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1.
Retrospective survey of Dickeya fangzhongdai using a novel validated real-time PCR assay
Špela Alič, Katarina Bačnik, Tanja Dreo, 2024, original scientific article

Abstract: Dickeya fangzhongdai, an aggressive plant pathogen, causes symptoms on a variety of crops and ornamental plants including bleeding canker of Asian pear trees. Historical findings stress the need for a specific detection tool for D. fangzhongdai to prevent overlooking the pathogen or assigning it to general Dickeya spp. Therefore, a qualitative real-time PCR for specific detection of D. fangzhongdai has been developed and validated. The developed assay shows selectivity of 100%, diagnostic sensitivity of 76% and limit of detection with 95% confidence interval in plant matrices ranging from 311 to 2,275 cells/mL of plant extracts. The assay was successfully used in a retrospective survey of selected host plants of relevance to Europe and environmental niches relevant to D. fangzhongdai. Samples of potato tubers and plants, plants from the Malinae subtribe (apple, pear, quince, and Asian pear tree) and fresh surface water from Slovenia were analyzed. D. fangzhongdai was not detected in any plant samples, however, 12% of surface water samples were found to be positive.
Keywords: molecular testing, diagnostics, plant pathogen, real-time PCR, Dickeya, survey, water
Published in DiRROS: 07.08.2024; Views: 117; Downloads: 99
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2.
Cucujus cinnaberinus (Scopoli, 1763) at its terra typica in Slovenia : historical overview, distribution patterns and habitat selection
Al Vrezec, Špela Ambrožič Ergaver, Andrej Kobler, Andrej Kapla, Maarten De Groot, 2017, original scientific article

Abstract: The saproxylic beetle, Cucujus cinnaberinus, has received increasing research attention in Europe since the adoption of the Habitats Directive and establishment of the Natura 2000 network. The history of the species has been investigated as well as the influence of abiotic and biotic variables on the distribution of C. cinnaberinus in Slovenia which is at the limit of its range and also terra typica for the species. The species was first described in 1763 by Joannes A. Scopoli in Carniola, a duchy of the Habsburg Monarchy. Today, most of the territory of Carniola is situated within Slovenia. C. cinnaberinus is particularly common in the eastern part of the country, but very scarce in the mountainous western part. According to historical and recent distribution patterns of C. cinnaberinus in the former Carniolan territory, the region of Ribnica-Kočevje in southern Slovenia is proposed as the most probable type locality of the species. Although the bulk of the C. cinnaberinus population in Slovenia is confined to the lowlands, the species has been found up to 1095 m a.s.l., albeit at a much lower abundance due to the influence of climate and forest structure. Although C. cinnaberinus is a quite an opportunistic species regarding host tree selection, it has been shown to exhibit a preference for Tilia, Populus and Robinia. It is suspected that the high abundance of C. cinnaberinus in lowland floodplain forests is due to the recent human-induced increase in preferred fast-growing and short-lived host trees, i.e. the planting of poplar trees and spread of invasive Black Locust (Robinia pseudoacacia) after the 1960s. In contrast, in montane forests, preferred host trees (e.g. Tilia) represent < 1 % of all growing stock. Although montane C. cinnaberinus populations are rare, they could still be important for the conservation of the species, since montane habitats cover the largest area within the species’ distribution range.
Keywords: saproxylic beetle, Natura 2000, type locality, Carniola, altitudinal distribution, host tree selection, macrohabitat, large-scale survey
Published in DiRROS: 24.07.2024; Views: 562; Downloads: 120
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3.
Temperature effects explain continental scale distribution of cyanobacterial toxins
Evanthia Mantzouki, Tina Eleršek, 2018, original scientific article

