1. Combined use of chlorophyll a and phycocyanin fluorescence sensors for quantification and differentiation of phytoplankton : a useful approach for small surface water bodiesTinkara Rozina, Tina Eleršek, Maja Zupančič Justin, Andrej Meglič, 2018, original scientific article Abstract: Sensors based on in vivo measurements of photosynthetic pigments fluorescence enable real-time phytoplankton monitoring with high spatial and temporal resolution. A combination of chlorophyll a (CHL) and phycocyanin (PC) fluorescence sensors was used for phytoplankton quantification and differentiation in two small water bodies, Koseze Pond and pond in Hotinja vas. The high correlation of CHL and PC fluorescence signals with biovolume was confirmed during the two-year monitoring in anatural pond environment in spite of a seasonal succession of the phytoplankton. Additionally, disturbances of the sensors were investigated. Water bodies containing predominantly algae yielded false positive signals of the PC sensor, which reached up to 1% of the intensity of the CHL signal. Similarly, underestimated counts of cyanobacteria measured with CHL fluorescence sensor can be adjusted using PC fluorescence sensor. Keywords: small water bodies, algae, cyanobacteria, fluorescence sensors, biovolume Published in DiRROS: 01.08.2024; Views: 113; Downloads: 76
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2. Fine particulate matter (PM2.5) exposure assessment among active daily commuters to induce behaviour change to reduce air pollutionAnja Ilenič, Alenka Mauko Pranjić, Nina Zupančič, Radmila Milačič, Janez Ščančar, 2023, original scientific article Abstract: Fine particulate matter (PM2.5), a detrimental urban air pollutant primarily emitted by traffic and biomass burning, poses disproportionately significant health risks at relatively limited exposure during commuting. Previous studies have mainly focused on fixed locations when assessing PM2.5 exposure, while neglecting pedestrians and cyclists, who often experience higher pollution levels. In response, this research aimed to independently validate the effectiveness of bicycle-mounted low-cost sensors (LCS) adopted by citizens, evaluate temporal and spatial PM2.5 exposure, and assess associated health risks in Ljubljana, Slovenia. The LCS quality assurance results, verified by co-location field tests by air quality monitoring stations (AQMS), showed comparable outcomes with an average percentage difference of 21.29 %, attributed to humidity-induced nucleation effects. The colder months exhibited the highest air pollution levels (μ = 32.31 μg/m3) due to frequent thermal inversions and weak wind circulation, hindering vertical air mixing and the adequate dispersion of pollutants. Additionally, PM2.5 levels in all sampling periods were lowest in the afternoon (μ = 12.09 μg/m3) and highest during the night (μ = 61.00 μg/m3) when the planetary boundary layer thins, leading to the trapping of pollutants near the surface, thus significantly affecting diurnal and seasonal patterns. Analysis of exposure factors revealed that cyclists were approximately three times more exposed than pedestrians. However, the toxicological risk assessment indicated a minimal potential risk of PM2.5 exposure. The collaborative integration of data from official AQMS and LCS can enhance evidence-based policy-making processes and facilitates the realignment of effective regulatory frameworks to reduce urban air pollution. Keywords: air pollution monitoring, PM2.5 exposure, citizen science, bicycle-mounted low-cost sensors Published in DiRROS: 30.01.2024; Views: 433; Downloads: 180
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3. Comprehensive permanent remote monitoring system of a multi-span highway bridgeAndrej Anžlin, Uroš Bohinc, Doron Hekič, Maja Kreslin, Jan Kalin, Aleš Žnidarič, 2021, published scientific conference contribution Abstract: As part of the reconstruction of a multi-span viaduct on a Slovenian highway, a permanent remote monitoring system with over 200 sensors was established. Several parameters are monitored on different parts of the viaduct by means of temperature sensors, accelerometers, strain gauges, long-gauge deformation and Fibre Bragg Grating (FBG) sensors. In this way strains, frequencies and temperatures on external prestressed beam cables, carbon fibre rebarsused for the flexural strengthening of a deck overhang, pier caps and prestressed beams are measured and stored into the on-site central data acquisition system. This paper presents architecture of the permanent bridge monitoring system and preliminary results of the measurements. Keywords: permanent monitoring, structural health monitoring, bridge WIM, sensors, viaduct Published in DiRROS: 22.01.2024; Views: 521; Downloads: 239
