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888. Rule-based design of plant expression vectors using GenoCADAnna Coll Rius, Kristina Gruden, Mandy L. Wilson, Jean Peccoud, 2015, original scientific article Abstract: Plant synthetic biology requires software tools to assist on the design of complex multi-genic expression plasmids. Here a vector design strategy to express genes in plants is formalized and implemented as a grammar in GenoCAD, a Computer-Aided Design software for synthetic biology. It includes a library of plant biological parts organized in structural categories and a set of rules describing how to assemble these parts into large constructs. Rules developed here are organized and divided into three main subsections according to the aim of the final construct: protein localization studies, promoter analysis and protein-protein interaction experiments. The GenoCAD plant grammar guides the user through the design while allowing users to customize vectors according to their needs. Therefore the plant grammar implemented in GenoCAD will help plant biologists take advantage of methods from synthetic biology to design expression vectors supporting their research projects.
Keywords: plasmid construction, plant genetics, gene expression
Published in DiRROS: 26.07.2024; Views: 329; Downloads: 168
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889. Interference of overlapping insect vibratory communication signalsMiguel Borges, Andrej Čokl, Alenka Žunič Kosi, Meta Virant-Doberlet, Raúl Alberto Laumann, Maria Carolina Blassioli Moraes, 2015, original scientific article Abstract: Plants limit the range of insect substrate-borne vibratory communication by their architecture and mechanical properties that change transmitted signal time, amplitude and frequency characteristics. Stinkbugs gain higher signal-to-noise ratio and increase communication distance by emitting narrowband low frequency vibratory signals that are tuned with transmission properties of plants. The objective of the present study was to investigate hitherto overlooked consequences of duetting with mutually overlapped narrowband vibratory signals. The overlapped vibrations of the model stinkbug species Eushistus heros, produced naturally or induced artificially on different plants, have been analysed. They represent female and male strategies to preserve information within a complex masked signal. The brown stinkbugs E. heros communicate with species and gender specific vibratory signals that constitute characteristic duets in the calling, courtship and rivalry phases of mating behaviour. The calling female pulse overlaps the male vibratory response when the latency of the latter is shorter than the duration of the female triggering signal or when the male response does not inhibit the following female pulse. Overlapping of signals induces interference that changes their amplitude pattern to a sequence of regularly repeated pulses in which their duration and the difference between frequencies of overlapped vibrations are related inversely. Interference does not occur in overlapped narrow band female calling pulses and broadband male courtship pulse trains. In a duet with overlapped signals females and males change time parameters and increase the frequency difference between signals by changing the frequency level and frequency modulation pattern of their calls.
Keywords: vibratory communication signals, overlapping
Published in DiRROS: 26.07.2024; Views: 387; Downloads: 585
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890. The groundwater invertebrate fauna of the Channel IslandsAnton Brancelj, Lee R. F. D. Knight, Bernd Hänfling, Colin Cheney, 2015, original scientific article Abstract: The Channel Islands are a small archipelago of British dependencies just off the coast of Normandy at the western end of the English Channel. There were only three records for stygobitic Crustacea [Niphargus fontanus Bate, 1859 and N. kochianus Bate, 1859 from Jersey and N. aquilex Schiődte, 1855 from Guernsey] from the archipelago and no systematic survey has been carried out of the islands for their groundwater fauna till present. Recently sampling was carried out in wells, boreholes and springs on the four largest islands, Jersey, Guernsey, Alderney and Sark during February 2012. Niphargus aquilex was widespread across all four islands and did not appear to be restricted to any particular geology. Niphargus ladmiraulti was present in large numbers in a single borehole on Jersey, the first record of this species from the archipelago. Niphargus kochianus was collected from two sites on Alderney and the syncarid Antrobathynella stammeri (Jakobi, 1954) from two sites on the west coast of Jersey. The records for A. stammeri are new for the Channel Islands and possibly represent the first records of this species from the French bio-geographical area. The presence of N. fontanus on the islands was not confirmed. Several species of stygophilic Cyclopoida were also recorded during the survey along with epigean freshwater invertebrate taxa, which were mostly present in springs and shallow wells close to surface streams.
Keywords: fauna, groundwater, stygobitic
Published in DiRROS: 26.07.2024; Views: 282; Downloads: 189
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