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1.
Uncertainties in target volume delineation in radiotherapy : are they relevant and what can we do about them?
Barbara Šegedin, Primož Petrič, 2016, original scientific article

Abstract: Modern radiotherapy techniques enable delivery of high doses to the target volume without escalating dose to organs at risk, offering the possibility of better local control while preserving good quality of life. Uncertainties in target volume delineation have been demonstrated for most tumour sites, and various studies indicate that inconsistencies in target volume delineation may be larger than errors in all other steps of the treatment planning and delivery process. The aim of this paper is to summarize the degree of delineation uncertainties for different tumour sites reported in the literature and review the effect of strategies to minimize them. Conclusions. Our review confirmed that interobserver variability in target volume contouring represents the largest uncertainty in the process for most tumour sites, potentially resulting in a systematic error in dose delivery, which could influence local control in individual patients. For most tumour sites the optimal combination of imaging modalities for target delineation still needs to be determined. Strict use of delineation guidelines and protocols is advisable both in every day clinical practice and in clinical studies to diminish interobserver variability. Continuing medical education of radiation oncologists cannot be overemphasized, intensive formal training on interpretation of sectional imaging should be included in the program for radiation oncology residents.
Keywords: target volume, interobserver variability, delineation uncertainties, imaging
Published in DiRROS: 30.04.2024; Views: 23; Downloads: 4
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2.
Cell size dynamics and viability of cells exposed to hypotonic treatment and electroporation for electrofusion optimization
Marko Ušaj, Katja Trontelj, Rosana Hudej, Maša Kandušer, Damijan Miklavčič, 2009, original scientific article

Abstract: Background. Various electrofusion parameters have to be adjusted to obtain theoptimal electrofusion efficiency. Based on published data, good electrofusion conditions can be achieved with the hypotonic treatment. However, the duration of the hypotonic treatment before electroporation and buffer hypoosmolarity have to be adjusted in order to cause cell swelling, to avoid regulatory volume decrease and to preserve cell viability. The aims of our study were to determine cell size dynamics and viability of four different cell lines in hypotonic buffer and to study the influence of the electroporation on the selected cell line in hypotonic buffer. Materials and methods. Cell size dynamics of different cell lines exposed to hypotonic buffer and electroporation were analyzed by time-resolvedcell size measurements. The viability of hypotonically treated oržand electroporated cells was determined 24 h after the experiment by a modified crystal violet (CV) viability assay. Results. In our experimental conditions the hypotonic treatment at 100 mOsm was efficient for CHO, V79 and B16-F1 cell lines. The optimal duration of the treatment was between two and five minutes. On the other hand the same hypotonic treatment did not cause cell swelling of NS1 cells. Cell swelling was also observed after electroporation of B16-F1 in isotonic buffer and it was amplified when hypotonic buffer was used. In addition, the regulatory volume decrease was successfully inhibited with electroporation. Conclusions. Cell size dynamicsin hypotonic conditions should be studied for each cell line since they differ in their sensitivity to the hypotonic treatment. The inhibition of cell regulatory volume decrease by electroporation may be beneficial in achieving higher electrofusion efficiency. (Abstract truncated at 2000 characters)
Keywords: hypotonic treatment, cell swelling, regulatory volume decrease, cell size measurements, viability, electrofusion, electroporation
Published in DiRROS: 08.03.2024; Views: 117; Downloads: 35
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3.
Analiza kakovostne strukture okroglega lesa listavcev
Luka Krajnc, Domen Arnič, Peter Prislan, 2023, original scientific article

Abstract: The research presented in this study addressed the distribution of volume across different log grades in three hardwood species: European beech (Fagus sylvatica L.), sycamore maple (Acer pseudoplatanus L.) and English oak (Quercus robur L.). Standing trees were selected, marked, and measured. Afterwards the trees were felled and bucked into assortments according to national legislation regarding assortment grades and requirements for each assortment grade. Each individual assortment was measured and classified into one of the national log quality grades. Proportions of log volume with different grades within individual tree volumes were calculated and presented in this study. Differences were found in log grade volume distribution between different species and diameter classes. By following the national grading system for assortments, between 40% and 50% of total volume will be usable assortments in hardwoods
Keywords: logs, hardwoods, volume, quality, log grading
Published in DiRROS: 03.08.2023; Views: 306; Downloads: 162
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4.
Growing stock monitoring by European National Forest Inventories : historical origins, current methods and harmonisation
Thomas Gschwantner, Iciar Alberdi, Sébastien Bauwens, Susann Bender, Dragan Borota, Michal Bošela, Olivier Bouriaud, Johannes Breidenbach, Janis Donis, Christoph Fischer, Mitja Skudnik, 2022, original scientific article

