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Iskalni niz: "avtor" (Klemen Čandek) .

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1.
Biogeography of the Caribbean Cyrtognatha spiders
Klemen Čandek, Ingi Agnarsson, Greta Binford, Matjaž Kuntner, 2019, izvirni znanstveni članek

Povzetek: Island systems provide excellent arenas to test evolutionary hypotheses pertaining to gene flow and diversification of dispersal-limited organisms. Here we focus on an orbweaver spider genus Cyrtognatha (Tetragnathidae) from the Caribbean, with the aims to reconstruct its evolutionary history, examine its biogeographic history in the archipelago, and to estimate the timing and route of Caribbean colonization. Specifically, we test if Cyrtognatha biogeographic history is consistent with an ancient vicariant scenario (the GAARlandia landbridge hypothesis) or overwater dispersal. We reconstructed a species level phylogeny based on one mitochondrial (COI) and one nuclear (28S) marker. We then used this topology to constrain a time-calibrated mtDNA phylogeny, for subsequent biogeographical analyses in BioGeoBEARS of over 100 originally sampled Cyrtognatha individuals, using models with and without a founder event parameter. Our results suggest a radiation of Caribbean Cyrtognatha, containing 11 to 14 species that are exclusively single island endemics. Although biogeographic reconstructions cannot refute a vicariant origin of the Caribbean clade, possibly an artifact of sparse outgroup availability, they indicate timing of colonization that is much too recent for GAARlandia to have played a role. Instead, an overwater colonization to the Caribbean in mid-Miocene better explains the data. From Hispaniola, Cyrtognatha subsequently dispersed to, and diversified on, the other islands of the Greater, and Lesser Antilles. Within the constraints of our island system and data, a model that omits the founder event parameter from biogeographic analysis is less suitable than the equivalent model with a founder event.
Ključne besede: biogeography, spiders
Objavljeno v DiRROS: 23.07.2024; Ogledov: 92; Prenosov: 72
.pdf Celotno besedilo (1,62 MB)
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2.
Machine learning approaches identify male body size as the most accurate predictor of species richness
Klemen Čandek, Urška Pristovšek, Matjaž Kuntner, 2020, izvirni znanstveni članek

Povzetek: Background A major challenge in biodiversity science is to understand the factors contributing to the variability of species richness –the number of different species in a community or region - among comparable taxonomic lineages. Multiple biotic and abiotic factors have been hypothesized to have an effect on species richness and have been used as its predictors, but identifying accurate predictors is not straightforward. Spiders are a highly diverse group, with some 48,000 species in 120 families; yet nearly 75% of all species are found within just the ten most speciose families. Here we use a Random Forest machine learning algorithm to test the predictive power of different variables hypothesized to affect species richness of spider genera. Results We test the predictive power of 22 variables from spiders’ morphological, genetic, geographic, ecological and behavioral landscapes on species richness of 45 genera selected to represent the phylogenetic and biological breath of Araneae. Among the variables, Random Forest analyses find body size (specifically, minimum male body size) to best predict species richness. Multiple Correspondence analysis confirms this outcome through a negative relationship between male body size and species richness. Multiple Correspondence analyses furthermore establish that geographic distribution of congeneric species is positively associated with genus diversity, and that genera from phylogenetically older lineages are species poorer. Of the spider-specific traits, neither the presence of ballooning behavior, nor sexual size dimorphism, can predict species richness. Conclusions We show that machine learning analyses can be used in deciphering the factors associated with diversity patterns. Since no spider-specific biology could predict species richness, but the biologically universal body size did, we believe these conclusions are worthy of broader biological testing. Future work on other groups of organisms will establish whether the detected associations of species richness with small body size and wide geographic ranges hold more broadly.
Ključne besede: biodiversity, lineage diversity, species traits, spiders, phylogenetic diversity, species distribution, random forest, multiple correspondence analysis
Objavljeno v DiRROS: 22.07.2024; Ogledov: 235; Prenosov: 226
.pdf Celotno besedilo (1,78 MB)
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3.
Biogeographical history of golden orbweavers : chronology of a global conquest
Eva Turk, Klemen Čandek, Simona Kralj-Fišer, Matjaž Kuntner, 2020, izvirni znanstveni članek

