproductive material Published in DiRROS: 05.10.2023; Views: 1982; Downloads: 688
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6. Forest genetics research in the mediterranean basin : bibliometric analysis, knowledge gaps, and perspectivesBruno Fady, Edoardo Esposito, Khaled Abulaila, Jelena M. Aleksic, Ricardo Alía, Paraskevi Alizoti, Ecaterina-Nicoleta Apostol, Filipos Aravanopoulos, Dalibor Ballian, Magda Bou Dagher Kharrat, Hojka Kraigher, Marjana Westergren, 2022, original scientific article Abstract: Purpose of Review Recognizing that in the context of global change, tree genetic diversity represents a crucial resource for future forest adaptation, we review and highlight the major forest genetics research achievements of the past decades in biodiversity-rich countries of the Mediterranean region. For this, we conducted a bibliometric analysis of the scientific literature spanning the past thirty years (1991–2020). Putting together the representative regionwide expertise of our co-authorship, we propose research perspectives for the next decade. Recent Findings Forest genetics research in Mediterranean countries is organized into three different scientific domains of unequal importance. The domain “Population diversity and Differentiation” related to over 62% of all publications of the period, the domain “Environmental conditions, growth and stress response” to almost 23%, and the domain “Phylogeography” to almost 15%. Citation rate was trending the opposite way, indicating a strong and sustained interest in phylogeography and a rising interest for genetics research related to climate change and drought resistance. The share of publications from Asia and Africa to the total within the Mediterranean increased significantly during the 30-year period analyzed, reaching just below 30% during the last decade. Summary Describing poorly known species and populations, including marginal populations, using the full potential of genomic methods, testing adaptation in common gardens, and modeling adaptive capacity to build reliable scenarios for forest management remain strategic research priorities. Delineating areas of high and low genetic diversity, for conservation and restoration, respectively, is needed. Joining forces between forest management and forest research, sharing data, experience, and knowledge within and among countries will have to progress significantly, e.g., to assess the potential of Mediterranean genetic resources as assisted migration material worldwide. Keywords: conservation ·, forest genetic resources, genetic diversity, global change, Mediterranean, sustainable management Published in DiRROS: 09.12.2022; Views: 1637; Downloads: 1035
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8. The interplay between forest management practices, genetic monitoring, and other long-term monitoring systemsDarius Kavaliauskas, Barbara Fussi, Marjana Westergren, Filipos Aravanopoulos, Domen Finžgar, Roland Baier, Paraskevi Alizoti, Gregor Božič, Evangelia V. Avramidou, Monika Konnert, Hojka Kraigher, 2018, review article Abstract: The conservation and sustainable use of forests and forest genetic resources (FGR) is a challenging task for scientists and foresters. Forest management practices can affect diversity on various levels: genetic, species, and ecosystem. Understanding past natural disturbance dynamics and their level of dependence on human disturbances and management practices is essential for the conservation and management of FGR, especially in the light of climate change. In this review, forest management practices and their impact on genetic composition are reviewed, synthesized, and interpreted in the light of existing national and international forest monitoring schemes and concepts from various European projects. There is a clear need and mandate for forest genetic monitoring (FGM), while the requirements thereof lack complementarity with existing forest monitoring. Due to certain obstacles (e.g., the lack of unified FGM implementation procedures across the countries, high implementation costs, large number of indicators and verifiers for FGM proposed in the past), merging FGM with existing forest monitoring is complicated. Nevertheless, FGM is of paramount importance for forestry and the natural environment in the future, regardless of the presence or existence of other monitoring systems, as it provides information no other monitoring system can yield. FGM can provide information related to adaptive and neutral genetic diversity changes over time, on a species and/or on a population basis and can serve as an early warning system for the detection of potentially harmful changes of forest adaptability. In addition, FGM offers knowledge on the adaptive potential of forests under the changing environment, which is important for the long-term conservation of FGR Keywords: forest monitoring, forest genetic monitoring, forest genetic diversity, silviculture Published in DiRROS: 20.02.2020; Views: 3234; Downloads: 2320
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