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21.
Machine learning approaches identify male body size as the most accurate predictor of species richness
Klemen Čandek, Urška Pristovšek, Matjaž Kuntner, 2020, izvirni znanstveni članek

Povzetek: Background A major challenge in biodiversity science is to understand the factors contributing to the variability of species richness –the number of different species in a community or region - among comparable taxonomic lineages. Multiple biotic and abiotic factors have been hypothesized to have an effect on species richness and have been used as its predictors, but identifying accurate predictors is not straightforward. Spiders are a highly diverse group, with some 48,000 species in 120 families; yet nearly 75% of all species are found within just the ten most speciose families. Here we use a Random Forest machine learning algorithm to test the predictive power of different variables hypothesized to affect species richness of spider genera. Results We test the predictive power of 22 variables from spiders’ morphological, genetic, geographic, ecological and behavioral landscapes on species richness of 45 genera selected to represent the phylogenetic and biological breath of Araneae. Among the variables, Random Forest analyses find body size (specifically, minimum male body size) to best predict species richness. Multiple Correspondence analysis confirms this outcome through a negative relationship between male body size and species richness. Multiple Correspondence analyses furthermore establish that geographic distribution of congeneric species is positively associated with genus diversity, and that genera from phylogenetically older lineages are species poorer. Of the spider-specific traits, neither the presence of ballooning behavior, nor sexual size dimorphism, can predict species richness. Conclusions We show that machine learning analyses can be used in deciphering the factors associated with diversity patterns. Since no spider-specific biology could predict species richness, but the biologically universal body size did, we believe these conclusions are worthy of broader biological testing. Future work on other groups of organisms will establish whether the detected associations of species richness with small body size and wide geographic ranges hold more broadly.
Ključne besede: biodiversity, lineage diversity, species traits, spiders, phylogenetic diversity, species distribution, random forest, multiple correspondence analysis
Objavljeno v DiRROS: 22.07.2024; Ogledov: 247; Prenosov: 231
.pdf Celotno besedilo (1,78 MB)
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22.
Unpublished Mediterranean records of marine alien and cryptogenic species
Stelios Katsanevakis, Dimitris Poursanidis, Domen Trkov, Lovrenc Lipej, Ana Fortič, Martina Orlando-Bonaca, Borut Mavrič, 2020, izvirni znanstveni članek

Povzetek: Good datasets of geo-referenced records of alien species are a prerequisite for assessing the spatio-temporal dynamics of biological invasions, their invasive potential, and the magnitude of their impacts. However, with the exception of first records on a country level or wider regions, observations of species presence tend to remain unpublished, buried in scattered repositories or in the personal databases of experts. Through an initiative to collect, harmonize and make such unpublished data for marine alien and cryptogenic species in the Mediterranean Sea available, a large dataset comprising 5376 records was created. It includes records of 239 alien or cryptogenic taxa (192 Animalia, 24 Plantae, 23 Chromista) from 19 countries surrounding the Mediterranean Sea. In terms of records, the most reported Phyla in descending order were Chordata, Mollusca, Chlorophyta, Arthropoda, and Rhodophyta. The most recorded species was Caulerpa cylindracea, followed by Siganus luridus, Magallana sp. (cf. gigas or angulata) and Pterois miles. The dataset includes records from 1972 to 2020, with the highest number of records observed in 2018. Among the records of the dataset, Dictyota acutiloba is a first record for the Mediterranean Sea. Nine first country records are also included: the alga Caulerpa taxifolia var. distichophylla, the cube boxfish Ostracion cubicus, and the cleaner shrimp Urocaridella pulchella from Israel; the sponge Paraleucilla magna from Libya and Slovenia; the lumpfish Cyclopterus lumpus from Cyprus; the bryozoan Celleporaria vermiformis and the polychaetes Prionospio depauperata and Notomastus aberans from Malta.
Ključne besede: non-native species, non-indigenous, distribution, citizen science, invasive alien species, geo-referenced records, Mediterranean Sea
Objavljeno v DiRROS: 22.07.2024; Ogledov: 100; Prenosov: 105
.pdf Celotno besedilo (3,01 MB)
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23.
Ecological patterns of polychaete assemblages associated with the Mediterranean stony coral Cladocora caespitosa (Linnaeus, 1767) : a comparison of sites in two biogeographic zones (Adriatic and Aegean Sea)
Valentina Pitacco, Giorgos Chatzigeorgiou, Barbara Mikac, Lovrenc Lipej, 2021, izvirni znanstveni članek