Abstract: Wood resources have been essential for human welfare throughout history. Also nowadays, the volume of growing stock (GS) is considered one of the most important forest attributes monitored by National Forest Inventories (NFIs) to inform policy decisions and forest management planning. The origins of forest inventories closely relate to times of early wood shortage in Europe causing the need to explore and plan the utilisation of GS in the catchment areas of mines, saltworks and settlements. Over time, forest surveys became more detailed and their scope turned to larger areas, although they were still conceived as stand-wise inventories. In the 1920s, the first sample-based NFIs were introduced in the northern European countries. Since the earliest beginnings, GS monitoring approaches have considerably evolved. Current NFI methods differ due to country-specific conditions, inventory traditions, and information needs. Consequently, GS estimates were lacking international comparability and were therefore subject to recent harmonisation efforts to meet the increasing demand for consistent forest resource information at European level. As primary large-area monitoring programmes in most European countries, NFIs assess a multitude of variables, describing various aspects of sustainable forest management, including for example wood supply, carbon sequestration, and biodiversity. Many of these contemporary subject matters involve considerations about GS and its changes, at different geographic levels and time frames from past to future developments according to scenario simulations. Due to its historical, continued and currently increasing importance, we provide an up-to-date review focussing on large-area GS monitoring where we i) describe the origins and historical development of European NFIs, ii) address the terminology and present GS definitions of NFIs, iii) summarise the current methods of 23 European NFIs including sampling methods, tree measurements, volume models, estimators, uncertainty components, and the use of air- and space-borne data sources, iv) present the recent progress in NFI harmonisation in Europe, and v) provide an outlook under changing climate and forest-based bioeconomy objectives.
Keywords: forest history, natural resources, sustainability, timber volume, sampling, remote sensing, bioeconomy, climate change
Published in DiRROS: 14.12.2021; Views: 776; Downloads: 552
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5.
Temporal changes in the epidemiology, management, and outcome from acute respiratory distress syndrome in European intensive care units : a comparison of two large cohorts
Yasser Sakr, Bruno François, Jordi Solé-Violan, Katarzyna Kotfis, Ulrich Jaschinski, Angel Estella, Marc Leone, Stephan M. Jakob, Xavier Wittebole, Luis E. Fontes, Viktorija Tomič, 2021, original scientific article

Abstract: Background. Mortality rates for patients with ARDS remain high. We assessed temporal changes in the epidemiology and management of ARDS patients requiring invasive mechanical ventilation in European ICUs. We also investigated the association between ventilatory settings and outcome in these patients. Methods. This was a post hoc analysis of two cohorts of adult ICU patients admitted between May 1–15, 2002 (SOAP study, n = 3147), and May 8–18, 2012 (ICON audit, n = 4601 admitted to ICUs in the same 24 countries as the SOAP study). ARDS was defined retrospectively using the Berlin definitions. Values of tidal volume, PEEP, plateau pressure, and FiO2 corresponding to the most abnormal value of arterial PO2 were recorded prospectively every 24 h. In both studies, patients were followed for outcome until death, hospital discharge or for 60 days. Results. The frequency of ARDS requiring mechanical ventilation during the ICU stay was similar in SOAP and ICON (327[10.4%] vs. 494[10.7%], p = 0.793). The diagnosis of ARDS was established at a median of 3 (IQ: 1–7) days after admission in SOAP and 2 (1–6) days in ICON. Within 24 h of diagnosis, ARDS was mild in 244 (29.7%), moderate in 388 (47.3%), and severe in 189 (23.0%) patients. In patients with ARDS, tidal volumes were lower in the later (ICON) than in the earlier (SOAP) cohort. Plateau and driving pressures were also lower in ICON than in SOAP. ICU (134[41.1%] vs 179[36.9%]) and hospital (151[46.2%] vs 212[44.4%]) mortality rates in patients with ARDS were similar in SOAP and ICON. High plateau pressure (> 29 cmH2O) and driving pressure (> 14 cmH2O) on the first day of mechanical ventilation but not tidal volume (> 8 ml/kg predicted body weight [PBW]) were independently associated with a higher risk of in-hospital death. Conclusion. The frequency of and outcome from ARDS remained relatively stable between 2002 and 2012. Plateau pressure > 29 cmH2O and driving pressure > 14 cmH2O on the first day of mechanical ventilation but not tidal volume > 8 ml/kg PBW were independently associated with a higher risk of death. These data highlight the continued burden of ARDS and provide hypothesis-generating data for the design of future studies.
Keywords: respiratory insufficiency, artificial respiration, tidal volume, airway pressures, driving pressure
Published in DiRROS: 16.06.2021; Views: 1187; Downloads: 552
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6.
Factors influencing growth of mature sycamore trees (Acer pseudoplatanus L.) on carbonate bedrock
Aleš Kadunc, Marijan Kotar, 2005, original scientific article

Abstract: This paper presents the growth potential of sycamore (Acer pseudoplatanus L.) on four types of forest sites located on carbonate bedrock. The research covers sycamore sites (Aceri-Fraxinetum ill.), beech sites (Lamio orvalae-Fagetum), beech sites planted with Norway spruce, and silver fir-beechsites (Omphalodo-Fagetum aceretosum). The analyses for each forest type were carried out on five plots. Our aim was to determine the effect of site factors and stand parameters on sycamore growth. Site productivity (SP) is positively correlated with soil depth, coarse silt percentage in the cambichorizon, the content of phosphorus in leaves and, partly, with potassium. The effect of nitrogen supply on height growth or SP was not confirmed. Furthermore, height growth on sites with a higher rate of nutrient cycling, higher macronutrient supply and higher sand percentage in the cambic horizon is significantly faster. As to the growth of basal area, in addition to positive dependences of crown size, many other correlations with site factors were confirmed.
Keywords: beech stand, growing stock, stand value, current volume increment, current value increment, quality structure, social collective
Published in DiRROS: 12.07.2017; Views: 4431; Downloads: 1816
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