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Query: "author" (Ljubetič Ajasja) .

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1.
Massively parallel measurement of protein–protein interactions by sequencing using MP3-seq
Alexandr Baryshev, Benjamin Groves, Cirstyn Michel, David Baker, Ajasja Ljubetič, Georg Seelig, 2024, original scientific article

Keywords: proteins, proteins interactions, sequencing, MP3-seq
Published in DiRROS: 30.10.2024; Views: 298; Downloads: 941
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2.
Comparative simulative analysis and design of single-chain self-assembled protein cages
Fei Xiao, Longfei Luo, Xin Liu, Ajasja Ljubetič, Nengzhi Jin, Roman Jerala, Guang Hu, 2024, original scientific article

Abstract: Coiled-coil protein origami (CCPO) is a modular strategy for the de novo design of polypeptide nanostructures. It represents a type of modular design based on pairwise-interacting coiled-coil (CC) units with a single-chain protein programmed to fold into a polyhedral cage. However, the mechanisms underlying the self-assembly of the protein tetrahedron are still not fully understood. In the present study, 18 CCPO cages with three different topologies were modeled in silico. Then, molecular dynamics simulations and CC parameters were calculated to characterize the dynamic properties of protein tetrahedral cages at both the local and global levels. Furthermore, a deformed CC unit was redesigned, and the stability of the new cage was significantly improved.
Keywords: chemical structure, conformation, genetics oligomers stability
Published in DiRROS: 03.10.2024; Views: 280; Downloads: 65
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