Povzetek: The Mediterranean stony coral Cladocora caespitosa (Linnaeus, 1767) is a well-known habitat builder, and as such hosts a diversified faunal assemblage. Although polychaetes are one of the most abundant and diverse macrobenthic groups associated with C. caespitosa colonies, our knowledge of their ecological features in this association is still limited. The aim of this paper was to gather and compare the most comprehensive data available on polychaetes associated with C. caespitosa in the Adriatic and the Aegean Seas, and to test for differences between these geographic areas. To this end, differences were tested in terms of: (i) richness and structure of polychaete assemblages; (ii) feeding and functional traits of assemblages; (iii) the main factors influencing those aspects, (iv) the relationship between polychaete assemblages richness and Cladocora colony size, and estimate richness. Differences were observed between the Adriatic and the Aegean Seas, in terms of richness, species composition and relative proportion of the dominant feeding guild (filter feeders most abundant in the Aegean and carnivores in the Adriatic) and motility mode (sessile most abundant in the Aegean and motile in the Adriatic). Conversely, cosmopolitan and Atlanto-Mediterranean species dominated the assemblages in both geographic areas, and the same Species-Area Relation model proved to be effective for richness estimation in both geographic areas.
Ključne besede: benthic ecology, habitat builder species, polychaeta, Mediterranean Sea
Objavljeno v DiRROS: 19.07.2024; Ogledov: 102; Prenosov: 44
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24.
Virome analysis of signal crayfish (Pacifastacus leniusculus) along its invasion range reveals diverse and divergent RNA viruses
Katarina Bačnik, Denis Kutnjak, Silvija Černi, Ana Bielen, Sandra Hudina, 2021, izvirni znanstveni članek

Povzetek: Crayfish are a keystone species of freshwater ecosystems and a successful invasive species. However, their pathogens, including viruses, remain understudied. The aim of this study was to analyze the virome of the invasive signal crayfish (Pacifastacus leniusculus) and to elucidate the potential differences in viral composition and abundance along its invasion range in the Korana River, Croatia. By the high-throughput sequencing of ribosomal RNA, depleted total RNA isolated from the crayfish hepatopancreas, and subsequent sequence data analysis, we identified novel and divergent RNA viruses, including signal crayfish-associated reo-like, hepe-like, toti-like, and picorna-like viruses, phylogenetically related to viruses previously associated with crustacean hosts. The patterns of reads abundance and calculated nucleotide diversities of the detected viral sequences varied along the invasion range. This could indicate the possible influence of different factors and processes on signal crayfish virome composition: e.g., the differences in signal crayfish population density, the non-random dispersal of host individuals from the core to the invasion fronts, and the transfer of viruses from the native co-occurring and phylogenetically related crayfish species. The study reveals a high, previously undiscovered diversity of divergent RNA viruses associated with signal crayfish, and sets foundations for understanding the potential risk of virus transmissions as a result of this invader’s dispersal.
Ključne besede: signal crayfish virome, RNA viruses, invasive alien species, invasion range, high-throughput sequencing
Objavljeno v DiRROS: 19.07.2024; Ogledov: 199; Prenosov: 92
.pdf Celotno besedilo (4,22 MB)
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25.
Two new species of parastenocaris (Copepoda, Harpacticoida) from a hyporheic zone and overview of the present knowledge on Stygobiotic Copepoda in Vietnam : historical overview and new data
Ngoc-Son Tran, Mau Trinh-Dang, Anton Brancelj, 2021, izvirni znanstveni članek

