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Povzetek: Background Pneumocystis jirovecii pneumonia (PCP) is a common and potentially fatal opportunistic infection in immunocompromised non-HIV individuals. There are problems with clinical and diagnostic protocols for PCP that lack sensitivity and specificity. We designed a retrospective study to compared several methods that were used in diagnostics of PCP. Patients and methods One hundred and eight immunocompromised individuals with typical clinical picture for PCP and suspicious radiological findings were included in the study. Serum samples were taken to measure the values of (1-3)-[beta]-D-glucan (Fungitell, Associates of Cape Cod, USA). Lower respiratory tract samples were obtained to perform direct immunofluorescence (DIF, MERIFLUOR Pneumocystis, Meridian, USA) stain and real-time PCR (qPCR). Results Fifty-four (50%) of the 108 patients in our study had (1-3)-[beta]-D-glucan > 500 pg/ml. Patients that had (1-3)-[beta]-D-glucan concentrations < 400 pg/ml in serum, had mean threshold cycles (Ct) 35.43 +- 3.32 versus those that had (1-3)-[beta]-D-glucan concentrations >400 pg/mL and mean Ct of 28.97 +- 5.27 (P < 0.001). If we detected P. jirovecii with DIF and qPCR than PCP was proven. If the concentration of (1-3)-[beta]-D-glucan was higher than 400 pg/ml and Ct of qPCR was below 28.97 +- 5.27 than we have been able be certain that P. jirovecii caused pneumonia (odds ratio [OR] 2.31, 95% confidence interval [CI] 1.62-3.27, P < 0.001). Conclusions Measurement of (1-3)-[beta]-D-glucan or qPCR alone could not be used to diagnose PCP. Diagnostic cut-off value for (1-3)-[beta]-D-glucan > 400pg/ml and qPCR below 30 Ct, allow us to conclude that patient has PCP. If the values of (1-3)-[beta]-D-glucan are < 400 pg/ml and qPCR is above 35 Ct than colonization with P. jirovecii is more possible than PCP.
Ključne besede: Pneumocystis jirovecii pneumonia, real-time PCR, non-HIV-infected patients
Objavljeno v DiRROS: 12.07.2024; Ogledov: 242; Prenosov: 171
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Povzetek: Hypersensitive response (HR)-conferred resistance is an effective defense response that can be determined by the N resistance genes. HR is manifested as the formation of cell death zones on inoculated leaves. Here, a protocol for studying the rate of cell death initiation by imaging inoculated leaves in the time between the cell death initiation and the cell death appearance using a digital microscope is presented. The digital microscope enables a continuous imaging process in desired intervals, which allows an accurate determination of cell death initiation rate up to minutes exactly, as opposed to hours in traditional methods. Imaging with the digital microscope is also independent of light and can therefore be used during day and night without disturbing the circadian rhythm of the plant. Different pathosystems resulting in programmed cell death development could be studied using this protocol with minor modifications. Overall, the protocol thus allows simple, accurate, and inexpensive identification of cell death initiation rate.
Ključne besede: digital microscope, cell death, inoculated leaves
Objavljeno v DiRROS: 12.07.2024; Ogledov: 314; Prenosov: 149
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Povzetek: This Collective Article presents new information about the occurrence of 23 marine taxa that belong to five Phyla: two Chlorophyta, one Annelida, six Mollusca, three Arthropoda, eleven Chordata (one Ascidiacea, one Elasmobranchii and nine Teleostei) and extending from the Western Mediterranean to the Levantine Sea. All these records were reported from nine countries from the western to the eastern Mediterranean Sea, with a broad biogeographical coverage as follows: Spain: first records of the sacoglossans Cyerce graeca and Placida tardyi for the Alboran Sea and first records of the nudibranch Marionia gemmii for the Mediterranean waters of Spain; first records of nudibranch Algarvia alba in the Mediterranean Sea. Italy: First report of the long-legged crab Paragalene longicrura, a further new Mediterranean record of the rare offshore rockfish Pontinus kuhlii, first documented record of the spiny butterfly ray Gymnura altavela in Sardinia (Tyrrhenian Sea), new record of the red‐spotted wrasse Lappanella fasciata from the Messina Strait, first documented record of the rarely observed brown moray Gymnothorax unicolor in the Ionian coast, first record of the colonial ascidian Botrylloides israeliensis, first record of the Morocco dentex Dentex maroccanus, first record of mottled shore crab Pachygrapsus maurus and of an adult specimen of barracudina Lestidiops sphyrenoides in the Adriatic Sea, and further new Mediterranean records of Ross worm Sabellaria spinulosa along the same coast. Tunisia: second record of smalleye squaretail Tetragonurus cuvieri from the African Mediterranean coast. Slovenia: first records of the sea slug Trapania graeffei and Melanochlamys wildpretii, with the last one also representing the northernmost finding of this species. Croatia: northernmost record of the endangered twaite shad Alosa fallax in the Adriatic coast. Albania: first records of the Mediterranean spearfish Tetrapturus belone. Türkiye: first record from the Aegean coasts for Türkiye of the green macroalgae Cladophora battersii and Valonia aegagropila. Israel: first record of the skeleton shrimp Caprella acanthifera in the Southeastern Mediterranean Sea. Syria: first record of the Smooth grenadier Nezumia aequalis from Syrian marine waters.