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4. SONAR, a nursing activity dataset with inertial sensorsOrhan Konak, Lucas Liebe, Kirill Postnov, Franz Sauerwald, Hristijan Gjoreski, Mitja Luštrek, Bert Arnrich, 2023, other scientific articles Abstract: Accurate and comprehensive nursing documentation is essential to ensure quality patient care. To streamline this process, we present SONAR, a publicly available dataset of nursing activities recorded using inertial sensors in a nursing home. The dataset includes 14 sensor streams, such as acceleration and angular velocity, and 23 activities recorded by 14 caregivers using five sensors for 61.7 hours. The caregivers wore the sensors as they performed their daily tasks, allowing for continuous monitoring of their activities. We additionally provide machine learning models that recognize the nursing activities given the sensor data. In particular, we present benchmarks for three deep learning model architectures and evaluate their performance using different metrics and sensor locations. Our dataset, which can be used for research on sensor-based human activity recognition in real-world settings, has the potential to improve nursing care by providing valuable insights that can identify areas for improvement, facilitate accurate documentation, and tailor care to specific patient conditions. Keywords: nursing documentation, nursing activities, SONAR, sensors Published in DiRROS: 11.12.2023; Views: 379; Downloads: 207
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5. Radiation induced upregulation of DNA Sensing pathways is cell-type dependent and can mediate the off-target effectsTanja Jesenko, Maša Omerzel, Boštjan Markelc, Gregor Serša, Katarina Žnidar, Loree C. Heller, Maja Čemažar, 2020, original scientific article Keywords: DNA sensors, irradiation, immunostimulation Published in DiRROS: 10.10.2022; Views: 639; Downloads: 353
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6. In vitro and in vivo correlation of skin and cellular responses to nucleic acid deliveryMaša Omerzel, Katarina Žnidar, A. Sales Conniff, Tanja Jesenko, Boštjan Markelc, Jared Tur, Nina Semenova, Kristopher Kohena, Simona Kranjc Brezar, Loree C. Heller, Maja Čemažar, 2022, original scientific article Abstract: Skin, the largest organ in the body, provides a passive physical barrier against infection and contains elements of the innate and adaptive immune systems. Skin consists of various cells, including keratinocytes, fibroblasts, endothelial cells and immune cells. This diversity of cell types could be important to gene therapies because DNA transfection could elicit different responses in different cell types. Previously, we observed the upregulation and activation of cytosolic DNA sensing pathways in several non-tumor and tumor cell types as well in tumors after the electroporation (electrotransfer) of plasmid DNA (pDNA). Based on this research and the innate immuno- genicity of skin, we correlated the effects of pDNA electrotransfer to fibroblasts and keratinocytes to mouse skin using reverse transcription real-time PCR (RT-qPCR) and several types of protein quantification. After pDNA electrotransfer, the mRNAs of the putative DNA sensors DEAD (AspGlu-Ala-Asp) box polypeptide 60 (Ddx60), absent in melanoma 2 (Aim2), Z-DNA binding protein 1 (Zbp1), interferon activated gene 202 (Ifi202), and interferon-inducible protein 204 (Ifi204) were upregulated in keratinocytes, while Ddx60, Zbp1 and Ifi204 were upregulated in fibroblasts. Increased levels of the mRNAs and proteins of several cytokines and chemokines were detected and varied based on cell type. Mouse skin experiments in vivo confirmed our in vitro results with increased expression of putative DNA sensor mRNAs and of the mRNAs and proteins of several cytokines and chemokines. Keywords: DNA sensors, cytokines, electrotransfer, skin Published in DiRROS: 06.09.2022; Views: 771; Downloads: 416
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8. Quantification of the link between timed up-and-go test subtasks and contractile muscle propertiesAndreas Ziegl, Dieter Hayn, Peter Kastner, Ester Fabiani, Boštjan Šimunič, Kerstin Löffler, Lisa Weidinger, Bianca Brix, Nandu Goswami, Günter Schreier, 2021, original scientific article Abstract: Frailty and falls are a major public health problem in older adults. Muscle weakness of the lower and upper extremities are risk factors for any, as well as recurrent falls including injuries and fractures. While the Timed Up-and-Go (TUG) test is often used to identify frail members and fallers, tensiomyography (TMG) can be used as a non-invasive tool to assess the function of skeletal muscles. In a clinical study, we evaluated the correlation between the TMG parameters of the skeletal muscle contraction of 23 elderly participants (22 f, age 86.74 % 7.88) and distance-based TUG test subtask times. TUG tests were recorded with an ultrasonic-based device. The sit-up and walking phases were significantly correlated to the contraction and delay time of the muscle vastus medialis (% = 0.55%0.80, p < 0.01). In addition, the delay time of the muscles vastus medialis (% = 0.45, p = 0.03) and gastrocnemius medialis (% = %0.44, p = 0.04) correlated to the sit-down phase. The maximal radial displacements of the biceps femoris showed significant correlations with the walk-forward times (% = %0.47, p = 0.021) and back (% = %0.43, p = 0.04). The association of TUG subtasks to muscle contractile parameters, therefore, could be utilized as a measure to improve the monitoring of elderly people%s physical ability in general and during rehabilitation after a fall in particular. TUG test subtask measurements may be used as a proxy to monitor muscle properties in rehabilitation after long hospital stays and injuries or for fall prevention. Keywords: timed up-and-go test, tensiomyography, biomedical engineering, biomedical sensors, health Published in DiRROS: 18.10.2021; Views: 960; Downloads: 878
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