Abstract: nsight into how environmental change determines the production and distribution of cyanobacterial toxins is necessary for risk assessment. Management guidelines currently focus on hepatotoxins (microcystins). Increasing attention is given to other classes, such as neurotoxins (e.g., anatoxin-a) and cytotoxins (e.g., cylindrospermopsin) due to their potency. Most studies examine the relationship between individual toxin variants and environmental factors, such as nutrients, temperature and light. In summer 2015, we collected samples across Europe to investigate the effect of nutrient and temperature gradients on the variability of toxin production at a continental scale. Direct and indirect effects of temperature were the main drivers of the spatial distribution in the toxins produced by the cyanobacterial community, the toxin concentrations and toxin quota. Generalized linear models showed that a Toxin Diversity Index (TDI) increased with latitude, while it decreased with water stability. Increases in TDI were explained through a significant increase in toxin variants such as MC-YR, anatoxin and cylindrospermopsin, accompanied by a decreasing presence of MC-LR. While global warming continues, the direct and indirect effects of increased lake temperatures will drive changes in the distribution of cyanobacterial toxins in Europe, potentially promoting selection of a few highly toxic species or strains.
Keywords: microcystin, anatoxin, cylindrospermopsin, temperature, direct effects, indirect effects, spatial distribution, European Multi Lake Survey
Published in DiRROS: 24.07.2024; Views: 124; Downloads: 101
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4.
On-farm experiences shape farmer knowledge, perceptions of pollinators, and management practices
Julia Osterman, Patricia Landaverde-González, Michael P. D. Garratt, Megan Gee, Yael Mandelik, Aleksandra Langowska, Marcos Miñarro, Lorna J. Cole, Maxime Eeraerts, Danilo Bevk, 2021, original scientific article

Abstract: Mitigating pollinator declines in agriculturally dominated landscapes to safeguard pollination services requires the involvement of farmers and their willingness to adopt pollinator-friendly management. However, farmer knowledge, perceptions, and actions to support on-farm pollinators and their alignment with science-based knowledge and recommendations are rarely evaluated. To close this knowledge gap, we interviewed 560 farmers from 11 countries around the world, cultivating at least one of four widely grown pollinator-dependent crops (apple, avocado, kiwifruit, oilseed rape). We particularly focused on non-bee crop pollinators which, despite being important pollinators of many crops, received less research attention than bees. We found that farmers perceived bees to be more important pollinators than other flower-visiting insects. However, around 75% of the farmers acknowledged that non-bees contributed to the pollination of their crops, seeing them as additional pollinators rather than substitutes for bees. Despite farmers rating their own observations as being most important in how they perceived the contribution of different crop pollinator taxa, their perception aligned closely with results from available scientific studies across crops and countries. Farmer perceptions were also linked with their pollinator management practices, e.g. farmers who used managed bees for crop pollination services (more than half the farmers) rated these managed bees as particularly important. Interestingly, their willingness to establish wildflower strips or manage hedgerows to enhance pollinator visitation was linked to their ecological knowledge of non-bees or to government subsidies. Farmers adapted practices to enhance pollination services depending on the crop, which indicates an understanding of differences in the pollination ecology of crops. Almost half of the farmers had changed on-farm pollination management in the past 10 years and farm practices differed greatly between countries. This suggests integrated crop pollination measures are being adapted by farmers to reach best pollinator management practices. Our findings highlight the importance of studying local knowledge as a key to co-design locally-adapted measures to facilitate pollinator-integrated food production as ecological intensification tools.
Keywords: conservation, crop pollination, ecological intensification, farmer knowledge, local knowledge, survey
Published in DiRROS: 19.07.2024; Views: 126; Downloads: 113
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5.
Stakeholders' views on the global guidelines for the sustainableuse of non-native trees
Ana Novoa, Giovanni Vimercati, Giuseppe Brundu, David M. Richardson, Urs Schaffner, Antonio Brunori, Thomas Campagnaro, Susan Canavan, Laura Celesti-Grapow, Michele de Sá Dechoum, Marjana Westergren, 2024, original scientific article

Abstract: 1. A large number of non-native trees (NNTs) have been introduced globally andwidely planted, contributing significantly to the world's economy. Although someof these species present a limited risk of spreading beyond their planting sites, agrowing number of NNTs are spreading and becoming invasive leading to diversenegative impacts on biodiversity, ecosystem functions and human well- being. Tohelp minimize the negative impacts and maximize the economic benefits of NNTs,Brundu et al. developed eight guidelines for the sustainable use of NNTs glob-ally—the Global Guidelines for the Use of NNTs (GG-NNTs).2. Here, we used an online survey to assess perceptions of key stakeholders to-wards NNTs, and explore their knowledge of and compliance with the GG-NNTs.3. Our results show that stakeholders are generally aware that NNTs can providebenefits and cause negative impacts, often simultaneously and they consider thattheir organization complies with existing regulations and voluntary agreementsconcerning NNTs. However, they are not aware of or do not apply most of theeight recommendations included in the GG-NNTs.4. We conclude that effectively managing invasions linked to NNTs requires bothmore communication efforts using an array of channels for improving stakeholderawareness and implementation of simple measures to reduce NNT impacts (e.g. via GG-NNTs), and a deeper understanding of the barriers and reluctance ofstakeholders to manage NNT invasions.
Keywords: agroforestry, alien species, forestry, invasion risk, online survey, ornamental trees, perceptions, stakeholder engagement, sustainability, tree invasions
Published in DiRROS: 21.06.2024; Views: 178; Downloads: 130
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6.
Ascertaining the knowledge of the general public and stakeholders in the forestry sector to invasive alien species - a Pan-European study
Flavius Balacenoiu, Anže Japelj, Iris Bernardinelli, Bastien Castagneyrol, György Csóka, Milka Glavendekić, Gernot Hoch, Boris Hrašovec, Silvija Krajter Ostoić, Márton Paulin, David Williams, Johan Witters, Maarten De Groot, 2023, original scientific article