Povzetek: Aim A wholistic biogeographical reconstruction should combine a phylogeny with specifics of organismal biology, plate tectonics and consequent probabilities of historic dispersal events. Here, we demonstrate this approach by reconstructing the geographical origin and sequence of intercontinental colonization of the golden orbweaving spiders, a global clade. We test two alternative hypotheses about their ancestral range. Due to the highest contemporary species diversity in Africa, the ‘Out of Africa’ hypothesis predicts the Afrotropics as their most likely ancestral area. The alternative, ‘Out of West Burma’ hypothesis aims to explain a Burmese amber fossil as stem nephilid. Because the West Burma block probably detached from Australia, then rafted towards Laurasia, either on its own or with India, this hypothesis predicts either Australasia or Indomalaya (or both) as the ancestral area. Location Worldwide. Taxon Golden orbweaving spiders, family Nephilidae. Methods We construct an expanded phylogeny of nephilid spiders and apply RASP (Reconstruct Ancestral State in Phylogenies) to infer their global biogeographical history. We fit the data to six integrated biogeographical models: DEC, DIVALIKE, BAYAREALIKE and their +j variants. We fine-tune the analysis by evaluating varying probabilities of dispersal between geographical areas throughout the clade's evolutionary history. We use the physical distance between the areas as a proxy for dispersal probabilities, thus accounting for plate tectonics. Results The best supported model reconstructs both Australasia and Indomalaya as ancestral area. In several parts of the phylogeny, these areas persist for the estimated 130-million-year evolutionary history. However, numerous intercontinental shifts in nephilid biogeographical history are also inferred. Since nephilid origins are clearly Gondwanan, our study supports the interpretations that Burmese amber contains Gondwanan biota. Main conclusions These results are consistent with the Out of West Burma hypothesis but reject the Out of Africa hypothesis. That certain clades persist in their ancestral ranges while others may shift continents aligns well with the known nephilid biology. Our methodological approach that assesses organismal specific dispersal probabilities through concrete distances measured though time slices of the Earth's history can be applied to biogeographical reconstruction of any lineage.
Ključne besede: spiders, golden orbweavers, Nephilidae, reconstruction of lineage, biogeography
Objavljeno v DiRROS: 22.07.2024; Ogledov: 97; Prenosov: 132
.pdf Celotno besedilo (1,90 MB)
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4.
Biogeography of Long-Jawed Spiders Reveals Multiple Colonization of the Caribbean
Klemen Čandek, Ingi Agnarsson, Greta Binford, Matjaž Kuntner, 2021, izvirni znanstveni članek

Povzetek: Dispersal ability can affect levels of gene flow thereby shaping species distributions and richness patterns. The intermediate dispersal model of biogeography (IDM) predicts that in island systems, species diversity of those lineages with an intermediate dispersal potential is the highest. Here, we tested this prediction on long-jawed spiders (Tetragnatha) of the Caribbean archipelago using phylogenies from a total of 318 individuals delineated into 54 putative species. Our results support a Tetragnatha monophyly (within our sampling) but reject the monophyly of the Caribbean lineages, where we found low endemism yet high diversity. The reconstructed biogeographic history detects a potential early overwater colonization of the Caribbean, refuting an ancient vicariant origin of the Caribbean Tetragnatha as well as the GAARlandia land-bridge scenario. Instead, the results imply multiple colonization events to and from the Caribbean from the mid-Eocene to late-Miocene. Among arachnids, Tetragnatha uniquely comprises both excellently and poorly dispersing species. A direct test of the IDM would require consideration of three categories of dispersers; however, long-jawed spiders do not fit one of these three a priori definitions, but rather represent a more complex combination of attributes. A taxon such as Tetragnatha, one that readily undergoes evolutionary changes in dispersal propensity, can be referred to as a ‘dynamic disperser’.
Ključne besede: Tetragnatha, dynamic disperser, intermediate dispersal model of biogeography, GAARlandia
Objavljeno v DiRROS: 19.07.2024; Ogledov: 81; Prenosov: 23
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5.
Increasing information content and diagnosability in family-level classifications
Matjaž Kuntner, Klemen Čandek, Matjaž Gregorič, Eva Turk, A. Chris Hamilton, Lisa Chamberland, James Starrett, Ren-Chung Cheng, Jonathan A. Coddington, Ingi Agnarsson, Jason E. Bond, 2023, izvirni znanstveni članek

Povzetek: Higher-level classifications often must account for monotypic taxa representing depauperate evolutionary lineages and lacking synapomorphies of their better-known, well-defined sister clades. In a ranked (Linnean) or unranked (phylogenetic) classification system, discovering such a depauperate taxon does not necessarily invalidate the rank classification of sister clades. Named higher taxa must be monophyletic to be phylogenetically valid. Ranked taxa above the species level should also maximize information content, diagnosability, and utility (e.g., in biodiversity conservation). In spider classification, families are the highest rank that is systematically catalogued, and incertae sedis is not allowed. Consequently, it is important that family level taxa be well defined and informative. We revisit the classification problem of Orbipurae, an unranked suprafamilial clade containing the spider families Nephilidae, Phonognathidae, and Araneidae sensu stricto. We argue that, to maximize diagnosability, information content, conservation utility, and practical taxonomic considerations, this “splitting” scheme is superior to its recently proposed alternative, which lumps these families together as Araneidae sensu lato. We propose to redefine Araneidae and recognize a monogeneric spider family, Paraplectanoididae fam. nov. to accommodate the depauperate lineage Paraplectanoides. We present new subgenomic data to stabilize Orbipurae topology which also supports our proposed family-level classification. Our example from spiders demonstrates why classifications must be able to accommodate depauperate evolutionary lineages, e.g., Paraplectanoides. Finally, although clade age should not be a criterion to determine rank, other things being equal, comparable ages of similarly ranked taxa do benefit comparative biology.
Ključne besede: classification, family rank, phylogenomics, systematics, monophyly, spider phylogeny, zoology
Objavljeno v DiRROS: 12.07.2024; Ogledov: 116; Prenosov: 103
.pdf Celotno besedilo (1,63 MB)
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