Povzetek: The number of freshwater species belonging to the genus Parastenocaris reported from ten countries of Southeast Asia is quite limited. Only two species have been reported so far from freshwater habitats there, compared to over 290 described species of the family Parastenocarididae worldwide. During the first study of the hyporheic zone of two small rivers in central Vietnam, two new species of the family Parastenocarididae were collected, Parastenocaris sontraensis sp. nov. and Parastencaris vugiaensis sp. nov. Both were collected from the gravel bar along the rivers (Suoi Da and Vu Gia river) using the Karaman–Chappuis method. Both the new species belong to the brevipes group of the genus Parastenocaris Kessler, 1913 sensu Lang (1948), and Reid (1995). Parastenocaris sontraensis sp. nov. is similar to P. hinumaensis Kikuchi, 1970 and Parastenocaris jane Karanovic, 2006 in the brevipes-group. Parastenocaris sontraensis sp. nov. differs from both Parastenocaris species by (i) Exp P3 with three segments in the male, (ii) caudal rami with seven setae, and (iii) caudal rami about 2.4 times as long as wide. Parastencaris vugiaensis sp. nov. can be distinguished from its congeners by the unique combination of the following characters: (i) the elliptical shape of caudal rami, (ii) apical seta (V) with bulbous base, and (iii) anal operculum extends beyond the end of anal somite. Until now, 14 stygobiotic species of Copepoda have been recorded in Vietnam (including two new species in this paper), which is relatively few compared with nearby Thailand with 25 species. Short comments on other stygobiotic Copepoda from Vietnam are added.
Ključne besede: Southeast Asia, groundwater fauna, hyporheic zone, Copepoda, new species, taxonomy
Objavljeno v DiRROS: 19.07.2024; Ogledov: 98; Prenosov: 86
.pdf Celotno besedilo (3,07 MB)
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26.
Status and trends in the rate of introduction of marine non-indigenous species in European seas
Argyro Zenetos, Konstantinos Tsiamis, Marika Galanidi, Natacha Carvalho, Cátia Bartilotti, Borut Mavrič, Martina Orlando-Bonaca, 2022, izvirni znanstveni članek

Povzetek: nvasive alien species are a major worldwide driver of biodiversity change. The current study lists verified records of non-indigenous species (NIS) in European marine waters until 2020, with the purpose of establishing a baseline, assessing trends, and discussing appropriate threshold values for good environmental status (GES) according to the relevant European legislation. All NIS records were verified by national experts and trends are presented in six-year assessment periods from 1970 to 2020 according to the European Union Marine Strategy Framework Directive. Altogether, 874 NIS have been introduced to European marine waters until 2020 with the Mediterranean Sea and North-East Atlantic Ocean hosting most of the introductions. Overall, the number of new introductions has steadily increased since 2000. The annual rate of new introductions reached 21 new NIS in European seas within the last six-year assessment period (2012–2017). This increase is likely due to increased human activities and research efforts that have intensified during the early 21st century within European Seas. As Europe seas are not environmentally, nor geographically homogenous, the setting of threshold values for assessing GES requires regional expertise. Further, once management measures are operational, pathway-specific threshold values would enable assessing the effectiveness of such measures.
Ključne besede: non-indigenous species, European seas, regional seas, MSFD, good environmental status, validation, uncertainties
Objavljeno v DiRROS: 18.07.2024; Ogledov: 121; Prenosov: 163
.pdf Celotno besedilo (2,13 MB)
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27.
New alien Mediterranean biodiversity records (August 2022)
Francesco Tiralongo, Okan Akyol, Sara A. A. Al-Mabruk, Pietro Battaglia, Damla Beton, Banu Bitls, John Joseph Borg, Marc Bouchoucha, Melih Ertan Çinar, Fabio Crocetta, Branko Dragičević, Jakov Dulčić, Athanasios Evangelopoulos, Julian Evans, Ana Fortič, Robin P. M. Gauff, Constantinos Georgiadis, Mehmet Gökoğlu, Daniele Grech, Tamar Guy-Haim, Mehmet Fatih Huseyinoglu, Domen Trkov, 2022, izvirni znanstveni članek

