951. Jellyfish-associated microbiome in the marine environment : exploring its biotechnological potentialTinkara Tinta, Tjaša Kogovšek, Katja Klun, Alenka Malej, Gerhard J. Herndl, Valentina Turk, 2019, review article Abstract: Despite accumulating evidence of the importance of the jellyfish-associated microbiome to jellyfish, its potential relevance to blue biotechnology has only recently been recognized. In this review, we emphasize the biotechnological potential of host–microorganism systems and focus on gelatinous zooplankton as a host for the microbiome with biotechnological potential. The basic characteristics of jellyfish-associated microbial communities, the mechanisms underlying the jellyfish-microbe relationship, and the role/function of the jellyfish-associated microbiome and its biotechnological potential are reviewed. It appears that the jellyfish-associated microbiome is discrete from the microbial community in the ambient seawater, exhibiting a certain degree of specialization with some preferences for specific jellyfish taxa and for specific jellyfish populations, life stages, and body parts. In addition, different sampling approaches and methodologies to study the phylogenetic diversity of the jellyfish-associated microbiome are described and discussed. Finally, some general conclusions are drawn from the existing literature and future research directions are highlighted on the jellyfish-associated microbiome.
Keywords: Cnidaria, Ctenophora, biodiversity, bioactive compounds, microbial communities, blue biotechnology
Published in DiRROS: 06.08.2024; Views: 394; Downloads: 276
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952. Marine environmental plastic pollution : mitigation by microorganism degradation and recycling valorizationJuliana Oliveira, Afonso Belchior, Verônica D. Da Silva, Ana Rotter, Željko Petrovski, Pedro Lúcio Almeida, Nídia D. Lourenço, Susana P. Gaudêncio, 2020, review article Abstract: Plastics are very useful materials and present numerous advantages in the daily life of individuals and society. However, plastics are accumulating in the environment and due to their low biodegradability rate, this problem will persist for centuries. Until recently, oceans were treated as places to dispose of litter, thus the persistent substances are causing serious pollution issues. Plastic and microplastic waste has a negative environmental, social, and economic impact, e.g., causing injury/death to marine organisms and entering the food chain, which leads to health problems. The development of solutions and methods to mitigate marine (micro)plastic pollution is in high demand. There is a knowledge gap in this field, reason why research on this thematic is increasing. Recent studies reported the biodegradation of some types of polymers using different bacteria, biofilm forming bacteria, bacterial consortia, and fungi. Biodegradation is influenced by several factors, from the type of microorganism to the type of polymers, their physicochemical properties, and the environment conditions (e.g., temperature, pH, UV radiation). Currently, green environmentally friendly alternatives to plastic made from renewable feedstocks are starting to enter the market. This review covers the period from 1964 to April 2020 and comprehensively gathers investigation on marine plastic and microplastic pollution, negative consequences of plastic use, and bioplastic production. It lists the most useful methods for plastic degradation and recycling valorization, including degradation mediated by microorganisms (biodegradation) and the methods used to detect and analyze the biodegradation.
Published in DiRROS: 06.08.2024; Views: 377; Downloads: 383
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953. Plant molecular responses to potato virus Y : a continuum of outcomes from sensitivity and tolerance to resistanceŠpela Baebler, Anna Coll Rius, Kristina Gruden, 2020, review article Abstract: Potato virus Y (PVY) is the most economically important virus affecting potato production. PVY manipulates the plant cell machinery in order to successfully complete the infecting cycle. On the other side, the plant activates a sophisticated multilayer immune defense response to combat viral infection. The balance between these mechanisms, depending on the plant genotype and environment, results in a specific outcome that can be resistance, sensitivity, or tolerance. In this review, we summarize and compare the current knowledge on molecular events, leading to different phenotypic outcomes in response to PVY and try to link them with the known molecular mechanisms.
Keywords: potato virus Y, Potyviridae, potato, Solanum tuberosum, Solanaceae, plant immune signaling, plant hormones, tolerance, susceptibility, resistance
Published in DiRROS: 06.08.2024; Views: 521; Downloads: 380
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954. Cold plasma, a new hope in the field of virus inactivationArijana Filipić, Ion Gutiérrez-Aguirre, Gregor Primc, Miran Mozetič, David Dobnik, 2020, review article Abstract: Viruses can infect all cell-based organisms, from bacteria to humans, animals, and plants. They are responsible for numerous cases of hospitalization, many deaths, and widespread crop destruction, all of which result in an enormous medical, economical, and biological burden. Each of the currently used decontamination methods has important drawbacks. Cold plasma (CP) has entered this field as a novel, efficient, and clean solution for virus inactivation. We present recent developments in this promising field of CP-mediated virus inactivation, and describe the applications and mechanisms of the inactivation. This is particularly relevant because viral pandemics, such as COVID-19, highlight the need for alternative virus inactivation methods to replace, complement, or upgrade existing procedures.
