1. Insights into chemopreventive effects of rosmarinic acid against aflatoxin B1-induced genotoxic effectsVeronika Furlan, Matjaž Novak, Martina Štampar, Alja Štern, Bojana Žegura, Urban Bren, 2025, izvirni znanstveni članek Povzetek: In this study, the chemopreventive effects of rosmarinic acid (RA), a major phenolic acid of the plant Rosmarinus officinalis L., against the carcinogenic naturally occurring mycotoxin aflatoxin B1 (AFB1) were investigated using both in silico and in vitro approaches. The in silico investigation of the chemical reactions between rosmarinic acid and the carcinogenic metabolite of AFB1, aflatoxin B1 exo-8,9-epoxide (AFBO), was conducted by activation free energies calculations with DFT functionals M11-L and MN12-L, in conjunction with the 6-311++G(d,p) flexible basis set and implicit solvation model density (SMD), according to a newly developed quantum mechanics-based protocol for the evaluation of carcinogen scavenging activity (QM-CSA). Following the computational analyses, the chemoprotective effects of RA were further studied in vitro in human hepatocellular carcinoma HepG2 cells by analyzing its influence on AFB1-induced genotoxicity using a comet assay, γH2AX, and p-H3, while its impact on cell proliferation and cell cycle modulation was assessed using flow cytometry. Our computational results revealed that the activation free energy required for the reaction of RA with AFBO (14.86 kcal/mol) is significantly lower than the activation free energy for the competing reaction of AFBO with guanine (16.88 kcal/mol), which indicates that RA acts as an efficient natural scavenger of AFBO, potentially preventing AFB1-specific DNA adduct formation. The chemoprotective activity of RA was confirmed through in vitro experiments, which demonstrated a statistically significant (p < 0.05) reduction in AFB1-induced single- and double-strand breaks in HepG2 cells exposed to a mixture of AFB1 and RA at non-cytotoxic concentrations. In addition, RA reversed the AFB1-induced reduction in cell proliferation. Ključne besede: rosmarinic acid, aflatoxin B1, chemopreventive effects, antigenotoxic effects, density functional theory, chemical carcinogen scavenger, toxicology Objavljeno v DiRROS: 03.07.2025; Ogledov: 145; Prenosov: 94
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2. Heterogeneous surface recombination of oxygen atoms on vertically oriented multilayer graphene sheets deposited on a metal substrateDomen Paul, Miran Mozetič, Gregor Primc, Alenka Vesel, Sandra Drev, Rok Zaplotnik, 2025, izvirni znanstveni članek Povzetek: The kinetics of surface recombination of neutral oxygen atoms on nanocarbon deposited on oxidized cobalt catalyst in inductively coupled radiofrequency plasma sustained in propane in the H-mode is presented. The coefficient was measured in the range of temperatures between 300 and 800 K and pressures between 40 and 200 Pa. A deep minimum in the coefficient at 0.03–0.06 was observed and explained by a deposition of a rather smooth carbon film on the cobalt catalyst. Prolonged deposition caused the growth of perpendicularly oriented multilayer graphene sheets with the distance between the neighboring sheets around 100 nm. The large aspect ratio of the gaps, whose depth reached several micrometers after deposition time over 100 s, caused the trapping of oxygen atoms and, thus, numerous collisions with the graphene-like surface, so the coefficient increased for over an order of magnitude. The maximum coefficient over 0.5 was observed at low pressures and elevated temperatures. The evolution of the recombination coefficient was explained by the peculiarities of the binding sites for oxygen atoms on graphene surfaces. Ključne besede: carbon nanowalls, plasma, oxygen, chemical vapor deposition Objavljeno v DiRROS: 17.06.2025; Ogledov: 155; Prenosov: 85
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3. Effects of climate on leaf phenolics, insect herbivory, and their relationship in pedunculate oak (Quercus robur) across its geographic range in EuropeElena Valdés‑Correcher, Yasmine Kadiri, Audrey Bourdin, Anna Mrazova, Flavius Balacenoiu, Manuela Branco, Michal Bogdziewicz, Mona Chor Bjørn, Thomas Damestoy, Jovan Dobrosavljević, Maarten De Groot, 2025, izvirni znanstveni članek Povzetek: An increase in biotic interactions towards lower latitudes is one of the most consistent patterns in ecology. Higher temperatures and more stable climatic conditions at low latitudes are thought to enhance biotic interactions, accelerating biological evolution and leading to stronger anti-herbivore defences in plants. However, some studies report contradictory findings, highlighting the need for further investigation into the underlying mechanisms. We used a combination of field observations and feeding trials in controlled environments to investigate the effect of climate on chemical defences and insect herbivory in pedunculate oak (Quercus robur L.) throughout most of its geographic range in Europe, while controlling for physical defences. The concentration of lignin, flavonoids, and total phenolics increased significantly with temperature, whereas both field herbivory and weight of spongy moth (Lymantria dispar L.) larvae were negatively influenced by temperature. Lignin concentration positively influenced the weight of spongy moth larvae whereas it had no effect on field herbivory. We found no evidence of strong positive relationships between insect herbivory and larvae growth with leaf defences. Our study underscores the complexity of plant–herbivore interactions along climatic gradients and highlights the need for further research to disentangle these intricate relationships. Ključne besede: leaf chemical defences, Lymantria dispar, larvae biomass, pant–insect interactions Objavljeno v DiRROS: 14.04.2025; Ogledov: 321; Prenosov: 119
