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1.
Metabolic potential, respiration rate and their relationship in offspring of different sizes of marble trout (Salmo marmoratus Cuvier)
Anton Brancelj, Tatjana Simčič, Dušan Jesenšek, 2015, izvirni znanstveni članek

Povzetek: The size and composition of fish eggs are related to female’s characteristics, such as age, size and individual conditions, and they have an impact on the properties of offspring that are important for their fitness. Electron transport system (ETS) activity and respiration rate (R) of early life history stages (i.e. non-fertilized eggs, eggs at eyed stage and larvae with yolk sac) of 13 females of marble trout (Salmo marmoratus) were measured separately in order to determine their metabolic properties in relation to size. The results showed that larger females produced larger eggs in higher numbers. Growth experiments on the survival of offspring of a single female revealed that the survival rate of early embryos was higher for smaller eggs during the earliest stages, but ultimately the percentage of surviving larvae did not correlate with egg size. The ETS activities and respiration rates of non-fertilized eggs, eyed eggs and larvae differed significantly between 13 females. Both parameters increased with increasing dry mass of the early life history stages, but the increase of respiration rate was greater than that of ETS activity. The lower ETS/R ratios in larger individuals therefore indicate that their energy metabolism was less adaptable to environmental changes than that of smaller ones. Larger egg size could be an advantage under favourable conditions, whereas smaller size could be optimal under stressing circumstances in which the higher metabolic potential enables production of the energy required for metabolism. This is first report on the relationship between ETS activity and respiration rate of the early life history stages in salmonids.
Ključne besede: Salmo marmoratus, fitness, metabolism, ETS activity, ETS/R ratio, fishes
Objavljeno v DiRROS: 29.07.2024; Ogledov: 24; Prenosov: 8
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Testing the influence of sediment granulometry on heterotrophic respiration with a new laboratory flow-through system
Nataša Mori, Barbara Debeljak, David Kocman, Tatjana Simčič, 2017, izvirni znanstveni članek

Povzetek: Purpose Increased sedimentation due to land use intensification is increasingly affecting carbon processing in streams and rivers around the globe. This study describes the design of a laboratory-scale flow-through incubation system as a tool for the rapid estimation of sediment respiration. The measurements were compared with those obtained using an in situ closed chamber respiration method. The influence of sediment size on respiration rates was also investigated. Materials and methods Measurements were conducted on a pre-alpine gravel-bed river sediment separated into the following grain size fractions: > 60 mm (14.3%), 60–5 mm (60.2%), 5–2 mm (13.7%), 2–0.063 mm (11.1%) and <0.063 mm (0.6%). Concurrently, in situ and laboratory measurements were carried out on a naturally heterogeneous sediment. In situ respiration was determined in closed chambers as O2 consumption over time, while in the laboratory, respiration was determined using flow-through respiration chambers. Oxygen concentrations were measured using a fibre-optic oxygen meter positioned at the inflow and outflow from the chamber. Results and discussion The mean respiration rates within naturally mixed riverbed sediments were 1.27 ± 0.3 mg O2 dm−3 h−1 (n = 4) and 0.77 ± 0.1 mg O2 dm−3 h−1 (n = 3) for the flow-through chamber system and closed chamber system, respectively. Respiration rates were statistically significantly higher in the flow-through chamber system (t test, p < 0.05), indicating that closed chamber measurements underestimated the oxygen consumption within riverbed sediments. Sediment grain size was found to significantly affect respiration rates in both systems (ANOVA, p < 0.001) with the fine sediment fraction (particle size <0.063 mm) having the highest respiration rate (rflow-through = 51 ± 23 mg O2 dm−3 h−1). The smallest fractions (2–0.063 and <0.063 mm), which represent approximately 12% of total sediment volume, contributed 60% of total respiration. Conclusions The study demonstrated that flow-through respiration chambers more accurately estimate the respiration rate within riverbed sediments than in situ closed chambers, since the former experiment imitates the natural conditions where continuous interstitial flow occurs in the sediments. We also demonstrated that fine sediments (<5 mm) substantially contribute to heterotrophic respiration in the studied gravel-bed river.
Ključne besede: carbon fluxes, freshwaters, geomorphology, hyporheic zone, respiration, sediments
Objavljeno v DiRROS: 24.07.2024; Ogledov: 55; Prenosov: 37
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Respiration rates in shallow lakes of different types : contribution of benthic microorganisms, macrophytes, plankton and macrozoobenthos
Janusz Żbikowski, Tatjana Simčič, Franja Pajk, Małgorzata Poznańska-Kakareko, Tomasz Kakareko, Jarosław Kobak, 2019, izvirni znanstveni članek