Abstract: Against the background of the phenomenon of globalisation, which has increasingly intensified in recent decades, invasive alien species (IAS) have led to biological invasions that have resulted in multiple negative effects on economies, human health, and especially on the environment. In order to control invasive alien species, preventive actions are considered the most effective methods. In this context, society can actively participate in the process of early detection and preventing the spread of these organisms, but there is a need to raise public awareness. In order for this process to take place in the most efficient way, it is necessary to initially evaluate the knowledge of the general public to IAS. Through a questionnaire that was circulated in ten European countries and had over two thousand respondents, this study aimed to investigate the level of knowledge of some stakeholders in the forestry sector regarding IAS. The results showed that a vast majority of respondents who participated in the study had heard about IAS and provided a correct definition of these organisms. Most of the respondents in this study heard for the first time about IAS from school, the Internet, or journal articles. Data analysis also showed that stakeholders in the forestry sector (foresters, forest owners, and members of environmental NGOs) were more likely than the other respondents to be aware of the impact of IAS. The results of this study offer an insight to researchers and decision makers assessing the differences of opinion regarding invasive alien species, and the necessary steps that could be adopted in the process of raising awareness in society.
Keywords: citizen science, online survey, biosecurity
Published in DiRROS: 09.03.2023; Views: 854; Downloads: 349
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7.
Geographical and temporal diversity of ‘Candidatus Phytoplasma solani' in wine-growing regions in Slovenia and Austria
Nataša Mehle, Sanda Kavčič, Sara Mermal, Sara Vidmar, Maruša Pompe Novak, Monika Riedle-Bauer, Günter Brader, Aleš Kladnik, Marina Dermastia, 2022, original scientific article

Abstract: As the causal agent of the grapevine yellows disease Bois noir, ‘Candidatus Phytoplasma solani’ has a major economic impact on grapevines. To improve the control of Bois noir, it is critical to understand the very complex epidemiological cycles that involve the multiple “Ca. P. solani” host plants and insect vectors, of which Hyalesthes obsoletus is the most important. In the present study, multiple genotyping of the tuf, secY, stamp, and vmp1 genes was performed. This involved archived grapevine samples that were collected during an official survey of grapevine yellows throughout the wine-growing regions of Slovenia (from 2003 to 2016), plus samples from Austrian grapevines, stinging nettle, field bindweed, and insect samples (collected from 2012 to 2019). The data show that the tuf-b2 type of the tuf gene has been present in eastern Slovenia since at least 2003. The hypotheses that the occurrence of the haplotypes varies due to the geographical position of Slovenia on the Italian–Slovenian Karst divide and that the haplotypes are similar between Slovenian and Austrian Styria were confirmed. The data also show haplotype changes for host plants and H. obsoletus associated with ‘Ca. P. solani,’ which might be linked to new epidemiological cycles of this phytoplasma that involve not just new plant sources and new insect vectors, but also climate and land-use changes.
Keywords: Bois noir, genotyping, ‘Ca. P. solani’, tuf gene, secY, survey, tuf-b2, stamp
Published in DiRROS: 10.06.2022; Views: 1043; Downloads: 668
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8.
Corythucha arcuata (Say, 1832) (Hemiptera, Tingidae) in its invasive range in Europe : perception, knowledge and willingness to act in foresters and citizens
Flavius Balacenoiu, Anže Japelj, Iris Bernardinelli, Bastien Castagneyrol, György Csóka, Milka Glavendekić, Gernot Hoch, Boris Hrašovec, Silvija Krajter Ostoić, Márton Paulin, David Williams, Johan Witters, Maarten De Groot, 2021, original scientific article

