1. Highly specific qPCR and amplicon sequencing method for detection of quarantine citrus pathogen Phyllosticta citricarpaapplicable for air samplesJanja Zajc, Zala Kogej Zwitter, Sara Fišer, Cene Gostinčar, Antonio Vicent, Anaïs Galvañ Domenech, Luca Riccioni, Neil Boonham, Maja Ravnikar, Polona Kogovšek, 2023, original scientific article Abstract: The fungus Phyllosticta citricarpa is a quarantine pathogen in the EU and is of high economic importance in many parts of the world where favourable climate conditions drive the development of citrus black spot (CBS) disease. Disease symptoms include necrotic lesions on leaves and fruits. Low disease pressure can reduce crop market-ability, while higher disease pressure can cause premature fruit drop, significantly increasing crop losses. The wind-dispersed spores of P. citricarpa are especially prob-lematic for rapid pathogen dispersal, but also provide an opportunity for early detec-tion of the disease spreading into a new area. In this study we have developed and validated a quantitative PCR (qPCR) assay based on the TEF1-α sequence. Specificity testing demonstrated that it is currently the only qPCR assay that does not cross- react with closely related Phyllosticta species. The assay is sensitive and can detect a single copy of the TEF1 gene in a reaction, it is highly repeatable and reproducible and can be used for testing of the sticky tapes from spore traps as well as citrus fruit sam-ples. High-throughput sequencing (HTS) of the DNA barcodes ITS1 and TEF1 was also explored for the detection and discrimination of P. citricarpa. The limit of detection of the HTS was 1000 spores on a daily spore trap tape. This study makes an important improvement to the diagnostics of the CBS and the methods developed can also be applied to improve the surveillance and early detection of the pathogen when linked to spore samplers in the field.
Keywords: detection, fungal spore sampling, internal transcribed region (ITS), translation elongation factor 1-α (TEF1)
Published in DiRROS: 12.07.2024; Views: 11; Downloads: 2
 Full text (1,49 MB)
This document has many files! More... |
2. Lastnosti lesa iz rudnika SitarjevecMiha Humar, Boštjan Lesar, Davor Kržišnik, Andreja Pondelak, Andrijana Sever Škapin, Angela Balzano, José Gonçalves, 2024, original scientific article Abstract: Rudarska tradicija v Litiji, segajoča v staro železno dobo, je vključevala intenzivno uporabo lesa v rudnikih, še posebej za podporo in zaščito rovov. Rudnik Sitarjevec je bil znova odprt za turizem leta 2017, in v letu 2021 so odprli glavni rov. Les ostaja ključen material v rudnikih, čeprav so ga v preteklosti nadomeščali z drugimi materiali. Uporabljeni les je izpostavljen razkroju zaradi visoke vlažnosti in gliv, kot je bela hišna goba. Ta gliva lahko povzroči razgradnjo lesa in je pogosta v vlažnih okoljih rudnikov. Obstoj gliv je pomemben, saj lahko vplivajo na obiskovalce rudnika. Visoka relativna zračna vlažnost (96,6 %) in stalna temperatura (10,1 °C) v rudniku ustvarjata razmere, ki so ugodne za rast gliv, vendar pa relativno nizka temperatura ni omejujoč dejavnik za razgradnjo lesa. Koncentracija glivnih spor v rudniku je visoka in je razložena z razširjenostjo gliv v samem rudniku. Poleg tega smo opazili, da je v lesu veliko anorganskih onesnaževal ter veliko kristalov.
Keywords: razkroj, bela hišna goba, težke kovine, kristali, spore
Published in DiRROS: 21.06.2024; Views: 232; Downloads: 67
Full text (4,45 MB) |
3. Effect of earthworms on mycorrhization, root morphology and biomass of silver fir seedlings inoculated with black summer truffle (Tuber aestivum Vittad.)Tina Unuk Nahberger, Niccolo G. M. Benucci, Tine Grebenc, Hojka Kraigher, 2021, original scientific article Abstract: Species of the genus Tuber have gained a lot of attention in recent decades due to their aromatic hypogenous fruitbodies, which can bring high prices on the market. The tendency in truffle production is to infect oak, hazel, beech, etc. in greenhouse conditions. We aimed to show whether silver fir (Abies alba Mill.) can be an appropriate host partner for commercial mycorrhization with truffles, and how earthworms in the inoculation substrate would affect the mycorrhization dynamics. Silver fir seedlings inoculated with Tuber. aestivum were analyzed for root system parameters and mycorrhization, how earthworms affect the bare root system, and if mycorrhization parameters change when earthworms are added to the inoculation substrate. Seedlings were analyzed 6 and 12 months after spore inoculation. Mycorrhization with or without earthworms revealed contrasting effects on fine root biomass and morphology of silver fir seedlings. Only a few of the assessed fine root parameters showed statistically significant response, namely higher fine root biomass and fine root tip density in inoculated seedlings without earthworms 6 months after inoculation, lower fine root tip density when earthworms were added, the specific root tip density increased in inoculated seedlings without earthworms 12 months after inoculation, and general negative effect of earthworm on branching density. Silver fir was confirmed as a suitable host partner for commercial mycorrhization with truffles, with 6% and 35% mycorrhization 6 months after inoculation and between 36% and 55% mycorrhization 12 months after inoculation. The effect of earthworms on mycorrhization of silver fir with Tuber aestivum was positive only after 6 months of mycorrhization, while this effect disappeared and turned insignificantly negative after 12 months due to the secondary effect of grazing on ectomycorrhizal root tips.
Keywords: mycorrhiza, truffles, silver fir, inoculation, earthworms, spore inoculation
Published in DiRROS: 22.03.2021; Views: 1161; Downloads: 789
Full text (1,32 MB)
This document has many files! More... |
