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Naslov:Enabling reusability of plant phenomic datasets with MIAPPE 1.1
Avtorji:ID Papoutsoglou, Evangelia A. (Avtor)
ID Faria, Daniel (Avtor)
ID Arend, Daniel (Avtor)
ID Arnaud, Elizabeth (Avtor)
ID Athanasiadis, Ioannis N. (Avtor)
ID Chaves, Inês (Avtor)
ID Coppens, Frederik (Avtor)
ID Cornut, Guillaume (Avtor)
ID Costa, Bruno V. (Avtor)
ID Ćwiek-Kupczyńska, Hanna (Avtor)
ID Gruden, Kristina (Avtor)
ID Ramšak, Živa (Avtor)
Datoteke:URL URL - Izvorni URL, za dostop obiščite https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16544
 
.pdf PDF - Predstavitvena datoteka, prenos (1,96 MB)
MD5: 9A0EB9B384D087A2AD151C84571AD075
 
Jezik:Angleški jezik
Tipologija:1.01 - Izvirni znanstveni članek
Organizacija:Logo NIB - Nacionalni inštitut za biologijo
Povzetek:Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.
Status publikacije:Objavljeno
Verzija publikacije:Objavljena publikacija
Datum objave:01.07.2020
Leto izida:2020
Št. strani:str. 260-273
Številčenje:Vol. 227, iss. 1
PID:20.500.12556/DiRROS-19544 Novo okno
UDK:60
ISSN pri članku:1469-8137
DOI:10.1111/nph.16544 Novo okno
COBISS.SI-ID:40488453 Novo okno
Opomba:Nasl. z nasl. zaslona; Opis vira z dne 23. 3. 2020;
Datum objave v DiRROS:22.07.2024
Število ogledov:8
Število prenosov:4
Metapodatki:XML RDF-CHPDL DC-XML DC-RDF
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Gradivo je del revije

Naslov:The new phytologist
Skrajšan naslov:New phytol.
Založnik:Cambridge University Press.
ISSN:1469-8137
COBISS.SI-ID:517796633 Novo okno

Gradivo je financirano iz projekta

Financer:EC - European Commission
Številka projekta:676559
Naslov:ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.
Akronim:ELIXIR-EXCELERATE

Financer:EC - European Commission
Številka projekta:739514
Naslov:Preparation for EMPHASIS: European Infrastructure for multi-scale Plant Phenomics and Simulation for food security in a changing climate
Akronim:EMPHASIS-PREP

Financer:ANR - French National Research Agency
Program financ.:French National Research Agency (ANR)
Številka projekta:ANR-11-INBS-0012
Naslov:Centre français de phénomique végétale
Akronim:PHENOME

Financer:RCUK - Research Council UK
Številka projekta:BB/L024101/1
Naslov:COpenPlantOmics (COPO): a Collaborative Bioinformatics Plant Science Platform

Financer:RCUK - Research Council UK
Številka projekta:BB/L005069/1
Naslov:Delivering ELIXIR-UK

Financer:WT - Wellcome Trust
Številka projekta:212930
Naslov:The FAIRsharing service: supporting the research life-cycle

Financer:WT - Wellcome Trust
Številka projekta:208381
Naslov:ISA-InterMine: accelerating and rewarding data sharing

Financer:EC - European Commission
Številka projekta:634107
Naslov:Capture, dissemination and analysis of multiscale cell migration data for biological and clinical applications (MULTIMOT)
Akronim:MULTIMOT

Financer:EC - European Commission
Številka projekta:654241
Naslov:PhenoMeNal: A comprehensive and standardised e-infrastructure for analysing medical metabolic phenotype data
Akronim:PhenoMeNal

Financer:EC - European Commission
Številka projekta:116060
Naslov:Inhibiting Misfolded protein PRopagation in Neurodegenerative Diseases - Sofia ref.: 116060
Akronim:IMPRiND

Financer:NSF - National Science Foundation
Številka projekta:1340112
Naslov:cROP: Common Reference Ontologies and Applications for Plant Biology

Financer:FCT - Fundação para a Ciência e a Tecnologia, I.P.
Številka projekta:DL 57/2016/CP1351/CT0003
Naslov:Not available
Akronim:DL 57/2016/CP1351/CT0003

Financer:EC - European Commission
Številka projekta:731013
Naslov:European Plant Phenotyping Network 2020
Akronim:EPPN2020

Financer:EC - European Commission
Program financ.:RDA Europe project funded by the European Commission

Financer:Drugi - Drug financer ali več financerjev
Program financ.:National Science Centre grant
Številka projekta:2016/21/N/ST6/0235

Licence

Licenca:CC BY 4.0, Creative Commons Priznanje avtorstva 4.0 Mednarodna
Povezava:http://creativecommons.org/licenses/by/4.0/deed.sl
Opis:To je standardna licenca Creative Commons, ki daje uporabnikom največ možnosti za nadaljnjo uporabo dela, pri čemer morajo navesti avtorja.

Sekundarni jezik

Jezik:Slovenski jezik
Ključne besede:biotehnologija, fenomika, standardi, FAIR smernice, metapodatki, rastlinska fenotipizacija


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