Ključne besede: rare species, gillrakers, Levantine Sea, Mediterranean Sea
Objavljeno v DiRROS: 12.07.2024; Ogledov: 292; Prenosov: 241
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Povzetek: The presence of bacteria and viruses in freshwater represents a global health risk. The substantial spatial and temporal variability of microbes leads to difficulties in quantifying the risks associated with their presence in freshwater. Fine particles, including bacteria and viruses are transported and accumulated into shallow streambed (i.e., benthic) sediment, delaying the downstream transmission during baseflow conditions but contributing to their resuspension and transport downstream during stormflow events. Direct measurements of pathogen accumulation in benthic sediments are rare. Until now, the dynamic role of benthic sediment as both a store and source of microbes, has not been quantified. In this study, we analyze microbial abundance in benthic sediment along a 1 km reach of an intermittent Mediterranean stream receiving inputs from the effluent of a wastewater treatment plant, a known point source of microbes in streams. We sampled benthic sediment during a summer drought when the wastewater effluent constituted 100 % of the stream flow, and thus, large accumulation and persistence of pathogens along the streambed was expected. We measured the abundance of total bacteria, Escherichia coli (as a fecal indicator), and presence of enteric rotavirus (RoV) and norovirus (NoV). The abundance of E. coli, based on qPCR detection, was high (4.99∙102 gc /cm2) along the first 100 m downstream of the wastewater effluent input and in general decreased with distance from the source, with presence of RoV and NoV along the study reach. A particle tracking model was applied, that uses stream water velocity as an input, and accounts for microbial exchange into, immobilization, degradation, and resuspension out of benthic sediment during baseflow and stormflow. Rates of exchange into benthic sediment were 3 orders of magnitude higher during stormflow, but residence times were proportionately lower, resulting in increased longitudinal connectivity from up to downstream during stormflow. Model simulations demonstrated mechanistically how the rates of exchange into and out of the benthic sediment resulted in benthic sediment to act as a store during baseflow and a source during stormflow.
Ključne besede: E. coli, norovirus, rotavirus, benthic sediment, pathogen transport, microbial risk
Objavljeno v DiRROS: 12.07.2024; Ogledov: 283; Prenosov: 205
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Povzetek: Anaplastic thyroid cancer (ATC) is one of the most aggressive tumors. The aim of the study was to determine the correlation between a higher dietary intake of iodine, frequency of ATC and the characteristics of ATC, and to find out how often patients with ATC had a history of radioiodine (RAI) therapy. Patients and methods. This retrospective study included 220 patients (152 females, 68 males; mean age 68 years) with ATC who were treated in our country from 1972 to 2017. The salt was iodinated with 10 mg of potassium iodide/ kg before 1999, and with 25 mg of potassium iodide/kg thereafter. The patients were assorted into 15-year periods: 1972%1986, 1987%2001, and 2002%2017. Results. The incidence of ATC decreased after a higher iodination of salt (p = 0.04). Patients are nowadays older (p = 0.013) and have less frequent lymph node metastases (p = 0.012). The frequency of distant metastases did not change over time. The median survival of patients in the first, second, and third periods was 3, 4, and 3 months, respectively (p < 0.05). The history of RAI therapy was present in 7.7% of patients. Conclusions. The number of patients with a history of RAI therapy did not change statistically over time. The incidence of ATC in Slovenia decreased probably because of higher salt iodination.
Ključne besede: anaplastic thyroid carcinoma, iodination of salt, treatment, survival
Objavljeno v DiRROS: 12.07.2024; Ogledov: 230; Prenosov: 132
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