| Naslov: | From language models to large-scale food and biomedical knowledge graphs |
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| Avtorji: | ID Cenikj, Gjorgjina, Institut Jožef Stefan (Avtor)
ID Strojnik, Lidija, Institut Jožef Stefan (Avtor)
ID Angelski, Risto (Avtor)
ID Ogrinc, Nives, Institut Jožef Stefan (Avtor)
ID Koroušić-Seljak, Barbara, Institut Jožef Stefan (Avtor)
ID Eftimov, Tome, Institut Jožef Stefan (Avtor) |
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| Datoteke: |  URL - Izvorni URL, za dostop obiščite https://www.nature.com/articles/s41598-023-34981-4
 PDF - Predstavitvena datoteka, prenos (2,39 MB)
MD5: FA6D33D9F9BF8BEB3F386B8906D85B8F
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| Jezik: | Angleški jezik |
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| Tipologija: | 1.01 - Izvirni znanstveni članek |
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| Organizacija: |  IJS - Institut Jožef Stefan
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| Povzetek: | Knowledge about the interactions between dietary and biomedical factors is scattered throughout uncountable research articles in an unstructured form (e.g., text, images, etc.) and requires automatic structuring so that it can be provided to medical professionals in a suitable format. Various biomedical knowledge graphs exist, however, they require further extension with relations between food and biomedical entities. In this study, we evaluate the performance of three state-of-the-art relation-mining pipelines (FooDis, FoodChem and ChemDis) which extract relations between food, chemical and disease entities from textual data. We perform two case studies, where relations were automatically extracted by the pipelines and validated by domain experts. The results show that the pipelines can extract relations with an average precision around 70%, making new discoveries available to domain experts with reduced human effort, since the domain experts should only evaluate the results, instead of finding, and reading all new scientific papers. |
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| Ključne besede: | biomedical knowledge graphs, relation-mining pipelines, relation extraction, validation |
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| Status publikacije: | Objavljeno |
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| Verzija publikacije: | Objavljena publikacija |
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| Datum sprejetja članka: | 10.05.2023 |
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| Datum objave: | 15.05.2023 |
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| Založnik: | Springer Nature |
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| Leto izida: | 2023 |
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| Št. strani: | str. 1-14 |
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| Številčenje: | Vol. 13, article no. 7815 |
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| Izvor: | Švica |
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| PID: | 20.500.12556/DiRROS-16510  |
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| UDK: | 004 |
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| ISSN pri članku: | 2045-2322 |
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| DOI: | 0.1038/s41598-023-34981-4 |
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| COBISS.SI-ID: | 152401411 |
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| Opomba: | Nasl. z nasl. zaslona;
Soavtorji: Lidija Strojnik, Risto Angelski, Nivec Ogrinc, Barbara Koroušić Seljak, Tome Eftimov;
Opis vira z dne 17. 5. 2023;
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| Datum objave v DiRROS: | 17.05.2023 |
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| Število ogledov: | 778 |
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| Število prenosov: | 313 |
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| Metapodatki: |    |
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