Published in DiRROS: 06.08.2024; Views: 438; Downloads: 282
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955. The digital MIQE guidelines update : minimum information for publication of quantitative digital PCR experiments for 2020Jim F. Huggett, Alexandra S. Whale, Ward De Spiegelaere, Afif M. Abdel Nour, Young-Kyung Bae, Vladimír Beneš, Dan Burke, Megan Cleveland, Philippe Corbisier, Alison S. Devonshire, Lianhua Dong, Daniela Drandi, Carole A. Foy, Jeremy A. Garson, Hua-Jun He, Jan Hellemans, Mikael Kubista, Antoon Lievens, Mike G. Makrigiorgos, Mojca Milavec, Reinhold D. Mueller, Tania Nolan, Denise M. O'Sullivan, Michael W. Pfaffl, Stefan Rödiger, Erica L. Romsos, Gregory L. Shipley, Valérie Taly, Andreas Untergasser, Carl T. Wittwer, Stephen A. Bustin, Jo Vandesompele, 2020, review article Abstract: Digital PCR (dPCR) has developed considerably since the publication of the Minimum Information for Publication of Digital PCR Experiments (dMIQE) guidelines in 2013, with advances in instrumentation, software, applications, and our understanding of its technological potential. Yet these developments also have associated challenges; data analysis steps, including threshold setting, can be difficult and preanalytical steps required to purify, concentrate, and modify nucleic acids can lead to measurement error. To assist independent corroboration of conclusions, comprehensive disclosure of all relevant experimental details is required. To support the community and reflect the growing use of dPCR, we present an update to dMIQE, dMIQE2020, including a simplified dMIQE table format to assist researchers in providing key experimental information and understanding of the associated experimental process. Adoption of dMIQE2020 by the scientific community will assist in standardizing experimental protocols, maximize efficient utilization of resources, and further enhance the impact of this powerful technology.
Published in DiRROS: 06.08.2024; Views: 387; Downloads: 297
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956. Epithelial-to-mesenchymal transition as the driver of changing carcinoma and glioblastoma microenvironmentBernarda Majc, Tilen Sever, Miki Zarić, Barbara Breznik, Boris Turk, Tamara Lah Turnšek, 2020, review article Abstract: Epithelial-to-mesenchymal transition (EMT) is an essential molecular and cellular process that is part of normal embryogenesis and wound healing, and also has a ubiquitous role in various types of carcinoma and glioblastoma. EMT is activated and regulated by specific microenvironmental endogenous triggers and a complex network of signalling pathways. These mostly include epigenetic events that affect protein translation-controlling factors and proteases, altogether orchestrated by the switching on and off of oncogenes and tumour-suppressor genes in cancer cells. The hallmark of cancer-linked EMT is that the process is incomplete, as it is opposed by the reverse process of mesenchymal-to-epithelial transition, which results in a hybrid epithelial/mesenchymal phenotype that shows notable cell plasticity. This is a characteristic of cancer stem cells (CSCs), and it is of the utmost importance in their niche microenvironment, where it governs CSC migratory and invasive properties, thereby creating metastatic CSCs. These cells have high resistance to therapeutic treatments, in particular in glioblastoma.
Keywords: carcinomas, cancer stem cellsInvasion, proteases, tumour microenvironment
Published in DiRROS: 06.08.2024; Views: 395; Downloads: 414
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957. Between source and sea : the role of wastewater treatment in reducing marine microplasticsShirra Freeman, Andy M. Booth, Isam Sabbah, Rachel Tiller, Jan Dierking, Katja Klun, Ana Rotter, Eric Ben David, Jamileh Javidpour, Dror Angel, 2020, review article Abstract: Wastewater treatment plants (WWTPs) are a focal point for the removal of microplastic (MP) particles before they are discharged into aquatic environments. WWTPs are capable of removing substantial quantities of larger MP particles but are inefficient in removing particles with any one dimension of less than 100 μm, with influents and effluents tending to have similar quantities of these smaller particles. As a single WWTP may release >100 billion MP particles annually, collectively WWTPs are significant contributors to the problem of MP pollution of global surface waters. Currently, there are no policies or regulations requiring the removal of MPs during wastewater treatment, but as concern about MP pollution grows, the potential for wastewater technologies to capture particles before they reach surface waters has begun to attract attention. There are promising technologies in various stages of development that may improve the removal of MP particles from wastewater. Better incentivization could speed up the research, development and adoption of innovative practices. This paper describes the current state of knowledge regarding MPs, wastewater and relevant policies that could influence the development and deployment of new technologies within WWTPs. We review existing technologies for capturing very small MP particles and examine new developments that may have the potential to overcome the shortcomings of existing methods. The types of collaborations needed to encourage and incentivize innovation within the wastewater sector are also discussed, specifically strong partnerships among scientific and engineering researchers, industry stakeholders, and policy decision makers.
