221. From language models to large-scale food and biomedical knowledge graphsGjorgjina Cenikj, Lidija Strojnik, Risto Angelski, Nives Ogrinc, Barbara Koroušić-Seljak, Tome Eftimov, 2023, original scientific article Abstract: Knowledge about the interactions between dietary and biomedical factors is scattered throughout uncountable research articles in an unstructured form (e.g., text, images, etc.) and requires automatic structuring so that it can be provided to medical professionals in a suitable format. Various biomedical knowledge graphs exist, however, they require further extension with relations between food and biomedical entities. In this study, we evaluate the performance of three state-of-the-art relation-mining pipelines (FooDis, FoodChem and ChemDis) which extract relations between food, chemical and disease entities from textual data. We perform two case studies, where relations were automatically extracted by the pipelines and validated by domain experts. The results show that the pipelines can extract relations with an average precision around 70%, making new discoveries available to domain experts with reduced human effort, since the domain experts should only evaluate the results, instead of finding, and reading all new scientific papers.
Keywords: biomedical knowledge graphs, relation-mining pipelines, relation extraction, validation
Published in DiRROS: 17.05.2023; Views: 416; Downloads: 167
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222. Zarodne in somatske mutacije kožnega melanomaBarbara Perić, 2023, published scientific conference contribution Abstract: Vsaka celica telesa ima svoj lasten genski zapis. Kakšen je ta zapis in kako se prevede v beljakovine je odvisno od zarodnih sprememb genov in od vplivov okolja. Genski zapis je osnova za nastanek, razumevanje in dandanes tudi zdravljenje raka. V zadnjih dveh desetletjih so bili melanociti in kožni melanom, ki nastane iz njih predmet številnih molekularnogenetskih raziskav. Tako vemo, da med osebami z družinsko obremenitvijo za kožni melanom najpogosteje odkrijemo patogeno različico CDKN2A gena ob kateri je zvišano tako tveganje za kožni melanom kot za rak trebušne slinavke. Ko govorimo o somatskih mutacijah, je gotovo najbolj znana BRAFV600Emutacija, ki predstavlja enega prvih dogodkov v patogenezi kožnih melanomov nastalih na intermitentno soncu izpostavljeni koži. Leta raziskav tovrstnih gonilnih mutacij so pripeljala tudi do razvoja tarčne terapije.
Keywords: rak kože, melanom, kožni melanom
Published in DiRROS: 16.05.2023; Views: 352; Downloads: 116
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223. Poročilo o preskusu št.: LVG 2023-022 : vzorec št. 2023/00021Nikica Ogris, Špela Hočevar, Zina Devetak, Špela Jagodic, Ana Brglez, Barbara Piškur, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, Fusarium circinatum, borov smolasti rak, rdeči bor, Pinus sylvestris, črni bor, Pinus nigra
Published in DiRROS: 10.05.2023; Views: 377; Downloads: 0 |
224. Poročilo o preskusu št.: LVG 2023-021 : vzorec št. 2023/00050Nikica Ogris, Zina Devetak, Špela Hočevar, Barbara Piškur, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, rjavenje borovih iglic, Lecanosticta acicola, Dothistroma, rdeča pegavost borovih iglic, bori, Pinus
Published in DiRROS: 09.05.2023; Views: 325; Downloads: 0 |
225. Poročilo o preskusu št.: LVG 2023-020 : vzorec št. 2023/00045Barbara Piškur, Tine Hauptman, Špela Hočevar, Zina Devetak, Nikica Ogris, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, Geosmithia morbida, bolezen tisočerih rakov, oreh, Juglans, Botryosphaeriaceae, sušenje vej, napad žuželk
Published in DiRROS: 08.05.2023; Views: 364; Downloads: 0 |
226. Poročilo o preskusu št.: LVG 2023-019 : vzorec št. 2023/00047Nikica Ogris, Zina Devetak, Špela Jagodic, Barbara Piškur, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, Fusarium circinatum, borov smolasti rak, bor, Pinus
Published in DiRROS: 04.05.2023; Views: 336; Downloads: 0 |
227. Poročilo o preskusu št.: LVG 2023-015 : vzorec št. 2023/00013Nikica Ogris, Špela Hočevar, Barbara Piškur, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, Fusarium circinatum, borov smolasti rak, bor, Pinus
Published in DiRROS: 17.04.2023; Views: 405; Downloads: 0 |
228. Poročilo o preskusu št.: LVG 2023-013 : vzorec št. 2023/00033Nikica Ogris, Špela Hočevar, Zina Devetak, Barbara Piškur, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, Fusarium circinatum, borov smolasti rak, Pinus
Published in DiRROS: 12.04.2023; Views: 345; Downloads: 0 |
229. Poročilo o preskusu št.: LVG 2023-012 : vzorec št. 2023/00029Nikica Ogris, Špela Hočevar, Zina Devetak, Barbara Piškur, 2023, expertise, arbitration decision Keywords: varstvo gozdov, morfološke analize, Fusarium circinatum, borov smolasti rak, Pinus, Diplodia pinea
Published in DiRROS: 12.04.2023; Views: 367; Downloads: 0 |
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