Abstract: The oak lace bug (OLB) Corythucha arcuata (Say, 1832) is an invasive alien species (IAS) that potentially could have many negative impacts on European oak health. Certain measures can be applied to counteract these effects. However, these measures may not be acceptable for forest managers or other stakeholder groups, such as private forest owners, environmental NGOs or the general public. Thereby, we set out to study the perception and knowledge of foresters and other stakeholders on the health status of European oak forests affected by oak lace bug and to investigate what forest health management measures would be acceptable to these target groups. An online survey questionnaire was designed and distributed via social networks, as well as professional networks via e-mails. The survey questionnaire was completed by 2084 respondents from nine European countries: Austria, Croatia, Belgium, France, Hungary, Italy, Romania, Serbia and Slovenia. Even though only a little over 60% of respondents reported they had noticed the discolouration of oak leaves caused by OLB, almost all (93%) considered it to be a problem. As respondents come from a country where C. arcuata is widespread and established, people%s general knowledge and awareness of OLB began to increase. The survey revealed that foresters thought that the insect affected photosynthesis, acorn crop and the aesthetics of the trees, but cannot cause death of trees. However, they assume that the value of the wood would decrease (this fact is also supported by the respondents who are connected to an environmental NGO), but that OLB does not affect property value. However, forest owners claim that the value of the property can be affected and that people would avoid entering the forest. In terms of potential control methods, respondents preferred biological or mechanical measures over chemical ones. We consider this study to be a good basis for further research on the topic of perception, knowledge and attitudes related to OLB since we can expect that the IAS, such as OLB, will certainly spread to European countries that were not included in this survey.
Keywords: attitude, citizen knowledge, Europe, forest health, IAS control measures, invasive alien species, survey
Published in DiRROS: 28.10.2021; Views: 1405; Downloads: 854
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9.
Prevalence of and factors associated with healthcare-associated infections in Slovenian acute care hospitals : results of the third national survey
Irena Klavs, Mojca Serdt, Aleš Korošec, Tatjana Lejko-Zupanc, Blaž Pečavar, 2019, original scientific article

Abstract: Introduction. In the third Slovenian national healthcare-associated infections (HAIs) prevalence survey, conducted within the European point prevalence survey of HAIs and antimicrobial use in acute care hospitals, we estimated the prevalence of all types of HAIs and identified factors associated with them. Methods. Patients were enrolled into a one-day cross-sectional study in November 2017. Descriptive analyses were performed to describe the characteristics of patients, their exposure to invasive procedures and the prevalence of different types of HAIs. Univariate and multivariate analyses of association of having at least one HAI with possible risk factors were performed to identify risk factors. Results. Among 5,743 patients, 4.4% had at least one HAI and an additional 2.2% were still treated for HAIs on the day of the survey, with a prevalence of HAIs of 6.6%. The prevalence of pneumoniae was the highest (1.8%), followed by surgical site infections (1.5%) and urinary tract infections (1.2%). Prevalence of blood stream infections was 0.3%. In intensive care units (ICUs), the prevalence of patients with at least one HAI was 30.6%. Factors associated with HAIs included central vascular catheter (adjusted odds ratio [aOR] 4.1; 95% confidence intervals [CI]: 3.1–5.4), peripheral vascular catheter (aOR 3.0; 95% CI: 2.3–3.9), urinary catheter (aOR 1.8; 95% CI: 1.4–2.3). Conclusions. The prevalence of HAIs in Slovenian acute care hospitals in 2017 was substantial, especially in ICUs. HAIs prevention and control is an important public health priority. National surveillance of HAIs in ICUs should be developed to support evidence-based prevention and control.
Keywords: healthcare-associated infections, prevalence, survey, risk factors, Slovenia
Published in DiRROS: 16.10.2020; Views: 2692; Downloads: 978
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10.
First record of the Greek clouded yellow Colias aurorina Herrich-Schäffer, 1850 (Lepidoptera: Pieridae) for Albania
Rudi Verovnik, Miloš Popović, 2013, other scientific articles

Keywords: diversity, faunistics, field survey
Published in DiRROS: 11.07.2017; Views: 3842; Downloads: 1588
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