Povzetek: In this Collective Article on alien and cryptogenic diversity in the Mediterranean Sea we report a total of 19 species belonging to nine Phyla and coming from nine countries. Several of these records concern fish species, and of particular interest are the first records of: Terapon puta for Italian waters; Pteragopus trispilus from Malta; Plotosus lineatus from Cyprus; and the northernmost Mediterranean record of Lagocephalus sceleratus. The northernmost Mediterranean record was also reported for the sea urchin Diadema setosum. The portunid crab Thalamita poissonii was recorded for the first time in Libya. The copepod Pseudodiaptomus marinus was recorded for the first time in the Marmara Sea. The polychaete Branchiomma luctuosum was recorded for the first time from the Mediterranean coast of France. The alien anemone Diadumene lineata was recorded for the first time from Slovenia. The macroalgae Sargassum furcatum was recorded for the first time from Italy. The new Mediterranean records here reported help tracing abundance and distribution of alien and cryptic species in the Mediterranean Sea.
Ključne besede: alien diversity, cryptogenic diversity, new species, Mediterranean Sea
Objavljeno v DiRROS: 17.07.2024; Ogledov: 114; Prenosov: 114
.pdf Celotno besedilo (6,43 MB)
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28.
Pelagic calcifiers face increased mortality and habitat loss with warming and ocean acidification
Nina Bednaršek, Brendan Carter, Ryan M. McCabe, Richard Alan Feely, Evan M. Howard, Francisco P. Chavez, Meredith Elliott, Jennifer L. Fisher, Jaime Jahncke, Zach Siegrist, 2022, izvirni znanstveni članek

Povzetek: Global change is impacting the oceans in an unprecedented way, and multiple lines of evidence suggest that species distributions are changing in space and time. There is increasing evidence that multiple environmental stressors act together to constrain species habitat more than expected from warming alone. Here, we conducted a comprehensive study of how temperature and aragonite saturation state act together to limit Limacina helicina, globally distributed pteropods that are ecologically important pelagic calcifiers and an indicator species for ocean change. We co-validated three different approaches to evaluate the impact of ocean warming and acidification (OWA) on the survival and distribution of this species in the California Current Ecosystem. First, we used colocated physical, chemical, and biological data from three large-scale west coast cruises and regional time series; second, we conducted multifactorial experimental incubations to evaluate how OWA impacts pteropod survival; and third, we validated the relationships we found against global distributions of pteropods and carbonate chemistry. OWA experimental work revealed mortality increases under OWA, while regional habitat suitability indices and global distributions of L. helicina suggest that a multi-stressor framework is essential for understanding pteropod distributions. In California Current Ecosystem habitats, where pteropods are living close to their thermal maximum already, additional warming and acidification through unabated fossil fuel emissions (RCP 8.5) are expected to dramatically reduce habitat suitability.
Ključne besede: California current ecosystem, climate change, global data synthesis, habitat loss, habitat suitability modeling, multiple stressors, ocean acidification, pelagic calcifiers, pteropods, species distribution, warming
Objavljeno v DiRROS: 17.07.2024; Ogledov: 104; Prenosov: 154
.pdf Celotno besedilo (2,23 MB)
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29.
Improving taxonomic practices and enhancing its extensibility—an example from araneology
Jason E. Bond, Rebecca L. Godwin, Jordan D. Colby, Lacie G. Newton, Xavier J. Zahnle, Ingi Agnarsson, Christopher A. Hamilton, Matjaž Kuntner, 2022, izvirni znanstveni članek

