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41.
42.
Genetic aspects linked to production and use of forest reproductive material (FRM) : collecting scientific evidence for developing guidelines and decision support tools for effective FRM management
Dušan Gömöry, Katri Himanen, Mari Mette Tollefsrud, Claes Uggla, Hojka Kraigher, Sandor Bordacs, Paraskevi Alizoti, Stuart A'Hara, Aline Frank, Gunnar Friis Proschowsky, Josef Frýdl, Thomas Geburek, Monique Guibert, Mladen Ivanković, Ana Jurše, Stuart Kennedy, Jan Kowalczyk, Heike Liesebach, Tiit Maaten, Andrej Pilipović, Roberta Proietti, Volker Schneck, Alain Servais, Brynjar Skúlason, Christoph Sperisen, Frank Wolter, Tefide Yüksel, Michele Bozzano, 2021, slovar, enciklopedija, leksikon, priročnik, atlas, zemljevid

Povzetek: This report summarises the current state of knowledge in genetic aspects linked to the production and use of forest reproductive material (FRM). The first chapter describes the different categories of FRM, considers the strategic choice between artificial and natural regeneration in the face of climate change, and articulates the need for and purposes of FRM. Chapter 2 outlines the FRM production chain, in terms of: i) FRM approval, management, collection and certification (seed sources, stands, orchards, plus trees and clones others); ii) Testing standards and examples; iii) Effect of seed and seedling material not intended for use as FRM on forest genetic resources; iv) Breeding effects on basic material including conservation strategy; v) Harvesting, processing and storage of seeds; vi) Nursery practices; vii) Certification and Traceability; and viii) FRM Trading and Transport. Chapter 3 examines FRM with regard to: i) Forest regeneration strategies % especially considering climate change, and ii) Assisted migration and available decision support tools. Chapter 4 provides a detailed overview of forest establishment methods, and chapter 5 looks at keeping records of seed origin to improve forest management. The final chapter offers 38 recommendations arising from the review. This work is the result of an international collaboration rooted in EUFORGEN for more than two decades. It is built on the firm belief that the genetic element is decisive for the creation of a resilient forest capable of surviving threats and adapting to changes, thus enabling the evolution of ecosystems and the conservation of the productive landscape.
Ključne besede: forest reproductive material
Objavljeno v DiRROS: 05.11.2021; Ogledov: 879; Prenosov: 478
.pdf Celotno besedilo (5,81 MB)
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43.
Somatic mutations and the risk of undifferentiated autoinflammatory disease in MDS : an under-recognized but prognostically important complication
Abdulla Watad, Mark Kačar, Nicola Luigi Bragazzi, Qiao Zhou, Miriam Jassam, Jan Taylor, Eve Roman, Alexandra Smith, Richard A. Jones, Howard Amital, 2021, izvirni znanstveni članek

Povzetek: Objectives: We theorized that myelodysplastic syndrome (MDS) with somatic mutations and karyotype abnormalities are associated with autoinflammation, and that the presence of autoinflammatory disease affected prognosis in MDS. Methods: One hundred thirty-four MDS patients were assessed for the prevalence of autoinflammatory complications and its link with karyotypes and somaticmutation status. Autoinflammatory complications were described either as well-defined autoinflammatory diseases (AD) or undifferentiated "autoinflammatory disease" (UAD) (defined as CRP over 10.0 mg/L on five consecutive occasions, taken at separate times and not explained by infection). Several patient characteristics including demographic, clinical, laboratory, cytogenetics charts, and outcomes, were compared between different groups. Results: Sixty-two (46.3%) patients had an autoinflammatory complication manifesting as arthralgia (43.5% vs. 23.6%, p = 0.0146), arthritis (30.6% vs. 15.3%, p = 0.0340), skin rash (27.4% vs. 12.5%, p = 0.0301), pleuritis (14.5% vs. 4.2%, p = 0.0371) and unexplained fever (27.4% vs. 0%, p < 0.0001). AD were found in 7.4% of MDS patients (with polymyalgia rheumatic being the most frequently one). Classical autoimmune diseases were found only in 4 MDS patients (3.0%). Transcription factor pathway mutations (RUNX1, BCOR, WTI, TP53) (OR 2.20 [95%CI 1.02-4.75], p = 0.0451) and abnormal karyotypes (OR 2.76 [95%CI 1.22-6.26], p = 0.0153) were associated with autoinflammatory complications. Acute leukaemic transformation was more frequent in MDS patients with autoinflammatory features than those without (27.4% vs. 9.7%, p = 0.0080). Conclusions: Autoinflammatory complications are common inMDS. Somatic mutations of transcription factor pathways and abnormal karyotypes are associated with greater risk of autoinflammatory complications, which are themselves linked to malignant transformation and a worse prognosis.
Ključne besede: myelodysplastic syndromes - genetics, autoinflammation, undifferentiated autoinflammatory disease, molecular characterization, somatic mutations
Objavljeno v DiRROS: 31.03.2021; Ogledov: 1204; Prenosov: 814
.pdf Celotno besedilo (684,58 KB)
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44.
Global guidelines for the sustainable use of non-native trees to prevent tree invasions and mitigate their negative impacts
Giuseppe Brundu, Aníbal Pauchard, Petr Pyšek, Jan Pergl, Anja M. Bindewald, Antonio Brunori, Susan Canavan, Thomas Campagnaro, Laura Celesti-Grapow, Michele de Sá Dechoum, Marjana Westergren, 2020, izvirni znanstveni članek