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5. Quality of Slovenian dry-cured ham from Krškopolje and hybrid pigs : Influence of skin trimming methodsBojana Savić, Martin Škrlep, Nives Marušić Radovčić, Sandra Petričević, Marjeta Čandek-Potokar, 2025, pregledni znanstveni članek Povzetek: This study examined the quality of dry-cured hams produced from local pig breed and modern hybrids using two trimming methods. Hams (n = 24) of similar weight were harvested from local breed “Krškopolje pig” (KKP) and conventional hybrid pigs (CON). The left and right hams from KKP were trimmed according to “Kraški pršut” (K) and “Istrski pršut” (I), respectively, while the hams from CON were trimmed as “Kraški pršut”, yielding 8 hams per treatment (K-KKP, I-KKP, K-CON). After processing, the samples of dry-cured hams (part with biceps femoris, semimembranosus and semitendinosus muscles) were collected and analysed for chemical composition, texture, sensory analysis and volatile profile. Dry-cured hams of local breed (K-KKP) had lower dehydration loss (due to thicker fat cover), moisture content and aw, softer and more plastic texture, with sensory analysis showing more marbling, softer, pastier texture, more pronounced herbal aroma and sweetness than K-CON. Trimming type was associated with higher dehydration loss (due to removed skin), lower moisture content and aw, higher salt content and harder texture, with sensory analysis showing more marbling, more surface moisture and herbal odour, harder and pastier texture, and sweeter and less bitter taste in I-KKP than K-KKP. The analysis of volatile compounds clearly distinguished the types of dry-cured hams, with each exhibiting a unique volatile profile that enabled differentiation based on breed or trimming. Overall, the study highlights some advantages of dry-cured ham from local pig breeds and shows how trimming affects product's characteristics. Ključne besede: pigs, dry-cured ham, Krškopolje pig, Kraški pršut, Istrski pršut, physico-chemical properties, volatile profile Objavljeno v DiRROS: 04.02.2025; Ogledov: 454; Prenosov: 219
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6. Rapid immobilisation of chemical reactions in alkali-activated materials using solely microwave irradiationAnže Tesovnik, Barbara Horvat, 2024, izvirni znanstveni članek Povzetek: Efflorescence, a time-dependent and water-driven phenomenon, is a major concern inalkali-activated materials (AAMs), impacting their practical use and preservation in a time-frozen state for post-characterisation. Although a method for stopping chemical reactions in conventional cements exists, it is time-consuming and not chemical-free. Therefore, this study explored the effects of low-power microwave-induced dehydration on efflorescence, mechanical performance, and structural integrity in AAMs, to create an alternative and more “user-friendly” dehydration method. For this purpose, several mixtures based on secondary raw (slag, fly ash, glass wool, and rock wool) and non-waste (metakaolin) materials were activated with a commercial Na-silicate solution in ratios that promoted or prevented efflorescence. Characterisation techniques, including Fourier-transform infrared spectroscopy and X-ray diffraction, showed that microwave dehydration effectively removed water without altering crystallinity, while mercury intrusion porosimetry and compressive strength tests confirmed increased porosity. In addition to being an efficient, time-saving, and solvent-free manner of stopping the reactions in AAMs, microwave irradiation emerged as an innovative, chemical-free method for evaluating curing finalisation and engineering foams in a stage when all other existing methods fail. However, the artificially provoked efflorescence in aged dehydrated AAMs connected the slipperiness of AAM with the instant extraction of Na, which raised the need for further research into alternative alkali replacements to evaluate the practical use of AAM. Ključne besede: materials chemistry, alkali-activated materials, geopolymers, slag, fly ash, rock wool, glass wool, metakaolin, microwave irradiation, dehydration, stopping chemical reactions, efflorescence Objavljeno v DiRROS: 23.12.2024; Ogledov: 528; Prenosov: 329
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7. Selected topics on Wiener indexMartin Knor, Riste Škrekovski, Aleksandra Tepeh, 2024, izvirni znanstveni članek Povzetek: The Wiener index is defined as the sum of distances between all unordered pairs of vertices in a graph. It is one of the most recognized and well-researched topological indices, which is on the other hand still a very active area of research. This work presents a natural continuation of the paper Mathematical aspects of Wiener index (Ars Math. Contemp., 2016) in which several interesting open questions on the topic were outlined. Here we collect answers gathered so far, give further insights on the topic of extremal values of Wiener index in different settings, and present further intriguing problems and conjectures. Ključne besede: graph distance, Wiener index, average distance, topological index, molecular descriptor, chemical graph theory Objavljeno v DiRROS: 20.11.2024; Ogledov: 382; Prenosov: 192