Povzetek: Planetary extinction of biodiversity underscores the need for taxonomy. Here, we scrutinizespider taxonomy over the last decade (2008–2018), compiling 2083 published accounts of newlydescribed species. We evaluated what type of data were used to delineate species, whether data weremade freely available, whether an explicit species hypothesis was stated, what types of media wereused, the sample sizes, and the degree to which species constructs were integrative. The findings wereport reveal that taxonomy remains largely descriptive, not integrative, and provides no explicitconceptual framework. Less than 4% of accounts explicitly stated a species concept and over one-thirdof all new species described were based on 1–2 specimens or only one sex. Only ~5% of studies madedata freely available, and only ~14% of all newly described species employed more than one line ofevidence, with molecular data used in ~6% of the studies. These same trends have been discovered inother animal groups, and therefore we find it logical that taxonomists face an uphill challenge whenjustifying the scientific rigor of their field and securing the needed resources. To move taxonomyforward, we make recommendations that, if implemented, will enhance its rigor, repeatability, andscientific standards.
Ključne besede: taxonomy, taxonomic crisis, species concepts, data management, monographic research
Objavljeno v DiRROS: 16.07.2024; Ogledov: 110; Prenosov: 52
.pdf Celotno besedilo (442,22 KB)
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30.
New records of rarely reported species in the Mediterranean Sea (July 2023)
Daniele Grech, Giorgos Chatzigeorgiou, Emanuele Asciutto, Rigers Bakiu, Pietro Battaglia, Chaima Ben-Grira, Lovrenc Lipej, Borut Mavrič, Domen Trkov, 2023, izvirni znanstveni članek

Povzetek: This Collective Article presents new information about the occurrence of 23 marine taxa that belong to five Phyla: two Chlorophyta, one Annelida, six Mollusca, three Arthropoda, eleven Chordata (one Ascidiacea, one Elasmobranchii and nine Teleostei) and extending from the Western Mediterranean to the Levantine Sea. All these records were reported from nine countries from the western to the eastern Mediterranean Sea, with a broad biogeographical coverage as follows: Spain: first records of the sacoglossans Cyerce graeca and Placida tardyi for the Alboran Sea and first records of the nudibranch Marionia gemmii for the Mediterranean waters of Spain; first records of nudibranch Algarvia alba in the Mediterranean Sea. Italy: First report of the long-legged crab Paragalene longicrura, a further new Mediterranean record of the rare offshore rockfish Pontinus kuhlii, first documented record of the spiny butterfly ray Gymnura altavela in Sardinia (Tyrrhenian Sea), new record of the red‐spotted wrasse Lappanella fasciata from the Messina Strait, first documented record of the rarely observed brown moray Gymnothorax unicolor in the Ionian coast, first record of the colonial ascidian Botrylloides israeliensis, first record of the Morocco dentex Dentex maroccanus, first record of mottled shore crab Pachygrapsus maurus and of an adult specimen of barracudina Lestidiops sphyrenoides in the Adriatic Sea, and further new Mediterranean records of Ross worm Sabellaria spinulosa along the same coast. Tunisia: second record of smalleye squaretail Tetragonurus cuvieri from the African Mediterranean coast. Slovenia: first records of the sea slug Trapania graeffei and Melanochlamys wildpretii, with the last one also representing the northernmost finding of this species. Croatia: northernmost record of the endangered twaite shad Alosa fallax in the Adriatic coast. Albania: first records of the Mediterranean spearfish Tetrapturus belone. Türkiye: first record from the Aegean coasts for Türkiye of the green macroalgae Cladophora battersii and Valonia aegagropila. Israel: first record of the skeleton shrimp Caprella acanthifera in the Southeastern Mediterranean Sea. Syria: first record of the Smooth grenadier Nezumia aequalis from Syrian marine waters.
Ključne besede: rare species, gillrakers, Levantine Sea, Mediterranean Sea
Objavljeno v DiRROS: 12.07.2024; Ogledov: 104; Prenosov: 130
.pdf Celotno besedilo (7,33 MB)
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