Povzetek: Sustainably managed non-native trees deliver economic and societal benefits with limited risk of spread to adjoining areas. However, some plantations have launched invasions that cause substantial damage to biodiversity and ecosystem services, while others pose substantial threats of causing such impacts. The challenge is to maximise the benefits of non-native trees, while minimising negative impacts and preserving future benefits and options. A workshop was held in 2019 to develop global guidelines for the sustainable use of non-native trees, using the Council of Europe % Bern Convention Code of Conduct on Invasive Alien Trees as a starting point. The global guidelines consist of eight recommendations: 1) Use native trees, or non-invasive non-native trees, in preference to invasive non-native trees; 2) Be aware of and comply with international, national, and regional regulations concerning non-native trees; 3) Be aware of the risk of invasion and consider global change trends; 4) Design and adopt tailored practices for plantation site selection and silvicultural management; 5) Promote and implement early detection and rapid response programmes; 6) Design and adopt tailored practices for invasive non-native tree control, habitat restoration, and for dealing with highly modified ecosystems; 7) Engage with stakeholders on the risks posed by invasive non-native trees, the impacts caused, and the options for management; and 8) Develop and support global networks, collaborative research, and information sharing on native and non-native trees. The global guidelines are a first step towards building global consensus on the precautions that should be taken when introducing and planting non-native trees. They are voluntary and are intended to complement statutory requirements under international and national legislation. The application of the global guidelines and the achievement of their goals will help to conserve forest biodiversity, ensure sustainable forestry, and contribute to the achievement of several Sustainable Development Goals of the United Nations linked with forest biodiversity.
Ključne besede: biological invasions, code of conduct, environmental policy and legislation, invasion science, stakeholder engagement, stakeholder participation, sustainable forestry
Objavljeno v DiRROS: 26.01.2021; Ogledov: 1314; Prenosov: 866
.pdf Celotno besedilo (1,34 MB)
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45.
Decrease in cellular nanovesicles concentration in blood of athletes more than 15 hours after marathon
Zala Jan, Mitja Drab, Damjana Drobne, Apolonija Bedina Zavec, Mojca Benčina, Barbara Drašler, Matej Hočevar, Judita Lea Krek, Ljubiša Pađen, Manca Pajnič, Neža Repar, Boštjan Šimunič, Roman Štukelj, Veronika Kralj-Iglič, 2021, izvirni znanstveni članek

Povzetek: Introduction: Cellular nanovesicles (CNVs), that are shed from cells, have been recognized as promising indicators of health status. We analyzed the effect of long-distance running on concentration of CNVs, along with some standard blood parameters, in 27 athletes two days before and > 15 hours after physical effort. Methods: CNVs were isolated by repetitive centrifugation and washing of samples, and assessed by flow cytometry. Cholinesterase (ChE) and glutathione S-transferase (GST) activity were measured spectrophotometrically. Interleukin 6 (IL-6) and tumor necrosis factor-% (TNF-%) concentrations were measured using enzyme-linked immunosorbent assay (ELISA). C-reactive protein (CRP) was measured with immunoturbidimetric determination and lipidogram parameters were measured by enzymatic colorimetric assay. Flow cytometry was used for blood cell count and mean platelet volume (MPV) measurement. Results: More than 15 hours after physical effort a decrease was found in CNVs% concentration in isolates from blood (46%; p< 0.05), in ChE activity in whole blood (47%; p< 0.001), in plasma (34%; p< 0.01), and in erythrocyte suspension (54%; p< 0.001), as well as in GST activity in erythrocyte suspension (16%; p< 0.01) and in IL-6 concentration in plasma (63%; p< 0.05). We found no change in GST activity in plasma and in TNF-% concentration in plasma. Correlations (> 0.8; p< 0.001) between CNVs% concentration and ChE activity, and GST activity, respectively, in erythrocyte suspension were found. Conclusion: We found that > 15 hours post-physical effort, CNVs% concentration was below the initial value, concomitant with other measured parameters: ChE and GST activity as well as IL-6 concentration, indicating a favorable effect of physical effort on health status. CNVs% concentration and ChE activity in isolates from peripheral blood proved to have potential as indicators of the response of the human body to inflammation after physical effort. Physical activity should be considered as an important factor in preparation of subjects for blood sampling in procedures focusing on CNV-containing diagnostic and therapeutic compounds.
Ključne besede: membrane vesiculation, physical effort, blood samples, inflammation process, cellular nanovesicles, marathon
Objavljeno v DiRROS: 25.01.2021; Ogledov: 1337; Prenosov: 1643
.pdf Celotno besedilo (1,88 MB)
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46.
Platformne storitve
Ana Robnik, Andrej Ciglič, Aleš Balanč, Dušan Gabrijelčič, Jan Porekar, Arso Savanović, Polona Škraba, Roman Kužnar, Ignac Zupan, 2015, objavljeni znanstveni prispevek na konferenci