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8. Nurturing the Ecosoma : Immune System and Impersonal (Dis)CognitionMaxim Miroshnichenko, 2024, pregledni znanstveni članek Povzetek: The article reexamines the immune system as a cognitive entity within an enactivism framework and the 4EA approach, emphasizing embodied, embedded, extended, enactive, and affective cognition. Based on a comparative and conceptualanalytic method, this text contests the mainstream implications of immunology. Challenging the conventional linear immunity model, which simplifies antigens as inputs and antibodies as outputs, the paper proposes a hypothesis where the immune system, through eigenbehavior, creates virtual selves and endogenous “molecular worlds” influenced by environmental factors. This perspective shifts the view of immunity from a reactive, militaristic model to a more nuanced, “peace-loving” system engaged in adaptive interactions with its environment. The study culminates in analyzing multiple chemical sensitivities as instances of discognition, demonstrating how an organism-centric view of immunology highlights the deep interdependence between humans and their surroundings. Ključne besede: immunity, enactivism, eigenbehavior, inhuman cognition, multiple chemical sensitivity Objavljeno v DiRROS: 21.10.2024; Ogledov: 369; Prenosov: 115
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9. Comparative simulative analysis and design of single-chain self-assembled protein cagesFei Xiao, Longfei Luo, Xin Liu, Ajasja Ljubetič, Nengzhi Jin, Roman Jerala, Guang Hu, 2024, izvirni znanstveni članek Povzetek: Coiled-coil protein origami (CCPO) is a modular strategy for the de novo design of polypeptide nanostructures. It represents a type of modular design based on pairwise-interacting coiled-coil (CC) units with a single-chain protein programmed to fold into a polyhedral cage. However, the mechanisms underlying the self-assembly of the protein tetrahedron are still not fully understood. In the present study, 18 CCPO cages with three different topologies were modeled in silico. Then, molecular dynamics simulations and CC parameters were calculated to characterize the dynamic properties of protein tetrahedral cages at both the local and global levels. Furthermore, a deformed CC unit was redesigned, and the stability of the new cage was significantly improved. Ključne besede: chemical structure, conformation, genetics oligomers stability Objavljeno v DiRROS: 03.10.2024; Ogledov: 525; Prenosov: 141
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10. HarmoNIA methodological proposals : Harmonizing monitoring and decommissioning procedures of offshore platformsLoredana Manfra, Claudia Virno Lamberti, Benedetta Trabucco, Andriana Aravantinou, Oliver Bajt, Daniela Berto, Ana Castelli, Silvia Ceracchi, Branko Čermelj, Rossella Di Mento, Maja Fafanđel, Margarita Formalewicz, Michele Giani, Giordano Giorgi, Danijela Joksimović, Pasquale Lanera, Marina Lipizer, Slavica Matijević, Milena Mitrić, Stefanos Papazisimou, Constantine Parinos, Alice Rotini, Christina Zeri, 2020, elaborat, predštudija, študija Povzetek: The overall increase in maritime transport, coastal urbanization and the foreseen increase in offshore oil and gas extraction pose serious risks of pollution from hazardous substances for several coastal states in the whole Mediterranean, and in particular in the Adriatic - Ionian region. Countries sharing a marine region or sub-region should adopt a common approach to environmental monitoring, good environmental status definition and assessment.
In the Adriatic – Ionian marine sub-regions, the level of coherence and consistency of several EU and regional environmental policies, particularly in the assessment of contamination from hazardous substances, needs a common implementation.
In the framework of enhancing the capacity to tackle environmental vulnerability and safeguard ecosystem services at transnational scale, the objective of HarmoNIA is twofold:
to share best practices to support the harmonized implementation of marine environmental directives in the ADRION regionto strengthen the network of data infrastructures to facilitate access and re-use of marine data among countries bordering the Adriatic – Ionian Seas.
Building on the EU initiative EMODnet for the management and supply of fragmented marine data, HarmoNIA will strengthen the existing transnational network of data infrastructures to facilitate access and re-use of marine data among countries bordering the Adriatic – Ionian Seas. The project will improve the coherence, among most countries bordering the Adriatic and Ionian Seas, all Contracting Parties of the Barcelona Convention, of protocols for monitoring and for assessment of contaminants in the marine environment and will facilitate data and information exchange within the region.
The outputs will consist in a Transnational network of institutions adopting a joint data management system for contaminants in the marine environment, and in regional strategies to improve harmonization in monitoring and assessment, and to evaluate risk of contaminant dispersion in vulnerable coastal zones from different pollution sources.
HarmoNIA outputs will improve the coordination among institutions involved in MSFD and UNEP/MAP protocol implementation, local, regional and national authorities in charge of environmental assessment, management, conservation, as well as research institutions, to tackle problems related to pollution dispersal and risks on the coastal areas of the ADRION region. The transnational approach will be assured by the cooperation among partners from most of the countries bordering the ADRION region, with consolidated experience in marine data acquisition and management and involved in the implementation of marine environmental policies. Ključne besede: marine pollution, environment, chemical substances Objavljeno v DiRROS: 03.09.2024; Ogledov: 638; Prenosov: 871
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