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Iskalni niz: "ključne besede" (database) .

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1.
A global database of dissolved organic matter (DOM) concentration measurements in coastal waters (CoastDOM v1)
Christian Lønborg, Cátia Carreira, Gwenaël Abril, Katja Klun, Tinkara Tinta, 2024, izvirni znanstveni članek

Povzetek: Measurements of dissolved organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) concentrations are used to characterize the dissolved organic matter (DOM) pool and are important components of biogeochemical cycling in the coastal ocean. Here, we present the first edition of a global database (CoastDOM v1; available at https://doi.org/10.1594/PANGAEA.964012, Lønborg et al., 2023) compiling previously published and unpublished measurements of DOC, DON, and DOP in coastal waters. These data are complemented by hydrographic data such as temperature and salinity and, to the extent possible, other biogeochemical variables (e.g. chlorophyll a, inorganic nutrients) and the inorganic carbon system (e.g. dissolved inorganic carbon and total alkalinity). Overall, CoastDOM v1 includes observations of concentrations from all continents. However, most data were collected in the Northern Hemisphere, with a clear gap in DOM measurements from the Southern Hemisphere. The data included were collected from 1978 to 2022 and consist of 62 338 data points for DOC, 20 356 for DON, and 13 533 for DOP. The number of measurements decreases progressively in the sequence DOC > DON > DOP, reflecting both differences in the maturity of the analytical methods and the greater focus on carbon cycling by the aquatic science community. The global database shows that the average DOC concentration in coastal waters (average ± standard deviation (SD): 182±314 µmolC L−1; median: 103 µmolC L−1) is 13-fold higher than the average coastal DON concentration (13.6 ± 30.4 µmol N L−1; median: 8.0 µmol N L−1), which is itself 39-fold higher than the average coastal DOP concentration (0.34 ± 1.11 µmol P L−1; median: 0.18 µmol P L−1). This dataset will be useful for identifying global spatial and temporal patterns in DOM and will help facilitate the reuse of DOC, DON, and DOP data in studies aimed at better characterizing local biogeochemical processes; closing nutrient budgets; estimating carbon, nitrogen, and phosphorous pools; and establishing a baseline for modelling future changes in coastal waters.
Ključne besede: global database, dissolved organic matter, coastal waters, marine biology
Objavljeno v DiRROS: 17.05.2024; Ogledov: 25; Prenosov: 11
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Quality-assurance of heat-flow data: the new structure and evaluation scheme of the IHFC Global Heat Flow Database
Sven Fuchs, Ben Norden, Florian Neumann, Norbert Kaul, Akiko Tanaka, Ilmo T. Kukkonen, Christophe Pascal, Rodolfo Christiansen, Gianluca Gola, Dušan Rajver, 2023, izvirni znanstveni članek

Povzetek: Since 1963, the International Heat Flow Commission has been fostering the compilation of the Global Heat Flow Database to provide reliable heat-flow data. Over time, techniques and methodologies evolved, calling for a reorganization of the database structure and for a reassessment of stored heat-flow data. Here, we provide the results of a collaborative, community-driven approach to set-up a new, quality-approved global heat-flow database. We present background information on how heat-flow is determined and how this important thermal parameter could be systematically evaluated. The latter requires appropriate documentation of metadata to allow the application of a consistent evaluation scheme. The knowledge of basic data (name and coordinates of the site, depth range of temperature measurements, etc.), details on temperature and thermal-conductivity data and possible perturbing effects need to be given. The proposed heat-flow quality evaluation scheme can discriminate between different quality aspects affecting heat flow: numerical uncertainties, methodological uncertainties, and environmental effects. The resulting quality codes allow the evaluation of every stored heat-flow data entry. If mandatory basic data are missing, the entry is marked accordingly. In cases where more than one heat-flow determination is presented for one specific site, and all of them are considered for the site, the poorest evaluation score is inherited to the site level. The required data and the proposed scheme are presented in this paper. Due to the requirements of the newly developed evaluation scheme, the database structure as presented in 2021 has been updated and is available in the appendix of this paper. The new quality scheme will allow a comprehensible evaluation of the stored heat-flow data for the first time.
Ključne besede: heat-flow density, quality scheme, thermal geophysics, global heat flow database (GHFD), thermal parameter, data information system, International Heat Flow Commission (IHFC)
Objavljeno v DiRROS: 09.08.2023; Ogledov: 352; Prenosov: 131
.pdf Celotno besedilo (4,78 MB)

4.
GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
Tomáš Větrovský, Daniel Morais, Petr Kohout, Clémentine Lepinay, Camelia Algora, Sandra Awokunle Hollá, Barbara Doreen Bahnmann, Květa Bílohnědá, Vendula Brabcová, Federica DʹAlò, Tijana Martinović, 2020, izvirni znanstveni članek

Povzetek: Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition, symbiotic associations with cultivated and wild plants and pathogenicity. The high importance of fungi in ecosystem processes contrasts with the incompleteness of our understanding of the patterns of fungal biogeography and the environmental factors that drive those patterns. To reduce this gap of knowledge, we collected and validated data published on the composition of soil fungal communities in terrestrial environments including soil and plant-associated habitats and made them publicly accessible through a user interface at https://globalfungi.com. The GlobalFungi database contains over 600 million observations of fungal sequences across >17 000 samples with geographical locations and additional metadata contained in 178 original studies with millions of unique nucleotide sequences (sequence variants) of the fungal internal transcribed spacers (ITS) 1 and 2 representing fungal species and genera. The study represents the most comprehensive atlas of global fungal distribution, and it is framed in such a way that third-party data addition is possible.
Ključne besede: fungi, database, metabarcoading
Objavljeno v DiRROS: 03.01.2022; Ogledov: 703; Prenosov: 594
.pdf Celotno besedilo (2,17 MB)
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