Objavljeno v DiRROS: 08.12.2020; Ogledov: 1325; Prenosov: 396
.pdf Celotno besedilo (608,68 KB)

47.
Growth-limiting factors and climate response variability in Norway spruce (Picea abies L.) along an elevation and precipitation gradients in Slovenia
Jernej Jevšenak, Ivan Tychkov, Jožica Gričar, Tom Levanič, Jan Tumajer, Peter Prislan, Domen Arnič, Margarita Popkova, Vladimir V. Shishov, 2020, izvirni znanstveni članek

Povzetek: Norway spruce (Picea abies L.) is among the most sensitive coniferous species to ongoing climate change. However, previous studies on its growth response to increasing temperatures have yielded contrasting results (from stimulation to suppression), suggesting highly site-specific responses. Here, we present the first study that applies two independent approaches, i.e. the nonlinear, process-based Vaganov-Shashkin (VS) model and linear daily response functions. Data were collected at twelve sites in Slovenia differing in climate regimes and ranging elevation between 170 and 1300 m a.s.l. VS model results revealed that drier Norway spruce sites at lower elevations are mostly moisture limited, while moist high-elevation sites are generally more temperature limited. Daily response functions match well the pattern of growth-limiting factors from the VS model and further explain the effect of climate on radial growth: prevailing growth-limiting factors correspond to the climate variable with higher correlations. Radial growth correlates negatively with rising summer temperature and positively with higher spring precipitation. The opposite response was observed for the wettest site at the highest elevation, which positively reacts to increased summer temperature and will most likely benefit from a warming climate. For all other sites, the future radial growth of Norway spruce largely depends on the balance between spring precipitation and summer temperature.
Ključne besede: Vaganov-Shashkin model, climate-growth correlations, tree rings, process-based modelling, dendroTools, dendroclimatology
Objavljeno v DiRROS: 21.10.2020; Ogledov: 1270; Prenosov: 1009
.pdf Celotno besedilo (1,94 MB)
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48.
Vpliv sestojne zgradbe na donos medu v Sloveniji
Jan Mihelič, Janez Prešern, Milan Kobal, 2020, izvirni znanstveni članek

Povzetek: V lesni zalogi sestojev smo proučili vpliv količine medonosnih drevesnih vrst na donos medu. Za 70 čebeljih družin v Sloveniji smo uporabili podatke o donosih medu za posamezne drevesne vrste glede na čebelarsko najugodnejša leta in v radiju treh kilometrov od panja in izračunali: a) število čebeljih družin (n), b) gozdnatost (%) ter c) skupno lesno zalogo medonosnih drevesnih vrst (m3 ). Vpliva števila družin na donos medu v panj v večini primerov nismo potrdili (p > 0,05), statistično značilno pa vpliva na donos gozdnega in smrekovega medu. Delež gozda je v pozitivni korelaciji (r > 0,84; p < 0,05) z donosom gozdnega medu v panj. Vpliv količine drevesnih vrst na donos medu v panj lahko statistično značilno (p < 0,05) potrdimo za vse proučevane drevesne vrste, razen za jelko. Pri drugih drevesnih vrstah (razen pri smreki) delež gozda v radiju treh kilometrov od stojišč značilno ne vpliva na donos medu. Glede na dobljene regresijske modele za posamezne medonosne drevesne vrste, med katerimi smo potrdili vpliv lesne zaloge na donos, lahko za vsako lokacijo v Sloveniji napovemo potencialne donose medu. Slednje je uporabno za izbiro lokacije za postavitev čebelnjaka in tudi za določitev lokacije za prevoz čebel na pašo.
Ključne besede: sestojna zgradba, čebelarstvo, lesna zaloga, donos medu
Objavljeno v DiRROS: 10.10.2020; Ogledov: 1896; Prenosov: 533
.pdf Celotno besedilo (481,28 KB)