Keywords: wastewater, microplastic, particle removal, innovation, policy, jellyfish mucus
Published in DiRROS: 06.08.2024; Views: 424; Downloads: 794
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958. A perspective on the potential of using marine organic fertilizers for the sustainable management of coastal ecosystem servicesIraj Emadodin, Thorsten Reinsch, Ana Rotter, Martina Orlando-Bonaca, Friedhelm Taube, Jamileh Javidpour, 2020, review article Abstract: Agricultural production is predicted to double during the next century. To ensure food security in response to global population growth is a challenge and will require strategies that mitigate associated environmental damage in ways consistent with United Nation’s Sustainable Development Goals. One possible approach is to utilize organic fertilizers from marine sources to improve soil structure by enhancing activities of soil organisms and restoring essential plant nutrients to the soil. Here we identify opportunities to develop organic fertilizers from two types of materials of marine origin: seagrass wrack and jellyfish biomass. Seagrass wrack often occurs as undesirable waste material on beaches. In many coastal areas around the world jellyfish bloom presents a nuisance because of negative impacts on marine ecosystem productivity. Several investigations have reported that organic fertilizers produced from seagrass and jellyfish could enhance coastal ecosystem services by reducing pollution, and by improving soil health and quality. Recent research indicates that seagrass litter improves soil water holding capacity and the nutritional value of crops; moreover, it can be used as multi-functional fertilizer, due to its content of valuable macro- and microelements. The application of jellyfish fertilizer increases soil contents of organic matter, nitrogen, phosphorus and potassium and enhances the growth and survival of seedlings significantly. In this overview we describe novel approaches regarding the utilization of seagrass and jellyfish as sources of fertilizer, and experimental studies on the influences of marine organic fertilizers on soil restoration, and implications for coastal management.
Keywords: seagrass, jellyfish, soil ecosystem, sustainable agriculture, soil fertility, blue economy
Published in DiRROS: 06.08.2024; Views: 476; Downloads: 424
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959. Brain malignancies : glioblastoma and brain metastasesTamara Lah Turnšek, Metka Novak, Barbara Breznik, 2020, review article Abstract: Brain, the major organ of the central nervous system controls and processes most of body activities. Therefore, the most aggressive brain tumor – glioblastoma and metastases from other organs to the brain are lethal leaving the patients with very short time of survival. The brain tissue landscape is very different from any other tissues and the specific microenvironment, comprising stem cells niches and blood-brain barrier, significantly influences the low rate of glioblastoma metastasis out of the brain, but better accommodates brain-invading cancer. In contrast to low frequency (0.5%) of all glioblastoma metastases, 10%–45% of other primary cancers do metastasize to the brain. This review addresses general cellular and molecular pathways that are to some extent similar in both types of metastases, involving circulating tumor cells (CTCs) with cancer stem cells (CSCs) characteristics, and metastatic niches. The invasion is a dynamic process involving reversible epithelial-to-mesenchymal (EMT) cell process, creating a transient gradient state that is inter-connected with epigenetic plasticity of the metastasizing (m)CSCs. These cells can switch between stationary, low proliferating/dormant state to a migratory, mesenchymal-like state. Settling in their respective niches as dormant CSCs in the secondary organ is a common feature in all types of metastases. In glioblastoma metastasis, the malignant mGSC cells express markers of mesenchymal GSC subtype (MES-GSC), such as CD44 and YK-40 and their major obstacle seems to be propagating in the in various organs’ microenvironments, different from the niches that home GSCs in the primary glioblastoma. Focusing on one stromal component in the glioblastoma niches, the mesenchymal stem cells (MSCs), we report herein on their differential effects on glioblastoma cells, highly depending on their genetic subtype. On the other hand, in brain metastases, the major hindrance to metastatic progression of mCSCs seem to be crossing the blood-brain-barrier. Novel therapeutic approaches for brain metastases from various cancer types are advancing slowly, and the general trends involve targeting metastatic sub-clones and selective determinants of their niches. The update on the four most common brain metastases from lung, breast, melanoma and colorectal carcinoma is presented.
Keywords: glioblastoma, cancer stem cells, invasion, metastasis, tumor microenvironment
Published in DiRROS: 06.08.2024; Views: 441; Downloads: 273
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960. Stink bug communication and signal detection in a plant environmentAndrej Čokl, Alenka Žunič Kosi, Nataša Stritih Peljhan, Maria Carolina Blassioli Moraes, Raúl Alberto Laumann, Miguel Borges, 2021, review article Abstract: Plants influenced the evolution of plant-dwelling stink bugs’ systems underlying communication with chemical and substrate-borne vibratory signals. Plant volatiles provides cues that increase attractiveness or interfere with the probability of finding a mate in the field. Mechanical properties of herbaceous hosts and associated plants alter the frequency, amplitude, and temporal characteristics of stink bug species and sex-specific vibratory signals. The specificity of pheromone odor tuning has evolved through highly specific odorant receptors located within the receptor membrane. The narrow-band low-frequency characteristics of the signals produced by abdomen vibration and the frequency tuning of the highly sensitive subgenual organ vibration receptors match with filtering properties of the plants enabling optimized communication. A range of less sensitive mechanoreceptors, tuned to lower vibration frequencies, detect signals produced by other mechanisms used at less species-specific levels of communication in a plant environment. Whereas the encoding of frequency-intensity and temporal parameters of stink bug vibratory signals is relatively well investigated at low levels of processing in the ventral nerve cord, processing of this information and its integration with other modalities at higher neuronal levels still needs research attention.
Published in DiRROS: 05.08.2024; Views: 354; Downloads: 303
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