Povzetek: The determination of the metabolic activity of organisms at various trophic levels is crucial for the proper assessment of the energy flow through the ecosystem, which is the basic process determining ecosystem functioning. We estimated the respiration rate in nine shallow, eutrophic lakes (macrophyte-dominated and phytoplankton-dominated) from north-eastern Poland. Respiratory carbon loss (RCL) through bottom microbial communities, macrophytes, plankton and macrozoobenthos was estimated by measuring the Electron Transport System activity. The shares of the particular ecosystem components in respiration processes differed among the lake types and seasons. The bottom microbial communities contributed most to the RCL (from 50% in the macrophyte-dominated lakes to 90% in the shallower phytoplankton-dominated lakes) except in macrophytes-dominated lakes in summer, where the macrophyte contribution prevailed (80%). The contribution of plankton was considerable only in the deeper phytoplankton-dominated lakes (20%). Macrozoobenthos was important (20%) only in the macrophyte-dominated lakes in spring and autumn. The RCL through bottom microbial communities was substantially higher in the shallow lakes (especially phytoplankton-dominated) than in deep, stratified eutrophic lakes. Shallow eutrophic lakes can be highly productive due to intensive organic matter mineralization at the bottom and rapid flow and cycling of carbon and nutrients resulting from their polymictic character.
Ključne besede: shallow lakes, ETS activity, respiratory carbon loss, abiotic parameters
Objavljeno v DiRROS: 23.07.2024; Ogledov: 50; Prenosov: 33
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Genotype-environment interactions rule the response of a widespread butterfly to temperature variation
Franziska Günter, Michaël Beaulieu, Kasimir F. Freiberg, Ines Welzel, Nia Toshkova, Anamarija Žagar, Tatjana Simčič, Klaus Fischer, 2020, izvirni znanstveni članek

Povzetek: Understanding how organisms adapt to complex environments is a central goal of evolutionary biology and ecology. This issue is of special interest in the current era of rapidly changing climatic conditions. Here, we investigate clinal variation and plastic responses in life history, morphology and physiology in the butterfly Pieris napi along a pan‐European gradient by exposing butterflies raised in captivity to different temperatures. We found clinal variation in body size, growth rates and concomitant development time, wing aspect ratio, wing melanization and heat tolerance. Individuals from warmer environments were more heat‐tolerant and had less melanised wings and a shorter development, but still they were larger than individuals from cooler environments. These findings suggest selection for rapid growth in the warmth and for wing melanization in the cold, and thus fine‐tuned genetic adaptation to local climates. Irrespective of the origin of butterflies, the effects of higher developmental temperature were largely as expected, speeding up development; reducing body size, potential metabolic activity and wing melanization; while increasing heat tolerance. At least in part, these patterns likely reflect adaptive phenotypic plasticity. In summary, our study revealed pronounced plastic and genetic responses, which may indicate high adaptive capacities in our study organism. Whether this may help such species, though, to deal with current climate change needs further investigation, as clinal patterns have typically evolved over long periods.
Objavljeno v DiRROS: 23.07.2024; Ogledov: 49; Prenosov: 20
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7.
Fermentative indole production via bacterial tryptophan synthase alpha subunit and plant indole-3-glycerol phosphate lyase enzymes
Lenny Ferrer, Melanie Mindt, Maria Suarez-Diez, Tatjana Jilg, Maja Zagorščak, Jin-Ho Lee, Kristina Gruden, Volker F. Wendisch, Katarina Cankar, 2022, izvirni znanstveni članek

Povzetek: Indole is produced in nature by diverse organisms and exhibits a characteristic odor described as animal, fecal, and floral. In addition, it contributes to the flavor in foods, and it is applied in the fragrance and flavor industry. In nature, indole is synthesized either from tryptophan by bacterial tryptophanases (TNAs) or from indole-3-glycerol phosphate (IGP) by plant indole-3-glycerol phosphate lyases (IGLs). While it is widely accepted that the tryptophan synthase α-subunit (TSA) has intrinsically low IGL activity in the absence of the tryptophan synthase β-subunit, in this study, we show that Corynebacterium glutamicum TSA functions as a bona fide IGL and can support fermentative indole production in strains providing IGP. By bioprospecting additional bacterial TSAs and plant IGLs that function as bona fide IGLs were identified. Capturing indole in an overlay enabled indole production to titers of about 0.7 g L–1 in fermentations using C. glutamicum strains expressing either the endogenous TSA gene or the IGL gene from wheat.
Ključne besede: Corynebacterium glutamicum, indole, indole-3-glycerol phosphate lyase, tryptophan synthase α-subunit, bioprospecting, fermentative production
Objavljeno v DiRROS: 16.07.2024; Ogledov: 114; Prenosov: 57
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Is it function or fashion? : an integrative analysis of morphology, performance, and metabolism in a colour polymorphic lizard
Veronica Gomes, Anamarija Žagar, Guillem Pérez i de Lanuza, Tatjana Simčič, Miguel A. Carretero, 2022, izvirni znanstveni članek

