1. Matrix type affects carabid beetle community and trait composition, and intraspecific variation in remnant forestsD. Johan Kotze, Matic Gabor, S. Kohout, Heikki Setälä, 2024, original scientific article Abstract: Aim: The Anthropocene is characterised by urban and agricultural landscapes. Within these landscapes, natural to semi-natural habitats are fragmented, isolated and disturbed to varying degrees. Species associated with these natural habitats have to content with the surrounding landscape, both in terms of level of isolation, and matrix type and quality. We investigated the community structure, trait distribution and individual traits of carabid beetles in boreal forest fragments within three matrices: urban, agricultural and freshwater lake. Location: City of Lahti and its surroundings, southern Finland. Taxon: Coleoptera, Carabidae. Methods: Using pitfall traps from June to October 2019, we collected carabid beetles from eight spruce-dominated forest fragments in the urban matrix, 10 fragments in an agricultural matrix, seven fragments on lake islands and three large control forests at the outskirts of the city. Results: Compared to natural forests, carabid beetles in forest fragments in these matrices showed distinct assemblages, and with beetle diversity the highest in fragments in the agricultural landscape. Fragments in the urban and lake island landscapes were characterised by small-sized species, and those capable of flight. We also found strong intraspecific trait responses in terms of body size, with some generalist species being significantly smaller in urban, agricultural or lake island fragments compared to the controls. Main Conclusions: The matrix has a clear effect on carabid beetle communities, both in terms of taxonomic and trait distribution, and filters for communities of smaller sized species and those capable of flight. Such overall community and intraspecific effects can have considerable effects on populations and community assemblages: As anthropogenic effects intensify in urban and agricultural landscapes, our findings may be the expression of further morphological and physiological responses, and eventually in the adaptation of those species that can cope with the Anthropocene.
Keywords: biogeography, ground beetle, urban lake, agricultural lake, freshwater lake, zoology
Published in DiRROS: 16.05.2024; Views: 116; Downloads: 287
 Full text (8,13 MB)
This document has many files! More... |
2. A meta-analysis of global fungal distribution reveals climate-driven patternsTomáš Větrovský, Petr Kohout, Martin Kopecky, Antonin Machac, Matěj Man, Barbara Doreen Bahnmann, Vendula Brabcová, Jinlyung Choi, Lenka Mészárosová, Zander Rainier Human, Clémentine Lepinay, Rubén López-Mondéjar, Tijana Martinović, 2019, original scientific article Abstract: The evolutionary and environmental factors that shape fungal biogeography are incompletely understood. Here, we assemble a large dataset consisting of previously generated mycobiome data linked to specific geographical locations across the world. We use this dataset to describe the distribution of fungal taxa and to look for correlations with different environmental factors such as climate, soil and vegetation variables. Our meta-study identifies climate as an important driver of different aspects of fungal biogeography, including the global distribution of common fungi as well as the composition and diversity of fungal communities. In our analysis, fungal diversity is concentrated at high latitudes, in contrast with the opposite pattern previously shown for plants and other organisms. Mycorrhizal fungi appear to have narrower climatic tolerances than pathogenic fungi. We speculate that climate change could affect ecosystem functioning because of the narrow climatic tolerances of key fungal taxa.
Keywords: fungi, global distribution, climate
Published in DiRROS: 03.01.2022; Views: 839; Downloads: 594
Full text (1,59 MB)
This document has many files! More... |
3. GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studiesTomáš Větrovský, Daniel Morais, Petr Kohout, Clémentine Lepinay, Camelia Algora, Sandra Awokunle Hollá, Barbara Doreen Bahnmann, Květa Bílohnědá, Vendula Brabcová, Federica DʹAlò, Tijana Martinović, 2020, original scientific article Abstract: Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition, symbiotic associations with cultivated and wild plants and pathogenicity. The high importance of fungi in ecosystem processes contrasts with the incompleteness of our understanding of the patterns of fungal biogeography and the environmental factors that drive those patterns. To reduce this gap of knowledge, we collected and validated data published on the composition of soil fungal communities in terrestrial environments including soil and plant-associated habitats and made them publicly accessible through a user interface at https://globalfungi.com. The GlobalFungi database contains over 600 million observations of fungal sequences across >17 000 samples with geographical locations and additional metadata contained in 178 original studies with millions of unique nucleotide sequences (sequence variants) of the fungal internal transcribed spacers (ITS) 1 and 2 representing fungal species and genera. The study represents the most comprehensive atlas of global fungal distribution, and it is framed in such a way that third-party data addition is possible.
Keywords: fungi, database, metabarcoading
Published in DiRROS: 03.01.2022; Views: 720; Downloads: 600
Full text (2,17 MB)
This document has many files! More... |