49.
KEYLINK : towards a more integrative soil representation for inclusion in ecosystem scale models : I. : review and model concept
Gabrielle I. Deckmyn, Omar Flores, Mathias Mayer, Xavier Domene, Andrea Schnepf, Katrin Kuka, Kris van Looy, Daniel P. Rasse, Maria J.I. Briones, Sébastien Barot, Matty Berg, E. I. Vanguelova, Ivika Ostonen, Harry Vereecken, Laura Martinez Suz, Beat Frey, Aline Frossard, Alexei Tiunov, Jan Frouz, Tine Grebenc, Maarja Öpik, Mathieu Javaux, Alexei Uvarov, Olga Vindušková, Paul Henning Krogh, Oskar Franklin, Juan Jiménez, Jorge Curiel Yuste, 2020, izvirni znanstveni članek

Povzetek: The relatively poor simulation of the below-ground processes is a severe drawback for many ecosystem models, especially when predicting responses to climate change and management. For a meaningful estimation of ecosystem production and the cycling of water, energy, nutrients and carbon, the integration of soil processes and the exchanges at the surface is crucial. It is increasingly recognized that soil biota play an important role in soil organic carbon and nutrient cycling, shaping soil structure and hydrological properties through their activity, and in water and nutrient uptake by plants through mycorrhizal processes. In this article, we review the main soil biological actors (microbiota, fauna and roots) and their effects on soil functioning. We review to what extent they have been included in soil models and propose which of them could be included in ecosystem models. We show that the model representation of the soil food web, the impact of soil ecosystem engineers on soil structure and the related effects on hydrology and soil organic matter (SOM) stabilization are key issues in improving ecosystem-scale soil representation in models. Finally, we describe a new core model concept (KEYLINK) that integrates insights from SOM models, structural models and food web models to simulate the living soil at an ecosystem scale.
Ključne besede: soil fauna, model, Soil Organic Matter, SOM, hydrology, pore size distribution, PSD, soil biota, ecosystem
Objavljeno v DiRROS: 23.09.2020; Ogledov: 1501; Prenosov: 1238
.pdf Celotno besedilo (5,28 MB)
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50.
Pulmonary pathology and COVID-19 : lessons from autopsy : the experience of European pulmonary pathologists
Fiorella Calabrese, Federica Pezzuto, Francesco Fortarezza, Paul Hofman, Izidor Kern, Angel Panizo, Jan von der Thüsen, Sergei Timofeev, Gregor Gorkiewicz, Francesca Lunardi, 2020, izvirni znanstveni članek

Povzetek: Since its initial recognition in December 2019, Coronavirus disease 19 (COVID-19) has quickly spread to a pandemic infectious disease. The causative agent has been recognized as a novel coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), primarily affecting the respiratory tract. To date, no vaccines are available nor any specific treatment. To limit the number of infections, strict directives have been issued by governments that have been translated into equally rigorous guidelines notably for post-mortem examinations by international and national scientific societies. The recommendations for biosafety control required during specimen collection and handling have strongly limited the practice of autopsies of the COVID-19 patients to a few adequate laboratories. A full pathological examination has always been considered an important tool to better understand the pathophysiology of diseases, especially when the knowledge of an emerging disorder is limited and the impact on the healthcare system is significant. The first evidence of diffuse alveolar damage in the context of an acute respiratory distress syndrome has now been joined by the latest findings that report a more complex scenario in COVID-19, including a vascular involvement and a wide spectrum of associated pathologies. Ancillary tools such as electron microscopy and molecular biology used on autoptic tissue samples from autopsy are also significantly contributing to confirm and/or identify new aspects useful for a deeper knowledge of the pathogenetic mechanisms. This article will review and summarize the pathological findings described in COVID-19 until now, chiefly focusing on the respiratory tract, highlighting the importance of autopsy towards a better knowledge of this disease.
Ključne besede: COVID-19, SARS-CoV-2, autopsy, lung, pandemic
Objavljeno v DiRROS: 31.07.2020; Ogledov: 13373; Prenosov: 1155
.pdf Celotno besedilo (1,55 MB)
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