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Abstract: The number of genetically modified organisms (GMOs) on the market is steadily increasing. Because of regulation of cultivation and trade of GMOs in several countries, there is pressure for their accurate detection and quantification. Today, DNA-based approaches are more popular for this purpose than protein-based methods, and real-time quantitative PCR (qPCR) is still the gold standard in GMO analytics. However, digital PCR (dPCR) offers several advantages over qPCR, making this new technique appealing also for GMO analysis. This critical review focuses on the use of dPCR for the purpose of GMO quantification and addresses parameters which are important for achieving accurate and reliable results, such as the quality and purity of DNA and reaction optimization. Three critical factors are explored and discussed in more depth: correct classification of partitions as positive, correctly determined partition volume, and dilution factor. This review could serve as a guide for all laboratories implementing dPCR. Most of the parameters discussed are applicable to fields other than purely GMO testing.
Keywords: digital PCR, droplet digital PCR, chip-based digital PCR, genetically modified organisms, quantification
Published in DiRROS: 06.08.2024; Views: 20; Downloads: 6
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Abstract: This review represents complex mechanisms and processes of multimodal communication in stink bugs. During reproductive behavior the airborne and substrate-borne signals enable mate recognition, mediate directionality of movement, eliminate rivals and motivate partners for copulation. Species specific characteristics prevent hybridization at various levels of mating behavior. Male sex and/or aggregation pheromones as uni- or multicomponent signals attract mates to land on the same plant and there, trigger females to call males by vibratory signals, transmitted through the plant. Communication during courtship runs at short distance with visual, airborne, substrate-borne and contact chemical and mechanical signals. Abdomen vibrations produce the main repertoire of female and male calling, courtship and rival vibratory signals. To increase their informational value, stink bugs tune signal frequency, amplitude and temporal characteristics with mechanical properties of plants. The airborne component of species non-specific and high amplitude signals, produced by body tremulation and wing buzzing enables communication contact between mates standing on mechanically isolated plants. Female vibratory signals increase the amount of male emitted pheromone and the latter keeps female calling. Interaction, synergy and characteristics of visual, contact chemical and vibratory signals, exchanged during courtship remain under-investigated. Female and male competition for access to copulation in imbalanced sex conditions is characterized by duetting with rival song vibratory signals. Different receptors in and on different parts of the body are able to detect with high sensitivity multimodal airborne and substrate-borne communication signals. The relevance of the multimodal communication for the reproductive success of stink bugs is discussed.
Keywords: insects, Pentatomidae, communication, signals, multimodality, transmission medium, environment
Published in DiRROS: 06.08.2024; Views: 15; Downloads: 8
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Abstract: The Mediterranean community represented in this paper is the result of more than 30 years of EU and nationally funded coordination, which has led to key contributions in science concepts and operational initiatives. Together with the establishment of operational services, the community has coordinated with universities, research centers, research infrastructures and private companies to implement advanced multi-platform and integrated observing and forecasting systems that facilitate the advancement of operational services, scientific achievements and mission-oriented innovation. Thus, the community can respond to societal challenges and stakeholders needs, developing a variety of fit-for-purpose services such as the Copernicus Marine Service. The combination of state-of-the-art observations and forecasting provides new opportunities for downstream services in response to the needs of the heavily populated Mediterranean coastal areas and to climate change. The challenge over the next decade is to sustain ocean observations within the research community, to monitor the variability at small scales, e.g., the mesoscale/submesoscale, to resolve the sub-basin/seasonal and inter-annual variability in the circulation, and thus establish the decadal variability, understand and correct the model-associated biases and to enhance model-data integration and ensemble forecasting for uncertainty estimation. Better knowledge and understanding of the level of Mediterranean variability will enable a subsequent evaluation of the impacts and mitigation of the effect of human activities and climate change on the biodiversity and the ecosystem, which will support environmental assessments and decisions. Further challenges include extending the science-based added-value products into societal relevant downstream services and engaging with communities to build initiatives that will contribute to the 2030 Agenda and more specifically to SDG14 and the UN's Decade of Ocean Science for sustainable development, by this contributing to bridge the science-policy gap. The Mediterranean observing and forecasting capacity was built on the basis of community best practices in monitoring and modeling, and can serve as a basis for the development of an integrated global ocean observing system.
Keywords: observing and forecasting systems, sustained observations, ocean variability, FAIR data, climate, operational services, science with and for society, SDG's
Published in DiRROS: 06.08.2024; Views: 12; Downloads: 4
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Abstract: Due to human perceptional bias in favor of air-borne sounds, substrate-borne vibrational signaling has been traditionally regarded as a highly specialized, inherently short-range and, consequently, a private communication channel, free from eavesdropping by sexual competitors and predators. In this review, we synthesize current knowledge pertinent to the view that most animals live in a rich vibratory world, where vibrational information is available to unintended receivers. In recent years, we realized that vibrational signaling is one of the oldest and taxonomically most widespread forms of communication by mechanical waves and that receptors detecting substrate vibrations are ubiquitous. In nature, substrate vibrations are reliable source of information readily available to all members of the animal community able to detect them. Viewing vibrational communication in more relevant ecological context reveals that animals relying on substrate vibrations live in complex communication networks. Long evolutionary history of this communication channel is reflected in varied and sophisticated predator-prey interactions guided by substrate-borne vibrations. Eavesdropping and exploitation of vibrational signals used in sexual communication have been so far largely neglected; however, existing studies show that generalist arthropod predators can intercept such signals emitted by insects to obtain information about prey availability and use that information when making foraging decisions. Moreover, males which advertise themselves for longer periods than females and with vibrational signals of higher amplitude face higher predation risk. It is likely that eavesdropping and exploitation of vibrational signals are major drivers in the evolution taking place in the vibratory world and we believe that studies of interspecific interactions guided by substrate vibrations will, in the future, offer numerous opportunities to unravel mechanisms that are central to understanding behavior in general.
Keywords: biotremology, vibrational communication, communication network, predator-prey interactions, eavesdropping
Published in DiRROS: 06.08.2024; Views: 20; Downloads: 11
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Abstract: Despite accumulating evidence of the importance of the jellyfish-associated microbiome to jellyfish, its potential relevance to blue biotechnology has only recently been recognized. In this review, we emphasize the biotechnological potential of host–microorganism systems and focus on gelatinous zooplankton as a host for the microbiome with biotechnological potential. The basic characteristics of jellyfish-associated microbial communities, the mechanisms underlying the jellyfish-microbe relationship, and the role/function of the jellyfish-associated microbiome and its biotechnological potential are reviewed. It appears that the jellyfish-associated microbiome is discrete from the microbial community in the ambient seawater, exhibiting a certain degree of specialization with some preferences for specific jellyfish taxa and for specific jellyfish populations, life stages, and body parts. In addition, different sampling approaches and methodologies to study the phylogenetic diversity of the jellyfish-associated microbiome are described and discussed. Finally, some general conclusions are drawn from the existing literature and future research directions are highlighted on the jellyfish-associated microbiome.
Keywords: Cnidaria, Ctenophora, biodiversity, bioactive compounds, microbial communities, blue biotechnology
Published in DiRROS: 06.08.2024; Views: 24; Downloads: 8
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