Povzetek: Colour polymorphism may be accompanied by alternative expressions of phenotypic traits that are directly or indirectly related to fitness, and selection forces may act on the traits separately or concurrently. In polymorphic species, natural selection may act through frequency- or density-dependent mechanisms and maintain polymorphism through interactions among morphs. We used an integrative approach to examine functionally relevant and interrelated life history traits in the context of colour polymorphism in the European wall lizard (Podarcis muralis). Body, head and limb morphology, bite and locomotor performance, and physiology, particularly metabolic and antioxidant capacity, were analysed in the three pure colour morphs (yellow, orange, white) and the two mosaic morphs (yellow-orange and white-orange). Morphological differences between morphs were present but subtle and consisted mainly of variations in head length. Head size and bite force were strongly associated between and within morphs. Limb and boot morphology and locomotor performance (sprinting and climbing) were variably associated among morphs. Finally, variation in biochemical indicators of cellular metabolism and antioxidant capacity appeared to be largely independent of morphology and performance. The results provide evidence for existing and non-existing relationships between colour and morphology, performance, and physiology that could have short- and long-term effects on selection.
Ključne besede: colour morphs, sprint speed, climbing, bite force, physiology
Objavljeno v DiRROS: 16.07.2024; Ogledov: 68; Prenosov: 41
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9.
Functional responses in a lizard along a 3.5-km altitudinal gradient
Nina Guerra Serén, Rodrigo Megía-Palma, Tatjana Simčič, Miha Krofel, Fabio Maria Guarino, Catarina Pinho, Anamarija Žagar, Miguel A. Carretero, 2023, izvirni znanstveni članek

Povzetek: Aim: Physiological and metabolic performance are key mediators of the functional response of species to environmental change. Few environments offer such a multifaceted array of stressors as high-altitude habitats, which differ markedly in temperature, water availability, UV radiation and oxygen pressure compared to low-altitude habitats. Species that inhabit large altitudinal gradients are thus excellent models to study how organisms respond to environmental variation. Location: Tenerife island, Canary Islands archipelago (Spain). Taxon: Tenerife lizard (Gallotia galloti, Lacertidae). Methods: We integrated data on age structure, thermal and hydric regulatory behaviour and four metabolic and stress-related biomarkers for an insular lizard that inhabits an extreme altitudinal range (sea level to 3700 m a.s.l.), to understand how an ectotherms' age, ecophysiology and metabolism can be affected by extreme environmental variation. Results: We found marked differences in metabolic stress markers associated with altitude (particularly in the abundance of carbonyl metabolites and relative telomere length), but without a linear pattern along the altitudinal cline. Contrary to expectations, longer telomeres and lower carbonyl content were detected at the highest altitude, suggesting reduced stress in these populations. Evaporative water loss differed between populations but did not follow a linear altitudinal gradient. Lizard age structure or thermal physiological performance did not markedly change across different altitudes. Mixed signals in life-history and thermal ecology across populations and altitude suggest complex responses to variable conditions across altitude in this species. Main Conclusions: Our integrative study of multiple functional traits demonstrated that adaptation to highly divergent environmental conditions in this lizard is potentially linked to an interplay between plasticity and local adaptation variably associated with different functional traits.
Ključne besede: ecophysiology, evaporative water loss, metabolic activity, oxidative stress, preferred temperatures, relative telomere length, skeletochronology, lizard
Objavljeno v DiRROS: 12.07.2024; Ogledov: 81; Prenosov: 73
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10.
Leafhopper males compensate for unclear directional cues in vibration-mediated mate localization
Jernej Polajnar, Ana Kuhelj, Rok Janža, Nada Žnidaršič, Tatjana Simčič, Meta Virant-Doberlet, 2023, izvirni znanstveni članek

Povzetek: Ambient noise and transmission properties of the substrate pose challenges in vibrational signal-mediated mating behavior of arthropods, because vibrational signal production is energetically demanding. We explored implications of these challenges in the leafhopper Aphrodes makarovi (Insecta: Hemiptera: Cicadellidae) by exposing males to various kinds of vibrational noise on a natural substrate and challenging them to find the source of the female playback. Contrary to expectations, males exposed to noise were at least as efficient as control males on account of similar searching success with less signaling effort, while playing back male–female duets allowed the males to switch to satellite behavior and locate the target without signaling, as expected. We found altered mitochondrial structure in males with high signaling effort that likely indicate early damaging processes at the cellular level in tymbal muscle, but no relation between biochemical markers of oxidative stress and signaling effort. Analysis of signal transmission revealed ambiguous amplitude gradients, which might explain relatively low searching success, but it also indicates the existence of behavioral adaptations to complex vibrational environments. We conclude that the observed searching tactic, emphasizing speed rather than thorough evaluation of directional cues, may compensate for unclear stimuli when the target is near.
Ključne besede: biotremology, vibrational communication, sexual behavior of insects, impact of noise on behavior, metabolism of vibrational production
Objavljeno v DiRROS: 12.07.2024; Ogledov: 62; Prenosov: 45
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